Wall clock time and date at job start Tue Mar 31 2020 14:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47198 * 2 1 4 4 C 1.53004 * 109.47238 * 120.00101 * 2 1 3 5 5 H 1.09002 * 112.78097 * 45.69903 * 4 2 1 6 6 C 1.53244 * 113.38160 * 274.99217 * 4 2 1 7 7 C 1.53496 * 83.42818 * 219.29090 * 6 4 2 8 8 N 1.47060 * 113.46787 * 176.48092 * 4 2 1 9 9 C 1.34779 * 136.05991 * 321.93401 * 8 4 2 10 10 O 1.21595 * 119.99730 * 354.36589 * 9 8 4 11 11 N 1.34773 * 120.00131 * 174.36810 * 9 8 4 12 12 C 1.40139 * 119.99877 * 184.82922 * 11 9 8 13 13 C 1.38694 * 120.07371 * 19.64320 * 12 11 9 14 14 C 1.38198 * 120.01685 * 180.02562 * 13 12 11 15 15 C 1.38536 * 120.17848 * 359.97438 * 14 13 12 16 16 F 1.35102 * 119.92352 * 180.28406 * 15 14 13 17 17 C 1.38346 * 120.15014 * 0.02562 * 15 14 13 18 18 C 1.38730 * 119.97582 * 0.02562 * 17 15 14 19 19 O 1.35787 * 120.08488 * 179.97438 * 18 17 15 20 20 C 1.34810 * 117.00060 * 354.07417 * 19 18 17 21 21 H 1.08002 * 119.99688 * 5.06560 * 20 19 18 22 22 C 1.38632 * 120.00070 * 185.06030 * 20 19 18 23 23 N 1.31576 * 119.99885 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00121 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46967 * 89.99825 * 24 22 20 26 26 H 1.48490 * 109.47395 * 209.99991 * 24 22 20 27 27 H 1.48495 * 109.46980 * 330.00382 * 24 22 20 28 28 H 1.09002 * 109.46799 * 304.83103 * 1 2 3 29 29 H 1.08998 * 109.47117 * 64.83313 * 1 2 3 30 30 H 1.09005 * 109.47119 * 184.83232 * 1 2 3 31 31 H 1.09002 * 109.46975 * 239.99551 * 2 1 3 32 32 H 1.09000 * 109.47109 * 171.59463 * 3 2 1 33 33 H 1.09001 * 109.47101 * 291.59026 * 3 2 1 34 34 H 1.08995 * 109.47576 * 51.59048 * 3 2 1 35 35 H 1.08996 * 114.32471 * 105.65725 * 6 4 2 36 36 H 1.09000 * 114.19681 * 332.91109 * 6 4 2 37 37 H 1.09000 * 113.47046 * 271.11929 * 7 6 4 38 38 H 1.08999 * 113.46729 * 140.67446 * 7 6 4 39 39 H 0.97003 * 119.99981 * 4.83411 * 11 9 8 40 40 H 1.07997 * 119.98809 * 0.03301 * 13 12 11 41 41 H 1.08011 * 119.90452 * 179.97438 * 14 13 12 42 42 H 1.08003 * 120.01042 * 180.02562 * 17 15 14 43 43 H 0.96993 * 119.99936 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5190 -1.6601 1.4369 6 6 2.1274 0.1851 2.4818 7 6 3.4239 -0.5936 2.7442 8 7 3.5047 -0.8447 1.2973 9 6 4.4887 -1.0788 0.4065 10 8 4.2132 -1.3483 -0.7467 11 7 5.7779 -1.0143 0.7940 12 6 6.8018 -1.1574 -0.1520 13 6 6.5366 -0.9588 -1.4987 14 6 7.5471 -1.1008 -2.4307 15 6 8.8270 -1.4410 -2.0238 16 9 9.8123 -1.5728 -2.9387 17 6 9.0995 -1.6408 -0.6822 18 6 8.0896 -1.5009 0.2586 19 8 8.3545 -1.6970 1.5758 20 6 9.5861 -2.1447 1.8924 21 1 10.3358 -2.2527 1.1225 22 6 9.8903 -2.4662 3.2062 23 7 8.9768 -2.3349 4.1440 24 14 11.5966 -3.0872 3.6447 25 1 12.4700 -1.9355 3.9855 26 1 11.5059 -4.0017 4.8110 27 1 12.1703 -3.8177 2.4862 28 1 -0.3633 0.5870 0.8436 29 1 -0.3633 0.4370 -0.9301 30 1 -0.3633 -1.0241 0.0866 31 1 1.8933 -0.5139 -0.8900 32 1 3.1196 1.4461 0.1502 33 1 1.8046 1.9110 -0.9556 34 1 1.5592 1.9978 0.8052 35 1 1.3455 0.0136 3.2215 36 1 2.2784 1.2397 2.2510 37 1 3.2752 -1.4981 3.3340 38 1 4.2348 0.0286 3.1227 39 1 5.9970 -0.8689 1.7277 40 1 5.5401 -0.6931 -1.8192 41 1 7.3384 -0.9462 -3.4791 42 1 10.0982 -1.9055 -0.3675 43 1 9.1897 -2.5595 5.0632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836455767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:41 Heat of formation + Delta-G solvation = -31.762746 kcal Electronic energy + Delta-G solvation = -27509.138559 eV Core-core repulsion = 23471.499236 eV Total energy + Delta-G solvation = -4037.639324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.19291 -40.87167 -39.49994 -38.05982 -36.16811 -34.61894 -33.84983 -32.38022 -30.05041 -29.22230 -27.73250 -27.31514 -25.78608 -25.46572 -22.95215 -22.13496 -21.49540 -20.51568 -18.99888 -18.32756 -17.89682 -17.29390 -16.74566 -16.12732 -15.43535 -15.34664 -15.18853 -14.93309 -14.59389 -14.39062 -14.26110 -13.72760 -13.57004 -13.51437 -13.32220 -13.14319 -12.79952 -12.51312 -12.35494 -12.24797 -12.14524 -11.68189 -11.64169 -11.48840 -11.36118 -11.08819 -10.97137 -10.93622 -10.69807 -10.53124 -10.27531 -9.78877 -9.75147 -9.32555 -8.94195 -8.58866 -7.82289 -6.97192 -6.58633 -4.15880 1.90780 2.16197 2.61727 3.06883 3.08868 3.13282 3.45338 3.85736 4.07637 4.31215 4.41874 4.71825 4.84039 4.87631 4.91597 5.00324 5.02257 5.15517 5.17097 5.37224 5.46334 5.48161 5.56191 5.58145 5.64029 5.71267 5.78501 5.80349 5.83267 6.03966 6.07284 6.09256 6.24842 6.28322 6.37847 6.66203 6.75191 6.95094 7.00211 7.11709 7.23166 7.52288 7.71944 7.85883 8.30012 8.86247 8.88914 9.49310 10.58864 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012426 B = 0.003969 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.825337 B = 7053.148699 C = 9072.746232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.141 4.141 4 C 0.162 3.838 5 H 0.088 0.912 6 C -0.158 4.158 7 C 0.097 3.903 8 N -0.661 5.661 9 C 0.734 3.266 10 O -0.579 6.579 11 N -0.660 5.660 12 C 0.087 3.913 13 C -0.074 4.074 14 C -0.222 4.222 15 C 0.120 3.880 16 F -0.153 7.153 17 C -0.255 4.255 18 C 0.151 3.849 19 O -0.174 6.174 20 C -0.390 4.390 21 H 0.094 0.906 22 C 0.042 3.958 23 N -0.862 5.862 24 Si 0.942 3.058 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.266 1.266 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.413 0.587 40 H 0.159 0.841 41 H 0.122 0.878 42 H 0.142 0.858 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.543 5.630 -1.751 14.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 C -0.198 4.198 4 C 0.058 3.942 5 H 0.106 0.894 6 C -0.195 4.195 7 C -0.027 4.027 8 N -0.401 5.401 9 C 0.439 3.561 10 O -0.458 6.458 11 N -0.305 5.305 12 C -0.008 4.008 13 C -0.094 4.094 14 C -0.242 4.242 15 C 0.100 3.900 16 F -0.132 7.132 17 C -0.276 4.276 18 C 0.096 3.904 19 O -0.078 6.078 20 C -0.466 4.466 21 H 0.111 0.889 22 C -0.162 4.162 23 N -0.497 5.497 24 Si 0.766 3.234 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.191 1.191 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.249 0.751 40 H 0.176 0.824 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.696 5.379 -2.266 14.888 hybrid contribution 1.399 -0.510 0.614 1.611 sum -12.297 4.869 -1.652 13.329 Atomic orbital electron populations 1.21763 0.94662 1.01704 1.01807 1.21300 0.95535 0.96858 0.98872 1.21835 1.01456 0.95361 1.01153 1.22526 0.79328 0.97508 0.94852 0.89437 1.23622 0.97912 1.00381 0.97626 1.22932 0.97967 0.99210 0.82543 1.48769 1.06671 1.76134 1.08539 1.15171 0.79583 0.77679 0.83697 1.90769 1.82111 1.55849 1.17105 1.42215 1.02780 1.73752 1.11714 1.16774 0.84925 1.10055 0.89064 1.21130 1.00394 0.98092 0.89824 1.20534 0.91572 1.12183 0.99932 1.17467 0.85071 1.01658 0.85805 1.91403 1.61631 1.93748 1.66383 1.20804 1.01407 1.14398 0.90948 1.18648 0.91056 0.95003 0.85729 1.83891 1.34508 1.72783 1.16584 1.21327 0.86397 1.44382 0.94517 0.88877 1.25261 0.99930 0.96589 0.94429 1.70007 1.33508 1.44685 1.01477 0.85686 0.80070 0.78863 0.78748 1.19780 1.20197 1.19075 0.92624 0.92526 0.92672 0.89267 0.92473 0.92974 0.92629 0.89436 0.88013 0.89782 0.90295 0.75100 0.82362 0.86022 0.84003 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.18 37.16 0.34 -0.80 16 2 C -0.11 -1.14 2.83 -90.62 -0.26 -1.40 16 3 C -0.14 -1.47 7.93 37.15 0.29 -1.17 16 4 C 0.16 1.75 3.81 -72.53 -0.28 1.47 16 5 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 6 C -0.16 -1.31 7.63 -26.35 -0.20 -1.51 16 7 C 0.10 1.05 8.30 -8.51 -0.07 0.98 16 8 N -0.66 -9.34 3.06 -183.36 -0.56 -9.90 16 9 C 0.73 13.43 8.45 -86.92 -0.73 12.69 16 10 O -0.58 -11.81 12.85 5.28 0.07 -11.74 16 11 N -0.66 -12.94 5.34 -14.07 -0.08 -13.02 16 12 C 0.09 1.88 6.53 -83.44 -0.54 1.34 16 13 C -0.07 -1.49 8.79 -39.43 -0.35 -1.84 16 14 C -0.22 -4.30 10.02 -39.49 -0.40 -4.69 16 15 C 0.12 2.48 7.29 -39.43 -0.29 2.19 16 16 F -0.15 -3.01 17.26 2.25 0.04 -2.97 16 17 C -0.25 -5.71 9.14 -39.36 -0.36 -6.06 16 18 C 0.15 3.58 6.66 -38.95 -0.26 3.32 16 19 O -0.17 -4.61 9.11 -0.01 0.00 -4.61 16 20 C -0.39 -10.41 9.49 30.88 0.29 -10.12 16 21 H 0.09 2.35 5.21 -52.49 -0.27 2.07 16 22 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 23 N -0.86 -23.59 13.67 55.48 0.76 -22.83 16 24 Si 0.94 19.87 29.55 -169.99 -5.02 14.84 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 27 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 28 H 0.05 0.38 8.13 -51.93 -0.42 -0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 1.23 7.19 -51.93 -0.37 0.86 16 32 H 0.06 0.73 7.62 -51.93 -0.40 0.33 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.47 6.70 -51.93 -0.35 0.12 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.84 5.67 -51.93 -0.29 0.54 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.41 8.01 7.98 -40.82 -0.33 7.69 16 40 H 0.16 3.17 5.39 -52.49 -0.28 2.89 16 41 H 0.12 2.04 8.06 -52.48 -0.42 1.62 16 42 H 0.14 3.16 5.64 -52.48 -0.30 2.87 16 43 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 356.59 15.07 5.37 5.37 Total: -1.00 -30.24 356.59 -7.85 -38.09 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -5.53 Total: 11.37 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.90 Total: -4.59 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.12 Total: -45.76 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.07 Total: -16.36 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.04 Total: -2.97 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.24 -7.85 -38.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836455767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.324 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds