Wall clock time and date at job start Tue Mar 31 2020 14:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47198 * 2 1 4 4 C 1.53004 * 109.47238 * 120.00101 * 2 1 3 5 5 H 1.09002 * 112.78097 * 45.69903 * 4 2 1 6 6 C 1.53244 * 113.38160 * 274.99217 * 4 2 1 7 7 C 1.53496 * 83.42818 * 219.29090 * 6 4 2 8 8 N 1.47060 * 113.46787 * 176.48092 * 4 2 1 9 9 C 1.34779 * 136.05991 * 321.93401 * 8 4 2 10 10 O 1.21595 * 119.99730 * 354.36589 * 9 8 4 11 11 N 1.34773 * 120.00131 * 174.36810 * 9 8 4 12 12 C 1.40139 * 119.99877 * 184.82922 * 11 9 8 13 13 C 1.38694 * 120.07371 * 19.64320 * 12 11 9 14 14 C 1.38198 * 120.01685 * 180.02562 * 13 12 11 15 15 C 1.38536 * 120.17848 * 359.97438 * 14 13 12 16 16 F 1.35102 * 119.92352 * 180.28406 * 15 14 13 17 17 C 1.38346 * 120.15014 * 0.02562 * 15 14 13 18 18 C 1.38730 * 119.97582 * 0.02562 * 17 15 14 19 19 O 1.35787 * 120.08488 * 179.97438 * 18 17 15 20 20 C 1.34810 * 117.00060 * 354.07417 * 19 18 17 21 21 H 1.08002 * 119.99688 * 5.06560 * 20 19 18 22 22 C 1.38632 * 120.00070 * 185.06030 * 20 19 18 23 23 N 1.31576 * 119.99885 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00121 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46967 * 89.99825 * 24 22 20 26 26 H 1.48490 * 109.47395 * 209.99991 * 24 22 20 27 27 H 1.48495 * 109.46980 * 330.00382 * 24 22 20 28 28 H 1.09002 * 109.46799 * 304.83103 * 1 2 3 29 29 H 1.08998 * 109.47117 * 64.83313 * 1 2 3 30 30 H 1.09005 * 109.47119 * 184.83232 * 1 2 3 31 31 H 1.09002 * 109.46975 * 239.99551 * 2 1 3 32 32 H 1.09000 * 109.47109 * 171.59463 * 3 2 1 33 33 H 1.09001 * 109.47101 * 291.59026 * 3 2 1 34 34 H 1.08995 * 109.47576 * 51.59048 * 3 2 1 35 35 H 1.08996 * 114.32471 * 105.65725 * 6 4 2 36 36 H 1.09000 * 114.19681 * 332.91109 * 6 4 2 37 37 H 1.09000 * 113.47046 * 271.11929 * 7 6 4 38 38 H 1.08999 * 113.46729 * 140.67446 * 7 6 4 39 39 H 0.97003 * 119.99981 * 4.83411 * 11 9 8 40 40 H 1.07997 * 119.98809 * 0.03301 * 13 12 11 41 41 H 1.08011 * 119.90452 * 179.97438 * 14 13 12 42 42 H 1.08003 * 120.01042 * 180.02562 * 17 15 14 43 43 H 0.96993 * 119.99936 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5190 -1.6601 1.4369 6 6 2.1274 0.1851 2.4818 7 6 3.4239 -0.5936 2.7442 8 7 3.5047 -0.8447 1.2973 9 6 4.4887 -1.0788 0.4065 10 8 4.2132 -1.3483 -0.7467 11 7 5.7779 -1.0143 0.7940 12 6 6.8018 -1.1574 -0.1520 13 6 6.5366 -0.9588 -1.4987 14 6 7.5471 -1.1008 -2.4307 15 6 8.8270 -1.4410 -2.0238 16 9 9.8123 -1.5728 -2.9387 17 6 9.0995 -1.6408 -0.6822 18 6 8.0896 -1.5009 0.2586 19 8 8.3545 -1.6970 1.5758 20 6 9.5861 -2.1447 1.8924 21 1 10.3358 -2.2527 1.1225 22 6 9.8903 -2.4662 3.2062 23 7 8.9768 -2.3349 4.1440 24 14 11.5966 -3.0872 3.6447 25 1 12.4700 -1.9355 3.9855 26 1 11.5059 -4.0017 4.8110 27 1 12.1703 -3.8177 2.4862 28 1 -0.3633 0.5870 0.8436 29 1 -0.3633 0.4370 -0.9301 30 1 -0.3633 -1.0241 0.0866 31 1 1.8933 -0.5139 -0.8900 32 1 3.1196 1.4461 0.1502 33 1 1.8046 1.9110 -0.9556 34 1 1.5592 1.9978 0.8052 35 1 1.3455 0.0136 3.2215 36 1 2.2784 1.2397 2.2510 37 1 3.2752 -1.4981 3.3340 38 1 4.2348 0.0286 3.1227 39 1 5.9970 -0.8689 1.7277 40 1 5.5401 -0.6931 -1.8192 41 1 7.3384 -0.9462 -3.4791 42 1 10.0982 -1.9055 -0.3675 43 1 9.1897 -2.5595 5.0632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836455767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:40 Heat of formation + Delta-G solvation = -48.908136 kcal Electronic energy + Delta-G solvation = -27509.882039 eV Core-core repulsion = 23471.499236 eV Total energy + Delta-G solvation = -4038.382804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.82614 -42.09316 -41.01330 -39.56691 -37.87994 -35.75752 -35.14958 -34.31003 -31.43378 -30.84877 -29.20047 -28.06972 -27.39785 -26.64718 -24.36674 -23.60593 -22.88744 -21.63928 -20.30923 -20.16980 -19.44920 -18.58465 -18.31920 -17.12387 -17.03770 -16.87409 -16.67658 -16.51624 -16.03068 -15.89141 -15.60576 -15.29149 -15.25948 -14.98418 -14.58933 -14.06271 -13.98105 -13.87709 -13.76859 -13.44897 -13.27581 -13.11623 -13.07237 -12.65636 -12.48734 -12.37742 -12.18742 -12.14533 -11.87975 -11.75165 -11.67148 -11.37708 -11.13912 -10.85319 -10.75188 -9.75967 -9.54355 -8.65834 -8.51923 -6.17574 0.20939 0.43934 1.35836 1.38375 1.43241 1.51658 2.00632 2.13208 2.69586 2.78322 3.02070 3.18807 3.43840 3.45601 3.87001 3.91543 4.01928 4.07936 4.11776 4.22279 4.33424 4.37616 4.47751 4.61067 4.63951 4.70755 4.79020 4.84444 4.95129 4.96692 5.02861 5.07587 5.11571 5.20627 5.27626 5.29336 5.31677 5.36460 5.45991 5.54157 5.54950 5.92671 6.04465 6.17567 6.92229 6.92717 7.42763 7.61852 8.69001 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012426 B = 0.003969 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.825337 B = 7053.148699 C = 9072.746232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 C -0.137 4.137 4 C 0.152 3.848 5 H 0.099 0.901 6 C -0.130 4.130 7 C 0.087 3.913 8 N -0.666 5.666 9 C 0.728 3.272 10 O -0.606 6.606 11 N -0.665 5.665 12 C 0.087 3.913 13 C -0.076 4.076 14 C -0.198 4.198 15 C 0.115 3.885 16 F -0.145 7.145 17 C -0.258 4.258 18 C 0.124 3.876 19 O -0.206 6.206 20 C -0.416 4.416 21 H 0.098 0.902 22 C -0.009 4.009 23 N -0.905 5.905 24 Si 1.012 2.988 25 H -0.263 1.263 26 H -0.270 1.270 27 H -0.260 1.260 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.028 0.972 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.411 0.589 40 H 0.165 0.835 41 H 0.157 0.843 42 H 0.138 0.862 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.863 6.140 -1.769 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.124 4.124 3 C -0.194 4.194 4 C 0.049 3.951 5 H 0.117 0.883 6 C -0.167 4.167 7 C -0.035 4.035 8 N -0.404 5.404 9 C 0.432 3.568 10 O -0.488 6.488 11 N -0.309 5.309 12 C -0.009 4.009 13 C -0.097 4.097 14 C -0.218 4.218 15 C 0.094 3.906 16 F -0.123 7.123 17 C -0.279 4.279 18 C 0.071 3.929 19 O -0.112 6.112 20 C -0.492 4.492 21 H 0.116 0.884 22 C -0.208 4.208 23 N -0.542 5.542 24 Si 0.832 3.168 25 H -0.188 1.188 26 H -0.194 1.194 27 H -0.183 1.183 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.144 0.856 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.246 0.754 40 H 0.182 0.818 41 H 0.174 0.826 42 H 0.155 0.845 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.073 5.912 -2.291 16.352 hybrid contribution 1.643 -0.609 0.453 1.810 sum -13.430 5.302 -1.838 14.555 Atomic orbital electron populations 1.21712 0.92141 1.02484 1.02869 1.21256 0.97548 0.96431 0.97194 1.21806 0.99740 0.95626 1.02198 1.22919 0.77142 0.98851 0.96150 0.88310 1.23565 0.96990 0.99629 0.96544 1.23240 0.99434 1.00244 0.80613 1.49028 1.07466 1.74253 1.09691 1.15348 0.79660 0.77649 0.84149 1.90723 1.82467 1.57149 1.18460 1.42271 1.03240 1.74139 1.11276 1.17047 0.84936 1.08856 0.90089 1.21287 1.00922 0.98101 0.89343 1.20909 0.90417 1.08993 1.01456 1.17434 0.85787 1.02096 0.85240 1.91422 1.61395 1.93705 1.65825 1.20887 1.01047 1.14185 0.91811 1.18967 0.92259 0.96293 0.85396 1.83872 1.34711 1.74685 1.17934 1.21740 0.86911 1.45269 0.95283 0.88422 1.26377 1.04055 0.96424 0.93947 1.70116 1.35750 1.46405 1.01946 0.84669 0.74977 0.78548 0.78623 1.18751 1.19426 1.18346 0.90465 0.92375 0.92249 0.93053 0.95320 0.93007 0.90005 0.85644 0.87606 0.88700 0.90814 0.75363 0.81828 0.82582 0.84487 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 9.18 71.98 0.66 -1.16 16 2 C -0.11 -2.14 2.83 -10.79 -0.03 -2.17 16 3 C -0.14 -2.68 7.93 71.98 0.57 -2.11 16 4 C 0.15 3.03 3.81 41.71 0.16 3.19 16 5 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 6 C -0.13 -1.77 7.63 30.84 0.24 -1.53 16 7 C 0.09 1.79 8.30 83.18 0.69 2.48 16 8 N -0.67 -18.72 3.06 -852.27 -2.61 -21.33 16 9 C 0.73 27.27 8.45 179.05 1.51 28.78 16 10 O -0.61 -25.29 12.85 -4.01 -0.05 -25.34 16 11 N -0.66 -27.09 5.34 -316.70 -1.69 -28.78 16 12 C 0.09 3.86 6.53 38.22 0.25 4.11 16 13 C -0.08 -3.05 8.79 22.37 0.20 -2.86 16 14 C -0.20 -7.35 10.02 22.33 0.22 -7.13 16 15 C 0.11 4.64 7.29 22.37 0.16 4.80 16 16 F -0.14 -5.49 17.26 44.97 0.78 -4.71 16 17 C -0.26 -11.79 9.14 22.41 0.20 -11.58 16 18 C 0.12 6.09 6.66 22.68 0.15 6.24 16 19 O -0.21 -11.46 9.11 -22.95 -0.21 -11.67 16 20 C -0.42 -23.02 9.49 67.91 0.64 -22.37 16 21 H 0.10 5.09 5.21 -2.91 -0.02 5.07 16 22 C -0.01 -0.45 5.49 84.83 0.47 0.01 16 23 N -0.91 -51.10 13.67 21.61 0.30 -50.81 16 24 Si 1.01 41.11 29.55 68.60 2.03 43.14 16 25 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 26 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 27 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 28 H 0.08 0.74 8.13 -2.39 -0.02 0.72 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.05 1.45 7.19 -2.39 -0.02 1.43 16 32 H 0.03 0.72 7.62 -2.39 -0.02 0.70 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.15 6.70 -2.39 -0.02 1.14 16 35 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.11 1.41 5.67 -2.39 -0.01 1.39 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.41 16.84 7.98 -92.71 -0.74 16.10 16 40 H 0.16 6.54 5.39 -2.91 -0.02 6.52 16 41 H 0.16 4.73 8.06 -2.90 -0.02 4.71 16 42 H 0.14 6.28 5.64 -2.91 -0.02 6.27 16 43 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -68.46 356.59 4.95 -63.50 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 0.32 Total: 37.31 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 6.10 Total: -1.31 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -4.01 Total: -100.92 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.26 Total: -37.01 kcal Atomic # 9 Polarization: -5.49 SS G_CDS: 0.78 Total: -4.71 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -68.46 4.95 -63.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836455767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.594 kcal (2) G-P(sol) polarization free energy of solvation -68.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds