Wall clock time and date at job start Tue Mar 31 2020 13:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47259 * 2 1 4 4 C 1.52999 * 109.47198 * 120.00225 * 2 1 3 5 5 N 1.46506 * 115.54972 * 39.86868 * 4 2 1 6 6 C 1.34772 * 120.00065 * 80.56644 * 5 4 2 7 7 O 1.21592 * 120.00351 * 5.00039 * 6 5 4 8 8 N 1.34778 * 119.99789 * 184.99235 * 6 5 4 9 9 C 1.40135 * 119.99810 * 174.50553 * 8 6 5 10 10 C 1.38693 * 120.07900 * 335.56939 * 9 8 6 11 11 C 1.38197 * 120.02618 * 179.69764 * 10 9 8 12 12 C 1.38544 * 120.17150 * 0.60213 * 11 10 9 13 13 F 1.35101 * 119.92689 * 179.69526 * 12 11 10 14 14 C 1.38344 * 120.15164 * 359.67898 * 12 11 10 15 15 C 1.38744 * 119.97617 * 0.02562 * 14 12 11 16 16 O 1.35782 * 120.08709 * 180.02562 * 15 14 12 17 17 C 1.34806 * 116.99813 * 5.74791 * 16 15 14 18 18 H 1.07999 * 120.00067 * 5.38449 * 17 16 15 19 19 C 1.38639 * 119.99885 * 185.38983 * 17 16 15 20 20 N 1.31571 * 119.99857 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46896 * 60.00187 * 21 19 17 23 23 H 1.48511 * 109.46776 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47089 * 299.99725 * 21 19 17 25 25 C 1.53001 * 117.49801 * 185.53607 * 4 2 1 26 26 C 1.52999 * 60.03069 * 107.50384 * 25 4 2 27 27 H 1.09000 * 109.46843 * 304.93635 * 1 2 3 28 28 H 1.08996 * 109.46925 * 64.93326 * 1 2 3 29 29 H 1.08997 * 109.47380 * 184.93696 * 1 2 3 30 30 H 1.09004 * 109.46983 * 239.99849 * 2 1 3 31 31 H 1.08996 * 109.47374 * 300.00140 * 3 2 1 32 32 H 1.08997 * 109.47361 * 60.00663 * 3 2 1 33 33 H 1.09010 * 109.46888 * 180.02562 * 3 2 1 34 34 H 0.97000 * 119.99416 * 260.57304 * 5 4 2 35 35 H 0.96996 * 120.00028 * 354.50886 * 8 6 5 36 36 H 1.08007 * 119.98638 * 359.97438 * 10 9 8 37 37 H 1.07998 * 119.91833 * 180.30148 * 11 10 9 38 38 H 1.07995 * 120.01411 * 180.02562 * 14 12 11 39 39 H 0.96999 * 120.00149 * 180.02562 * 20 19 17 40 40 H 1.09004 * 117.49573 * 215.00051 * 25 4 2 41 41 H 1.08997 * 117.50250 * 359.97438 * 25 4 2 42 42 H 1.09001 * 117.49998 * 107.50457 * 26 25 4 43 43 H 1.09000 * 117.49519 * 252.52548 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.2942 -1.9221 1.6343 6 6 1.5297 -3.0916 1.0074 7 8 2.4231 -3.1723 0.1865 8 7 0.7752 -4.1719 1.2905 9 6 0.9427 -5.3549 0.5584 10 6 1.4659 -5.3098 -0.7253 11 6 1.6364 -6.4778 -1.4440 12 6 1.2743 -7.6952 -0.8905 13 9 1.4375 -8.8333 -1.5998 14 6 0.7463 -7.7480 0.3872 15 6 0.5781 -6.5798 1.1166 16 8 0.0605 -6.6291 2.3710 17 6 -0.1584 -7.8517 2.8950 18 1 0.1564 -8.7339 2.3574 19 6 -0.7876 -7.9765 4.1241 20 7 -1.1707 -6.9017 4.7791 21 14 -1.0916 -9.6707 4.8499 22 1 0.2056 -10.3683 5.0386 23 1 -1.7739 -9.5319 6.1617 24 1 -1.9477 -10.4583 3.9270 25 6 3.5491 -0.7158 1.5015 26 6 2.6255 0.1381 2.3725 27 1 -0.3633 0.5885 0.8425 28 1 -0.3633 0.4354 -0.9308 29 1 -0.3634 -1.0238 0.0884 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6769 1.9563 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 0.6308 -1.8752 2.3404 35 1 0.1161 -4.1304 2.0010 36 1 1.7443 -4.3619 -1.1617 37 1 2.0486 -6.4411 -2.4416 38 1 0.4652 -8.6982 0.8166 39 1 -1.6106 -6.9890 5.6392 40 1 3.9869 -1.6055 1.9541 41 1 4.1786 -0.1987 0.7774 42 1 2.4557 -0.1898 3.3981 43 1 2.6469 1.2173 2.2212 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836455793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:08 Heat of formation + Delta-G solvation = -63.661525 kcal Electronic energy + Delta-G solvation = -27316.532229 eV Core-core repulsion = 23277.509670 eV Total energy + Delta-G solvation = -4039.022559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.81441 -41.87857 -40.70850 -39.33027 -37.90711 -35.53813 -34.35327 -34.29924 -33.60925 -31.05955 -29.77040 -27.82121 -27.38206 -24.76671 -24.01626 -23.69098 -23.08561 -21.90859 -20.19347 -20.04428 -19.51881 -19.16310 -18.19530 -17.25870 -17.17924 -16.90599 -16.57095 -16.39299 -15.99555 -15.81693 -15.62197 -15.37972 -15.26226 -15.23967 -14.88923 -14.05859 -13.96995 -13.77152 -13.63055 -13.41444 -13.13014 -13.02626 -12.62669 -12.58865 -12.36691 -12.31197 -12.17265 -12.02049 -11.90484 -11.70744 -11.63883 -11.34905 -10.96908 -10.81639 -10.67204 -10.06293 -9.54265 -8.67197 -8.51381 -6.16718 0.22498 0.46409 1.36719 1.45126 1.50142 1.54157 2.03940 2.14172 2.70416 2.78925 3.06151 3.07319 3.18921 3.46255 3.64434 3.92956 3.94848 3.95752 4.15826 4.27531 4.34434 4.37912 4.43402 4.60585 4.73835 4.82521 4.85799 4.96048 4.98223 4.99771 5.06602 5.09285 5.22434 5.24392 5.26864 5.28926 5.35121 5.41382 5.46831 5.55601 5.68314 5.90718 5.94142 6.08199 6.93353 6.94617 7.48368 7.63193 8.69148 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.003700 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.162105 B = 7565.117995 C = 9237.595334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.143 4.143 4 C 0.105 3.895 5 N -0.701 5.701 6 C 0.705 3.295 7 O -0.600 6.600 8 N -0.667 5.667 9 C 0.088 3.912 10 C -0.065 4.065 11 C -0.199 4.199 12 C 0.116 3.884 13 F -0.145 7.145 14 C -0.260 4.260 15 C 0.126 3.874 16 O -0.204 6.204 17 C -0.416 4.416 18 H 0.097 0.903 19 C -0.008 4.008 20 N -0.905 5.905 21 Si 1.010 2.990 22 H -0.263 1.263 23 H -0.269 1.269 24 H -0.260 1.260 25 C -0.173 4.173 26 C -0.150 4.150 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.409 0.591 35 H 0.413 0.587 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.136 0.864 39 H 0.275 0.725 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.486 14.735 -5.831 16.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 C -0.200 4.200 4 C 0.017 3.983 5 N -0.355 5.355 6 C 0.406 3.594 7 O -0.479 6.479 8 N -0.313 5.313 9 C -0.008 4.008 10 C -0.086 4.086 11 C -0.219 4.219 12 C 0.096 3.904 13 F -0.124 7.124 14 C -0.281 4.281 15 C 0.072 3.928 16 O -0.110 6.110 17 C -0.492 4.492 18 H 0.115 0.885 19 C -0.207 4.207 20 N -0.542 5.542 21 Si 0.830 3.170 22 H -0.187 1.187 23 H -0.194 1.194 24 H -0.184 1.184 25 C -0.211 4.211 26 C -0.187 4.187 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.245 0.755 35 H 0.249 0.751 36 H 0.175 0.825 37 H 0.174 0.826 38 H 0.154 0.846 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.129 0.871 42 H 0.117 0.883 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.091 14.930 -6.202 16.677 hybrid contribution -0.806 -1.537 1.048 2.027 sum 3.285 13.394 -5.154 14.722 Atomic orbital electron populations 1.21720 0.94386 1.01118 1.02433 1.20780 0.96339 0.96490 0.94665 1.21942 1.01444 0.93477 1.03147 1.20712 0.92441 0.87010 0.98101 1.44336 1.44287 1.06030 1.40848 1.15965 0.81211 0.80491 0.81698 1.90807 1.34189 1.84244 1.38691 1.42313 1.40739 1.09737 1.38549 1.16944 1.08331 0.82840 0.92726 1.21002 0.97349 0.99676 0.90526 1.20880 1.08589 0.89746 1.02712 1.17443 1.00909 0.82267 0.89820 1.91422 1.93607 1.49465 1.77917 1.20908 1.12085 0.99497 0.95647 1.19050 0.95546 0.92149 0.86055 1.83886 1.71734 1.32172 1.23180 1.21677 1.40774 0.82752 1.03965 0.88526 1.26355 0.95097 1.03703 0.95592 1.70103 1.38329 1.30693 1.15043 0.84756 0.79247 0.75172 0.77817 1.18709 1.19378 1.18430 1.23186 0.92588 1.01839 1.03508 1.23647 1.00312 0.99514 0.95277 0.91308 0.92003 0.94565 0.92742 0.91539 0.90582 0.91923 0.75495 0.75108 0.82451 0.82604 0.84629 0.91614 0.91120 0.87100 0.88255 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.96 71.98 0.64 -1.95 16 2 C -0.06 -1.22 3.23 -10.79 -0.03 -1.26 16 3 C -0.14 -1.83 7.86 71.98 0.57 -1.26 16 4 C 0.10 2.28 1.90 3.63 0.01 2.29 16 5 N -0.70 -18.32 4.27 -437.89 -1.87 -20.19 16 6 C 0.71 24.42 8.30 179.06 1.49 25.90 16 7 O -0.60 -23.51 13.05 -4.00 -0.05 -23.56 16 8 N -0.67 -25.33 5.30 -316.70 -1.68 -27.00 16 9 C 0.09 3.73 6.46 38.22 0.25 3.97 16 10 C -0.06 -2.49 8.72 22.37 0.20 -2.30 16 11 C -0.20 -7.17 10.02 22.33 0.22 -6.94 16 12 C 0.12 4.58 7.29 22.37 0.16 4.75 16 13 F -0.15 -5.43 17.26 44.97 0.78 -4.65 16 14 C -0.26 -11.66 9.11 22.42 0.20 -11.46 16 15 C 0.13 6.00 6.66 22.69 0.15 6.15 16 16 O -0.20 -11.13 9.16 -22.84 -0.21 -11.34 16 17 C -0.42 -22.76 9.44 67.92 0.64 -22.12 16 18 H 0.10 4.99 5.30 -2.91 -0.02 4.97 16 19 C -0.01 -0.41 5.49 84.83 0.47 0.05 16 20 N -0.91 -50.78 13.67 21.61 0.30 -50.48 16 21 Si 1.01 40.87 29.55 68.60 2.03 42.90 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 24 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 25 C -0.17 -3.83 9.17 30.59 0.28 -3.55 16 26 C -0.15 -2.42 9.59 30.62 0.29 -2.13 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.04 0.82 7.37 -2.39 -0.02 0.81 16 30 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 0.75 6.72 -2.39 -0.02 0.74 16 33 H 0.06 0.76 6.95 -2.38 -0.02 0.74 16 34 H 0.41 9.15 8.85 -92.71 -0.82 8.33 16 35 H 0.41 15.47 8.35 -92.71 -0.77 14.69 16 36 H 0.16 5.90 5.75 -2.91 -0.02 5.89 16 37 H 0.16 4.55 8.06 -2.91 -0.02 4.53 16 38 H 0.14 6.14 5.71 -2.91 -0.02 6.13 16 39 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.11 2.14 7.26 -2.39 -0.02 2.12 16 42 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.14 1.47 5.89 -2.39 -0.01 1.45 16 Total: -1.00 -65.56 359.16 4.31 -61.25 By element: Atomic # 1 Polarization: 43.46 SS G_CDS: -0.52 Total: 42.94 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 5.53 Total: -9.85 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -3.25 Total: -97.67 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.26 Total: -34.91 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.78 Total: -4.65 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -65.56 4.31 -61.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836455793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.416 kcal (2) G-P(sol) polarization free energy of solvation -65.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds