Wall clock time and date at job start Tue Mar 31 2020 13:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.47239 * 2 1 4 4 C 1.52998 * 109.47090 * 119.99631 * 2 1 3 5 5 C 1.50706 * 109.47212 * 175.00072 * 4 2 1 6 6 N 1.29425 * 124.80318 * 90.02897 * 5 4 2 7 7 C 1.30941 * 117.36250 * 179.73428 * 6 5 4 8 8 C 1.35657 * 114.19487 * 359.97438 * 7 6 5 9 9 C 1.46682 * 126.13438 * 180.02562 * 8 7 6 10 10 O 1.21685 * 120.00072 * 316.12513 * 9 8 7 11 11 N 1.34776 * 119.99850 * 136.12668 * 9 8 7 12 12 C 1.46922 * 120.63393 * 3.31690 * 11 9 8 13 13 C 1.52769 * 109.00792 * 233.58254 * 12 11 9 14 14 C 1.53039 * 109.38292 * 305.58710 * 13 12 11 15 15 C 1.53034 * 109.53747 * 61.23910 * 14 13 12 16 16 H 1.08999 * 109.49796 * 58.58818 * 15 14 13 17 17 C 1.50704 * 109.49495 * 178.68457 * 15 14 13 18 18 H 1.08001 * 120.00176 * 359.83616 * 17 15 14 19 19 C 1.37881 * 119.99985 * 179.83789 * 17 15 14 20 20 N 1.31513 * 119.99694 * 359.97438 * 19 17 15 21 21 Si 1.86794 * 120.00020 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47235 * 60.00011 * 21 19 17 23 23 H 1.48499 * 109.47128 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47205 * 299.99793 * 21 19 17 25 25 C 1.46927 * 120.62829 * 183.59396 * 11 9 8 26 26 S 1.70955 * 124.80106 * 269.72100 * 5 4 2 27 27 H 1.09005 * 109.47521 * 300.00490 * 1 2 3 28 28 H 1.09007 * 109.46826 * 59.99817 * 1 2 3 29 29 H 1.08998 * 109.47314 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47619 * 240.00032 * 2 1 3 31 31 H 1.08998 * 109.47259 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46938 * 299.99780 * 3 2 1 33 33 H 1.08996 * 109.47012 * 59.99910 * 3 2 1 34 34 H 1.09000 * 109.47126 * 55.00001 * 4 2 1 35 35 H 1.09001 * 109.47559 * 295.00051 * 4 2 1 36 36 H 1.08004 * 122.90605 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.58606 * 353.41797 * 12 11 9 38 38 H 1.09003 * 109.59029 * 113.84331 * 12 11 9 39 39 H 1.08997 * 109.55956 * 185.54978 * 13 12 11 40 40 H 1.08995 * 109.38150 * 65.51674 * 13 12 11 41 41 H 1.09007 * 109.45578 * 301.21947 * 14 13 12 42 42 H 1.08996 * 109.44357 * 181.25361 * 14 13 12 43 43 H 0.97006 * 119.99782 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.58971 * 246.15609 * 25 11 9 45 45 H 1.09000 * 109.58958 * 6.58307 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1890 6 7 4.3654 0.0497 1.6624 7 6 5.6454 -0.1947 1.5349 8 6 5.9284 -1.3646 0.9093 9 6 7.2675 -1.8943 0.6299 10 8 8.1350 -1.1582 0.1983 11 7 7.5369 -3.1961 0.8511 12 6 6.4813 -4.1128 1.3029 13 6 6.9507 -4.8267 2.5693 14 6 8.2979 -5.5018 2.3021 15 6 9.3368 -4.4415 1.9300 16 1 9.4249 -3.7182 2.7407 17 6 10.6706 -5.1037 1.6986 18 1 10.7687 -6.1736 1.8087 19 6 11.7658 -4.3436 1.3464 20 7 11.6462 -3.0409 1.2119 21 14 13.4192 -5.1643 1.0603 22 1 13.2978 -6.1511 -0.0426 23 1 14.4260 -4.1354 0.6960 24 1 13.8484 -5.8586 2.3008 25 6 8.8932 -3.7244 0.6510 26 16 4.3989 -2.1341 0.4921 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6053 -1.7197 1.2952 35 1 1.7516 -0.1582 2.1370 36 1 6.4099 0.4770 1.8966 37 1 5.5743 -3.5479 1.5183 38 1 6.2794 -4.8494 0.5251 39 1 6.2170 -5.5798 2.8569 40 1 7.0610 -4.1002 3.3743 41 1 8.1922 -6.2107 1.4808 42 1 8.6231 -6.0301 3.1983 43 1 12.4166 -2.5061 0.9638 44 1 8.8920 -4.4286 -0.1810 45 1 9.5772 -2.9033 0.4365 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824747436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:22 Heat of formation + Delta-G solvation = -10.266011 kcal Electronic energy + Delta-G solvation = -25132.175292 eV Core-core repulsion = 21661.681313 eV Total energy + Delta-G solvation = -3470.493979 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.10834 -39.15507 -36.84689 -36.46253 -33.48476 -31.90012 -31.10547 -29.86890 -28.27800 -27.39449 -25.26128 -24.98390 -23.93720 -21.97283 -21.24077 -20.63781 -19.39899 -18.48802 -18.01188 -16.65909 -16.10564 -15.83249 -15.25848 -15.19719 -14.71211 -14.58665 -14.22868 -14.05623 -13.82563 -13.48647 -13.37630 -12.93759 -12.69017 -12.59913 -12.47088 -12.22459 -12.13734 -11.98626 -11.54827 -11.41409 -11.20296 -11.11320 -11.01652 -10.96758 -10.56989 -10.54105 -10.28445 -9.97228 -9.81659 -9.50395 -9.26297 -9.10757 -8.98111 -8.79341 -8.47055 -7.85799 -6.03017 -4.12069 0.39267 1.14006 1.57683 2.65050 3.28596 3.34419 3.36789 3.37989 3.67924 3.95560 4.40443 4.51409 4.57996 4.68056 4.88580 5.10827 5.20974 5.24025 5.27427 5.27999 5.38540 5.39870 5.45383 5.51714 5.60965 5.61362 5.66233 5.82529 5.91517 5.99181 6.09612 6.11187 6.16260 6.25055 6.54325 6.60380 6.79137 6.91560 7.06166 7.16305 7.56703 7.64292 7.81126 7.93619 8.11946 8.33302 8.66901 8.91863 9.53838 11.02471 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029833 B = 0.002944 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.322602 B = 9507.664847 C =10076.842974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.040 4.040 5 C 0.038 3.962 6 N -0.470 5.470 7 C 0.097 3.903 8 C -0.266 4.266 9 C 0.581 3.419 10 O -0.519 6.519 11 N -0.594 5.594 12 C 0.098 3.902 13 C -0.132 4.132 14 C -0.111 4.111 15 C 0.040 3.960 16 H 0.030 0.970 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.113 3.887 26 S 0.169 5.831 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.184 0.816 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.265 0.735 44 H 0.046 0.954 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.397 2.505 -0.964 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.081 4.081 5 C -0.237 4.237 6 N -0.184 5.184 7 C -0.058 4.058 8 C -0.390 4.390 9 C 0.365 3.635 10 O -0.396 6.396 11 N -0.326 5.326 12 C -0.027 4.027 13 C -0.170 4.170 14 C -0.148 4.148 15 C 0.021 3.979 16 H 0.048 0.952 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.722 3.278 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.006 4.006 26 S 0.426 5.574 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.200 0.800 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -22.337 2.592 -1.501 22.537 hybrid contribution 1.628 0.139 0.222 1.649 sum -20.710 2.731 -1.279 20.928 Atomic orbital electron populations 1.21828 0.94348 1.01934 1.02214 1.21129 0.95966 0.97104 0.96935 1.21848 1.02005 0.95046 1.01563 1.20421 0.84968 1.02269 1.00449 1.27443 1.01311 0.94352 1.00586 1.66187 1.02156 1.29539 1.20498 1.22052 0.92169 0.94430 0.97187 1.26008 0.98283 1.02030 1.12685 1.16849 0.84791 0.82646 0.79246 1.90864 1.46344 1.57337 1.45096 1.48444 1.12741 1.06997 1.64454 1.21904 0.90281 0.93129 0.97357 1.21853 0.98960 0.99441 0.96746 1.21636 0.93728 0.99001 1.00480 1.18977 0.92559 0.92957 0.93415 0.95227 1.21026 0.92933 0.93842 1.48246 0.92308 1.25061 0.99079 0.94843 0.95050 1.69865 1.30833 1.04460 1.46679 0.86628 0.83502 0.79061 0.78652 1.20218 1.21233 1.20261 1.22408 0.78347 1.00603 0.99265 1.83971 0.96353 1.21977 1.55128 0.92352 0.92293 0.92474 0.90946 0.92033 0.92892 0.92392 0.89552 0.88639 0.79960 0.91075 0.91481 0.91945 0.92103 0.93041 0.92799 0.92499 0.93543 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.19 37.15 0.34 -0.48 16 2 C -0.09 -0.69 2.91 -90.62 -0.26 -0.95 16 3 C -0.15 -1.29 8.99 37.16 0.33 -0.96 16 4 C -0.04 -0.33 5.27 -27.88 -0.15 -0.47 16 5 C 0.04 0.44 5.88 -13.29 -0.08 0.36 16 6 N -0.47 -6.51 9.74 -11.50 -0.11 -6.63 16 7 C 0.10 1.50 11.30 -18.85 -0.21 1.29 16 8 C -0.27 -4.39 5.53 -37.10 -0.21 -4.59 16 9 C 0.58 12.06 7.57 -12.85 -0.10 11.96 16 10 O -0.52 -12.91 16.51 5.20 0.09 -12.82 16 11 N -0.59 -12.06 2.98 -174.56 -0.52 -12.58 16 12 C 0.10 1.56 5.88 -3.93 -0.02 1.53 16 13 C -0.13 -2.12 6.07 -26.83 -0.16 -2.28 16 14 C -0.11 -2.16 5.11 -26.69 -0.14 -2.30 16 15 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 16 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.52 -13.95 8.56 -34.44 -0.29 -14.25 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.88 -25.51 11.39 55.43 0.63 -24.88 16 21 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.11 2.72 5.39 -3.71 -0.02 2.70 16 26 S 0.17 2.06 19.98 -107.50 -2.15 -0.09 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.69 6.80 -51.93 -0.35 0.33 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.18 2.74 8.06 -52.48 -0.42 2.32 16 37 H 0.07 1.00 3.96 -29.90 -0.12 0.88 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.12 3.50 5.14 -51.93 -0.27 3.23 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -31.03 368.80 -9.84 -40.87 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.04 Total: 0.52 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -1.27 Total: -6.04 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.00 Total: -44.09 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.15 Total: -0.09 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.03 -9.84 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824747436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.602 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds