Wall clock time and date at job start Tue Mar 31 2020 13:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.47239 * 2 1 4 4 C 1.52998 * 109.47090 * 119.99631 * 2 1 3 5 5 C 1.50706 * 109.47212 * 175.00072 * 4 2 1 6 6 N 1.29425 * 124.80318 * 90.02897 * 5 4 2 7 7 C 1.30941 * 117.36250 * 179.73428 * 6 5 4 8 8 C 1.35657 * 114.19487 * 359.97438 * 7 6 5 9 9 C 1.46682 * 126.13438 * 180.02562 * 8 7 6 10 10 O 1.21685 * 120.00072 * 316.12513 * 9 8 7 11 11 N 1.34776 * 119.99850 * 136.12668 * 9 8 7 12 12 C 1.46922 * 120.63393 * 3.31690 * 11 9 8 13 13 C 1.52769 * 109.00792 * 233.58254 * 12 11 9 14 14 C 1.53039 * 109.38292 * 305.58710 * 13 12 11 15 15 C 1.53034 * 109.53747 * 61.23910 * 14 13 12 16 16 H 1.08999 * 109.49796 * 58.58818 * 15 14 13 17 17 C 1.50704 * 109.49495 * 178.68457 * 15 14 13 18 18 H 1.08001 * 120.00176 * 359.83616 * 17 15 14 19 19 C 1.37881 * 119.99985 * 179.83789 * 17 15 14 20 20 N 1.31513 * 119.99694 * 359.97438 * 19 17 15 21 21 Si 1.86794 * 120.00020 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47235 * 60.00011 * 21 19 17 23 23 H 1.48499 * 109.47128 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47205 * 299.99793 * 21 19 17 25 25 C 1.46927 * 120.62829 * 183.59396 * 11 9 8 26 26 S 1.70955 * 124.80106 * 269.72100 * 5 4 2 27 27 H 1.09005 * 109.47521 * 300.00490 * 1 2 3 28 28 H 1.09007 * 109.46826 * 59.99817 * 1 2 3 29 29 H 1.08998 * 109.47314 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47619 * 240.00032 * 2 1 3 31 31 H 1.08998 * 109.47259 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46938 * 299.99780 * 3 2 1 33 33 H 1.08996 * 109.47012 * 59.99910 * 3 2 1 34 34 H 1.09000 * 109.47126 * 55.00001 * 4 2 1 35 35 H 1.09001 * 109.47559 * 295.00051 * 4 2 1 36 36 H 1.08004 * 122.90605 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.58606 * 353.41797 * 12 11 9 38 38 H 1.09003 * 109.59029 * 113.84331 * 12 11 9 39 39 H 1.08997 * 109.55956 * 185.54978 * 13 12 11 40 40 H 1.08995 * 109.38150 * 65.51674 * 13 12 11 41 41 H 1.09007 * 109.45578 * 301.21947 * 14 13 12 42 42 H 1.08996 * 109.44357 * 181.25361 * 14 13 12 43 43 H 0.97006 * 119.99782 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.58971 * 246.15609 * 25 11 9 45 45 H 1.09000 * 109.58958 * 6.58307 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1890 6 7 4.3654 0.0497 1.6624 7 6 5.6454 -0.1947 1.5349 8 6 5.9284 -1.3646 0.9093 9 6 7.2675 -1.8943 0.6299 10 8 8.1350 -1.1582 0.1983 11 7 7.5369 -3.1961 0.8511 12 6 6.4813 -4.1128 1.3029 13 6 6.9507 -4.8267 2.5693 14 6 8.2979 -5.5018 2.3021 15 6 9.3368 -4.4415 1.9300 16 1 9.4249 -3.7182 2.7407 17 6 10.6706 -5.1037 1.6986 18 1 10.7687 -6.1736 1.8087 19 6 11.7658 -4.3436 1.3464 20 7 11.6462 -3.0409 1.2119 21 14 13.4192 -5.1643 1.0603 22 1 13.2978 -6.1511 -0.0426 23 1 14.4260 -4.1354 0.6960 24 1 13.8484 -5.8586 2.3008 25 6 8.8932 -3.7244 0.6510 26 16 4.3989 -2.1341 0.4921 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6053 -1.7197 1.2952 35 1 1.7516 -0.1582 2.1370 36 1 6.4099 0.4770 1.8966 37 1 5.5743 -3.5479 1.5183 38 1 6.2794 -4.8494 0.5251 39 1 6.2170 -5.5798 2.8569 40 1 7.0610 -4.1002 3.3743 41 1 8.1922 -6.2107 1.4808 42 1 8.6231 -6.0301 3.1983 43 1 12.4166 -2.5061 0.9638 44 1 8.8920 -4.4286 -0.1810 45 1 9.5772 -2.9033 0.4365 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824747436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:21 Heat of formation + Delta-G solvation = -28.576826 kcal Electronic energy + Delta-G solvation = -25132.969309 eV Core-core repulsion = 21661.681313 eV Total energy + Delta-G solvation = -3471.287996 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.43855 -40.52399 -38.42237 -37.24485 -35.38844 -33.60331 -32.28035 -31.49009 -29.33243 -27.96734 -27.12784 -26.42203 -25.10545 -23.59899 -22.65031 -21.29864 -20.94845 -19.67319 -19.41414 -18.40981 -17.71832 -17.27801 -16.62808 -16.34547 -15.93121 -15.80126 -15.68168 -15.27766 -15.03156 -14.81725 -14.54048 -14.41280 -14.28561 -13.89142 -13.62249 -13.45089 -13.03151 -12.87537 -12.83461 -12.71778 -12.66151 -12.34587 -12.30179 -12.09136 -11.98108 -11.79424 -11.70467 -11.60997 -11.33649 -11.01703 -10.93543 -10.69493 -10.54835 -10.29031 -9.88432 -9.53980 -8.12822 -6.30097 -0.73502 0.03420 0.49003 1.40668 1.41667 1.43982 1.50596 1.82461 2.16639 2.41330 3.01426 3.15663 3.51310 3.83034 3.90443 3.95331 4.02361 4.08058 4.20589 4.28274 4.35883 4.50044 4.66682 4.68030 4.72003 4.72597 4.77975 4.84374 4.89039 4.98298 5.04135 5.06050 5.15674 5.18955 5.21772 5.29941 5.30609 5.46069 5.46122 5.50018 5.57446 5.84955 5.94851 6.28927 6.43068 6.57607 6.82227 7.06415 7.40445 8.90741 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029833 B = 0.002944 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.322602 B = 9507.664847 C =10076.842974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.043 4.043 5 C 0.056 3.944 6 N -0.488 5.488 7 C 0.104 3.896 8 C -0.311 4.311 9 C 0.577 3.423 10 O -0.579 6.579 11 N -0.598 5.598 12 C 0.092 3.908 13 C -0.125 4.125 14 C -0.105 4.105 15 C 0.038 3.962 16 H -0.014 1.014 17 C -0.535 4.535 18 H 0.066 0.934 19 C 0.009 3.991 20 N -0.917 5.917 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.291 1.291 24 H -0.268 1.268 25 C 0.126 3.874 26 S 0.235 5.765 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.173 0.827 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.260 0.740 44 H 0.044 0.956 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.124 0.347 -0.831 26.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.084 4.084 5 C -0.219 4.219 6 N -0.202 5.202 7 C -0.053 4.053 8 C -0.435 4.435 9 C 0.364 3.636 10 O -0.460 6.460 11 N -0.329 5.329 12 C -0.030 4.030 13 C -0.163 4.163 14 C -0.142 4.142 15 C 0.019 3.981 16 H 0.004 0.996 17 C -0.573 4.573 18 H 0.084 0.916 19 C -0.191 4.191 20 N -0.556 5.556 21 Si 0.784 3.216 22 H -0.190 1.190 23 H -0.216 1.216 24 H -0.193 1.193 25 C 0.004 3.996 26 S 0.493 5.507 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.123 0.877 36 H 0.190 0.810 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -26.115 0.378 -1.354 26.153 hybrid contribution 2.647 0.859 0.188 2.790 sum -23.467 1.237 -1.166 23.529 Atomic orbital electron populations 1.21794 0.92399 1.03032 1.02649 1.21138 0.97472 0.95831 0.96457 1.21858 1.00146 0.96479 1.02097 1.20734 0.82112 1.04436 1.01115 1.28233 1.02802 0.93181 0.97645 1.66284 1.01393 1.30461 1.22061 1.22053 0.93030 0.93849 0.96387 1.25550 0.98376 1.03774 1.15833 1.17380 0.86031 0.82268 0.77969 1.90812 1.48826 1.58710 1.47689 1.48435 1.12343 1.07784 1.64305 1.22261 0.89644 0.93072 0.98039 1.21831 0.98061 1.00057 0.96320 1.21524 0.94138 0.97693 1.00892 1.18918 0.93786 0.93394 0.92027 0.99595 1.21480 0.94223 0.94238 1.47374 0.91625 1.25923 1.02942 0.95238 0.94971 1.70077 1.31402 1.06070 1.48032 0.85592 0.78937 0.78043 0.79013 1.19045 1.21642 1.19265 1.21845 0.79994 0.98774 0.98960 1.83556 0.92531 1.20742 1.53899 0.91840 0.92047 0.91040 0.91056 0.94809 0.92228 0.92121 0.86381 0.87746 0.80993 0.88739 0.89006 0.87107 0.93406 0.91885 0.92512 0.93101 0.93723 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.19 71.98 0.66 -0.39 16 2 C -0.09 -1.05 2.91 -10.80 -0.03 -1.08 16 3 C -0.15 -2.35 8.99 71.98 0.65 -1.70 16 4 C -0.04 -0.53 5.27 29.85 0.16 -0.37 16 5 C 0.06 1.15 5.88 88.47 0.52 1.67 16 6 N -0.49 -13.07 9.74 -190.30 -1.85 -14.92 16 7 C 0.10 3.29 11.30 84.23 0.95 4.24 16 8 C -0.31 -10.36 5.53 23.88 0.13 -10.23 16 9 C 0.58 25.16 7.57 86.45 0.65 25.81 16 10 O -0.58 -31.19 16.51 -4.30 -0.07 -31.26 16 11 N -0.60 -24.85 2.98 -824.42 -2.46 -27.31 16 12 C 0.09 2.74 5.88 86.22 0.51 3.25 16 13 C -0.12 -3.70 6.07 30.53 0.19 -3.52 16 14 C -0.10 -3.97 5.11 30.62 0.16 -3.81 16 15 C 0.04 1.92 2.25 -11.46 -0.03 1.89 16 16 H -0.01 -0.83 8.14 -2.39 -0.02 -0.84 16 17 C -0.53 -29.28 8.56 25.60 0.22 -29.06 16 18 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 19 C 0.01 0.49 5.30 84.66 0.45 0.93 16 20 N -0.92 -56.22 11.39 21.45 0.24 -55.97 16 21 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 25 C 0.13 6.35 5.39 86.36 0.47 6.82 16 26 S 0.23 5.08 19.98 -56.49 -1.13 3.95 16 27 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.03 0.72 6.80 -2.39 -0.02 0.70 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.17 5.60 8.06 -2.91 -0.02 5.58 16 37 H 0.10 2.36 3.96 -16.39 -0.06 2.29 16 38 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 42 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 44 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.08 4.74 5.14 -2.39 -0.01 4.72 16 Total: -1.00 -74.18 368.80 3.33 -70.85 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.92 Total: 13.91 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 5.65 Total: -5.55 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -4.07 Total: -98.20 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.07 Total: -31.26 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 5.08 SS G_CDS: -1.13 Total: 3.95 kcal Total: -74.18 3.33 -70.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824747436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.269 kcal (2) G-P(sol) polarization free energy of solvation -74.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds