Wall clock time and date at job start Tue Mar 31 2020 13:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47259 * 2 1 4 4 C 1.52999 * 109.47198 * 120.00225 * 2 1 3 5 5 N 1.46506 * 115.54972 * 39.86868 * 4 2 1 6 6 C 1.34772 * 120.00065 * 80.56644 * 5 4 2 7 7 O 1.21592 * 120.00351 * 5.00039 * 6 5 4 8 8 N 1.34778 * 119.99789 * 184.99235 * 6 5 4 9 9 C 1.40135 * 119.99810 * 174.50553 * 8 6 5 10 10 C 1.38693 * 120.07900 * 335.56939 * 9 8 6 11 11 C 1.38197 * 120.02618 * 179.69764 * 10 9 8 12 12 C 1.38544 * 120.17150 * 0.60213 * 11 10 9 13 13 F 1.35101 * 119.92689 * 179.69526 * 12 11 10 14 14 C 1.38344 * 120.15164 * 359.67898 * 12 11 10 15 15 C 1.38744 * 119.97617 * 0.02562 * 14 12 11 16 16 O 1.35782 * 120.08709 * 180.02562 * 15 14 12 17 17 C 1.34806 * 116.99813 * 5.74791 * 16 15 14 18 18 H 1.07999 * 120.00067 * 5.38449 * 17 16 15 19 19 C 1.38639 * 119.99885 * 185.38983 * 17 16 15 20 20 N 1.31571 * 119.99857 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46896 * 60.00187 * 21 19 17 23 23 H 1.48511 * 109.46776 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47089 * 299.99725 * 21 19 17 25 25 C 1.53001 * 117.49801 * 185.53607 * 4 2 1 26 26 C 1.52999 * 60.03069 * 107.50384 * 25 4 2 27 27 H 1.09000 * 109.46843 * 304.93635 * 1 2 3 28 28 H 1.08996 * 109.46925 * 64.93326 * 1 2 3 29 29 H 1.08997 * 109.47380 * 184.93696 * 1 2 3 30 30 H 1.09004 * 109.46983 * 239.99849 * 2 1 3 31 31 H 1.08996 * 109.47374 * 300.00140 * 3 2 1 32 32 H 1.08997 * 109.47361 * 60.00663 * 3 2 1 33 33 H 1.09010 * 109.46888 * 180.02562 * 3 2 1 34 34 H 0.97000 * 119.99416 * 260.57304 * 5 4 2 35 35 H 0.96996 * 120.00028 * 354.50886 * 8 6 5 36 36 H 1.08007 * 119.98638 * 359.97438 * 10 9 8 37 37 H 1.07998 * 119.91833 * 180.30148 * 11 10 9 38 38 H 1.07995 * 120.01411 * 180.02562 * 14 12 11 39 39 H 0.96999 * 120.00149 * 180.02562 * 20 19 17 40 40 H 1.09004 * 117.49573 * 215.00051 * 25 4 2 41 41 H 1.08997 * 117.50250 * 359.97438 * 25 4 2 42 42 H 1.09001 * 117.49998 * 107.50457 * 26 25 4 43 43 H 1.09000 * 117.49519 * 252.52548 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.2942 -1.9221 1.6343 6 6 1.5297 -3.0916 1.0074 7 8 2.4231 -3.1723 0.1865 8 7 0.7752 -4.1719 1.2905 9 6 0.9427 -5.3549 0.5584 10 6 1.4659 -5.3098 -0.7253 11 6 1.6364 -6.4778 -1.4440 12 6 1.2743 -7.6952 -0.8905 13 9 1.4375 -8.8333 -1.5998 14 6 0.7463 -7.7480 0.3872 15 6 0.5781 -6.5798 1.1166 16 8 0.0605 -6.6291 2.3710 17 6 -0.1584 -7.8517 2.8950 18 1 0.1564 -8.7339 2.3574 19 6 -0.7876 -7.9765 4.1241 20 7 -1.1707 -6.9017 4.7791 21 14 -1.0916 -9.6707 4.8499 22 1 0.2056 -10.3683 5.0386 23 1 -1.7739 -9.5319 6.1617 24 1 -1.9477 -10.4583 3.9270 25 6 3.5491 -0.7158 1.5015 26 6 2.6255 0.1381 2.3725 27 1 -0.3633 0.5885 0.8425 28 1 -0.3633 0.4354 -0.9308 29 1 -0.3634 -1.0238 0.0884 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6769 1.9563 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 0.6308 -1.8752 2.3404 35 1 0.1161 -4.1304 2.0010 36 1 1.7443 -4.3619 -1.1617 37 1 2.0486 -6.4411 -2.4416 38 1 0.4652 -8.6982 0.8166 39 1 -1.6106 -6.9890 5.6392 40 1 3.9869 -1.6055 1.9541 41 1 4.1786 -0.1987 0.7774 42 1 2.4557 -0.1898 3.3981 43 1 2.6469 1.2173 2.2212 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836455793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:08 Heat of formation + Delta-G solvation = -46.601974 kcal Electronic energy + Delta-G solvation = -27315.792471 eV Core-core repulsion = 23277.509670 eV Total energy + Delta-G solvation = -4038.282801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.20653 -40.49809 -39.25387 -38.02903 -36.23758 -34.01679 -33.37119 -32.57392 -32.38475 -29.36218 -28.18345 -27.06068 -25.49135 -23.66902 -22.87043 -22.35133 -21.63651 -20.54018 -18.98905 -18.33962 -18.08974 -17.58550 -16.80365 -16.19436 -15.62467 -15.20262 -15.14964 -14.94306 -14.71745 -14.41127 -14.26490 -14.08140 -13.60632 -13.52502 -13.29906 -13.07822 -12.88104 -12.36491 -12.27253 -12.13204 -11.81411 -11.64091 -11.52406 -11.42887 -11.23797 -11.12798 -11.00460 -10.73102 -10.68094 -10.55924 -9.91562 -9.79953 -9.75245 -9.40350 -8.95263 -8.93754 -7.83802 -7.00792 -6.59666 -4.16839 1.89141 2.15394 2.80808 3.08120 3.08484 3.10912 3.45998 3.66215 3.85696 4.35101 4.40204 4.52582 4.76470 4.80023 4.89967 4.96837 5.02616 5.14731 5.18411 5.20920 5.49762 5.51412 5.61180 5.67784 5.74942 5.77712 5.78537 5.88016 6.03026 6.05477 6.11007 6.18018 6.22398 6.24024 6.58195 6.69122 6.74549 6.94247 6.98407 7.09380 7.17300 7.32379 7.69969 7.84866 8.29425 8.85807 8.88674 9.48230 10.57650 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.003700 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.162105 B = 7565.117995 C = 9237.595334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C -0.148 4.148 4 C 0.126 3.874 5 N -0.715 5.715 6 C 0.706 3.294 7 O -0.575 6.575 8 N -0.664 5.664 9 C 0.086 3.914 10 C -0.064 4.064 11 C -0.224 4.224 12 C 0.122 3.878 13 F -0.153 7.153 14 C -0.255 4.255 15 C 0.152 3.848 16 O -0.172 6.172 17 C -0.391 4.391 18 H 0.093 0.907 19 C 0.043 3.957 20 N -0.862 5.862 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.158 4.158 26 C -0.181 4.181 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.399 0.601 35 H 0.413 0.587 36 H 0.150 0.850 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.272 0.728 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.088 13.497 -5.177 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 C -0.205 4.205 4 C 0.038 3.962 5 N -0.370 5.370 6 C 0.407 3.593 7 O -0.453 6.453 8 N -0.311 5.311 9 C -0.009 4.009 10 C -0.084 4.084 11 C -0.244 4.244 12 C 0.102 3.898 13 F -0.131 7.131 14 C -0.276 4.276 15 C 0.096 3.904 16 O -0.075 6.075 17 C -0.467 4.467 18 H 0.110 0.890 19 C -0.162 4.162 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.196 4.196 26 C -0.219 4.219 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.234 0.766 35 H 0.248 0.752 36 H 0.167 0.833 37 H 0.140 0.860 38 H 0.160 0.840 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.683 13.648 -5.527 15.178 hybrid contribution -0.791 -1.270 1.046 1.826 sum 2.891 12.377 -4.481 13.477 Atomic orbital electron populations 1.21744 0.94654 1.02226 1.01323 1.20806 0.96158 0.95134 0.96449 1.21967 1.01156 0.95489 1.01911 1.20330 0.92543 0.87183 0.96147 1.44380 1.44455 1.06647 1.41511 1.15849 0.81715 0.80023 0.81744 1.90840 1.33235 1.83747 1.37474 1.42273 1.40375 1.09836 1.38576 1.16692 1.09492 0.82563 0.92178 1.20829 0.97599 0.98953 0.91057 1.20498 1.11281 0.90862 1.01752 1.17460 1.00563 0.81472 0.90291 1.91405 1.93668 1.49771 1.78297 1.20825 1.12062 0.99963 0.94795 1.18725 0.94533 0.90892 0.86200 1.83911 1.69738 1.32166 1.21714 1.21277 1.39992 0.82252 1.03141 0.88952 1.25262 0.95669 0.99671 0.95570 1.69993 1.36773 1.28463 1.14386 0.85760 0.79116 0.80088 0.78446 1.19396 1.20213 1.19363 1.23199 0.92437 1.01826 1.02176 1.23543 1.03811 0.98493 0.96055 0.92776 0.92835 0.92296 0.90175 0.92397 0.92168 0.92386 0.76595 0.75163 0.83252 0.86026 0.84020 0.91837 0.88417 0.88275 0.88546 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.96 37.16 0.33 -1.09 16 2 C -0.07 -0.69 3.23 -90.62 -0.29 -0.98 16 3 C -0.15 -1.16 7.86 37.16 0.29 -0.87 16 4 C 0.13 1.45 1.90 -131.78 -0.25 1.20 16 5 N -0.72 -9.42 4.27 -52.38 -0.22 -9.65 16 6 C 0.71 12.08 8.30 -86.92 -0.72 11.36 16 7 O -0.58 -11.23 13.05 5.29 0.07 -11.16 16 8 N -0.66 -12.29 5.30 -14.07 -0.07 -12.37 16 9 C 0.09 1.80 6.46 -83.44 -0.54 1.26 16 10 C -0.06 -1.25 8.72 -39.43 -0.34 -1.59 16 11 C -0.22 -4.24 10.02 -39.48 -0.40 -4.64 16 12 C 0.12 2.48 7.29 -39.43 -0.29 2.19 16 13 F -0.15 -2.97 17.26 2.25 0.04 -2.93 16 14 C -0.26 -5.64 9.11 -39.36 -0.36 -6.00 16 15 C 0.15 3.53 6.66 -38.94 -0.26 3.27 16 16 O -0.17 -4.49 9.16 0.02 0.00 -4.49 16 17 C -0.39 -10.33 9.44 30.88 0.29 -10.04 16 18 H 0.09 2.31 5.30 -52.49 -0.28 2.03 16 19 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 20 N -0.86 -23.44 13.67 55.48 0.76 -22.69 16 21 Si 0.94 19.75 29.55 -169.99 -5.02 14.72 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 C -0.16 -1.83 9.17 -26.73 -0.25 -2.07 16 26 C -0.18 -1.69 9.59 -26.70 -0.26 -1.95 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.69 7.37 -51.93 -0.38 0.30 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.42 6.72 -51.93 -0.35 0.07 16 33 H 0.06 0.44 6.95 -51.92 -0.36 0.08 16 34 H 0.40 4.53 8.85 -40.82 -0.36 4.17 16 35 H 0.41 7.40 8.35 -40.82 -0.34 7.05 16 36 H 0.15 2.88 5.75 -52.48 -0.30 2.57 16 37 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 38 H 0.14 3.12 5.71 -52.49 -0.30 2.83 16 39 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.10 1.02 7.26 -51.93 -0.38 0.64 16 42 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.11 0.80 5.89 -51.93 -0.31 0.50 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -29.54 359.16 -7.62 -37.16 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -5.45 Total: 14.89 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -3.13 Total: -8.91 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.46 Total: -44.70 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.07 Total: -15.65 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.54 -7.62 -37.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836455793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.438 kcal (2) G-P(sol) polarization free energy of solvation -29.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds