Wall clock time and date at job start Tue Mar 31 2020 14:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 120.00410 * 2 1 4 4 C 1.53004 * 109.46842 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47061 * 239.99723 * 3 2 1 6 6 C 1.52994 * 109.47375 * 119.99145 * 3 2 1 7 7 N 1.46501 * 109.47332 * 179.97438 * 6 3 2 8 8 C 1.34773 * 120.00110 * 179.97438 * 7 6 3 9 9 O 1.21589 * 120.00361 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99901 * 180.27787 * 8 7 6 11 11 C 1.40138 * 120.00081 * 175.35645 * 10 8 7 12 12 C 1.38688 * 120.07459 * 34.59721 * 11 10 8 13 13 C 1.38200 * 120.02195 * 179.72486 * 12 11 10 14 14 C 1.38549 * 120.17243 * 0.55031 * 13 12 11 15 15 F 1.35101 * 119.92670 * 179.74446 * 14 13 12 16 16 C 1.38350 * 120.14875 * 359.72481 * 14 13 12 17 17 C 1.38734 * 119.97931 * 0.02562 * 16 14 13 18 18 O 1.35777 * 120.08833 * 180.02562 * 17 16 14 19 19 C 1.34803 * 116.99839 * 5.43667 * 18 17 16 20 20 H 1.08003 * 120.00175 * 354.94414 * 19 18 17 21 21 C 1.38635 * 120.00104 * 174.95430 * 19 18 17 22 22 N 1.31578 * 119.99819 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00339 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47036 * 89.99477 * 23 21 19 25 25 H 1.48501 * 109.47280 * 209.99881 * 23 21 19 26 26 H 1.48503 * 109.47169 * 330.00204 * 23 21 19 27 27 H 1.07994 * 120.00047 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99333 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99800 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47062 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.47164 * 299.99652 * 4 3 2 32 32 H 1.08996 * 109.47458 * 59.99920 * 4 3 2 33 33 H 1.08999 * 109.46471 * 299.99297 * 5 3 2 34 34 H 1.08996 * 109.47373 * 59.99604 * 5 3 2 35 35 H 1.09002 * 109.46633 * 179.97438 * 5 3 2 36 36 H 1.09007 * 109.47267 * 60.00207 * 6 3 2 37 37 H 1.09001 * 109.47776 * 300.00223 * 6 3 2 38 38 H 0.97005 * 119.99663 * 0.02562 * 7 6 3 39 39 H 0.96998 * 120.00000 * 355.35605 * 10 8 7 40 40 H 1.08002 * 119.98910 * 359.97438 * 12 11 10 41 41 H 1.07996 * 119.91679 * 180.24909 * 13 12 11 42 42 H 1.07999 * 120.00662 * 180.02562 * 16 14 13 43 43 H 0.96996 * 120.00069 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0694 2.4680 -0.0006 5 6 2.9433 1.3860 -1.2492 6 6 2.9431 1.3862 1.2493 7 7 3.6761 2.6546 1.2490 8 6 4.5181 2.9466 2.2600 9 8 4.6696 2.1572 3.1723 10 7 5.1882 4.1160 2.2625 11 6 5.9881 4.4629 3.3597 12 6 6.6774 3.4808 4.0554 13 6 7.4704 3.8248 5.1336 14 6 7.5707 5.1486 5.5301 15 9 8.3433 5.4786 6.5881 16 6 6.8817 6.1333 4.8447 17 6 6.0879 5.7956 3.7582 18 8 5.4112 6.7603 3.0837 19 6 5.6407 8.0376 3.4483 20 1 6.2733 8.2516 4.2972 21 6 5.0646 9.0767 2.7339 22 7 4.2942 8.8161 1.6996 23 14 5.3820 10.8467 3.2396 24 1 6.5838 11.3560 2.5312 25 1 4.2066 11.6816 2.8838 26 1 5.6083 10.9096 4.7060 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.6144 3.4120 -0.0011 31 1 0.4431 2.4101 -0.8909 32 1 0.4424 2.4105 0.8890 33 1 3.6516 0.5575 -1.2490 34 1 2.3168 1.3282 -2.1392 35 1 3.4880 2.3301 -1.2494 36 1 3.6514 0.5576 1.2495 37 1 2.3164 1.3285 2.1393 38 1 3.5550 3.2846 0.5214 39 1 5.1168 4.7175 1.5049 40 1 6.5975 2.4474 3.7519 41 1 8.0095 3.0592 5.6717 42 1 6.9619 7.1645 5.1555 43 1 3.8914 9.5431 1.1995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836456390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:53 Heat of formation + Delta-G solvation = -56.728078 kcal Electronic energy + Delta-G solvation = -26849.893053 eV Core-core repulsion = 22811.171151 eV Total energy + Delta-G solvation = -4038.721902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.22421 -40.30562 -39.06092 -38.06838 -36.32591 -33.99772 -33.90169 -32.39933 -30.83473 -29.38331 -28.35470 -27.54076 -26.33240 -25.47521 -22.80143 -22.03444 -21.39054 -20.42805 -18.71300 -18.30989 -18.09944 -17.60675 -16.74186 -15.74360 -15.62748 -15.30011 -15.18523 -14.96266 -14.92515 -14.49239 -14.29001 -14.14308 -13.67687 -13.54506 -13.45175 -13.36658 -13.15270 -12.43543 -12.38792 -12.13978 -12.03494 -11.91726 -11.64919 -11.36605 -11.29277 -11.06429 -10.93124 -10.84525 -10.71134 -10.54587 -9.86251 -9.75195 -9.61010 -9.41943 -8.95711 -8.91822 -7.84734 -7.07592 -6.60046 -4.17681 1.88183 2.03651 2.15170 2.97544 3.06515 3.08132 3.12349 3.51053 3.85551 4.37885 4.42994 4.51568 4.61200 4.69538 4.88406 4.96775 5.00487 5.11270 5.14436 5.40338 5.50965 5.54323 5.58977 5.62548 5.74229 5.76613 5.81468 5.85090 6.03156 6.06406 6.09624 6.23924 6.38017 6.53950 6.56465 6.65899 6.72607 6.93591 6.96154 7.10024 7.17714 7.33359 7.69268 7.84540 8.29820 8.85616 8.89851 9.48273 10.57091 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010960 B = 0.003561 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.171338 B = 7861.826808 C =10077.758619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.141 4.141 3 C -0.050 4.050 4 C -0.148 4.148 5 C -0.139 4.139 6 C 0.155 3.845 7 N -0.744 5.744 8 C 0.704 3.296 9 O -0.586 6.586 10 N -0.665 5.665 11 C 0.079 3.921 12 C -0.050 4.050 13 C -0.228 4.228 14 C 0.127 3.873 15 F -0.152 7.152 16 C -0.258 4.258 17 C 0.157 3.843 18 O -0.169 6.169 19 C -0.392 4.392 20 H 0.094 0.906 21 C 0.043 3.957 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.266 1.266 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.397 0.603 39 H 0.410 0.590 40 H 0.143 0.857 41 H 0.122 0.878 42 H 0.143 0.857 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.880 -12.053 -5.896 13.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.160 4.160 3 C -0.051 4.051 4 C -0.205 4.205 5 C -0.196 4.196 6 C 0.031 3.969 7 N -0.401 5.401 8 C 0.405 3.595 9 O -0.465 6.465 10 N -0.312 5.312 11 C -0.016 4.016 12 C -0.071 4.071 13 C -0.248 4.248 14 C 0.107 3.893 15 F -0.131 7.131 16 C -0.279 4.279 17 C 0.101 3.899 18 O -0.072 6.072 19 C -0.468 4.468 20 H 0.111 0.889 21 C -0.162 4.162 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.191 1.191 27 H 0.114 0.886 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.232 0.768 39 H 0.246 0.754 40 H 0.161 0.839 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.080 -12.633 -5.421 14.340 hybrid contribution 0.133 1.597 -0.182 1.613 sum -3.947 -11.036 -5.602 12.991 Atomic orbital electron populations 1.24032 0.96116 1.02221 1.00596 1.22757 0.95821 0.97190 1.00187 1.19924 0.95516 0.94202 0.95449 1.21995 0.98901 0.97413 1.02172 1.21834 0.99164 1.02331 0.96279 1.21106 0.93799 0.85140 0.96862 1.45107 1.47009 1.22156 1.25844 1.15873 0.78893 0.82293 0.82472 1.90869 1.69240 1.49476 1.36896 1.42184 1.47890 1.20388 1.20731 1.16651 1.00519 0.90416 0.94038 1.20679 0.92933 0.99105 0.94392 1.20489 1.07555 0.94056 1.02720 1.17461 0.92757 0.93386 0.85672 1.91408 1.73276 1.93550 1.54843 1.20840 1.05899 1.00297 1.00883 1.18824 0.91645 0.88539 0.90915 1.83932 1.55342 1.14716 1.53171 1.21351 1.32131 0.78491 1.14821 0.88860 1.25267 0.95771 0.99839 0.95294 1.70010 1.28933 1.33311 1.17247 0.85689 0.78328 0.80119 0.79251 1.19759 1.20195 1.19065 0.88556 0.87746 0.87165 0.91956 0.92078 0.91941 0.92195 0.92266 0.92115 0.91530 0.91500 0.76761 0.75401 0.83945 0.85979 0.83996 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 13.70 29.01 0.40 -1.09 16 2 C -0.14 -1.16 8.76 -36.03 -0.32 -1.48 16 3 C -0.05 -0.45 0.75 -155.66 -0.12 -0.57 16 4 C -0.15 -1.34 6.95 37.16 0.26 -1.08 16 5 C -0.14 -1.13 8.28 37.16 0.31 -0.82 16 6 C 0.16 1.80 4.55 -4.04 -0.02 1.78 16 7 N -0.74 -9.86 4.96 -65.22 -0.32 -10.18 16 8 C 0.70 12.35 8.41 -86.92 -0.73 11.62 16 9 O -0.59 -11.91 13.76 5.29 0.07 -11.84 16 10 N -0.67 -12.35 5.20 -14.07 -0.07 -12.42 16 11 C 0.08 1.65 6.33 -83.44 -0.53 1.12 16 12 C -0.05 -0.99 8.70 -39.43 -0.34 -1.33 16 13 C -0.23 -4.30 10.02 -39.48 -0.40 -4.70 16 14 C 0.13 2.57 7.29 -39.43 -0.29 2.28 16 15 F -0.15 -2.94 17.26 2.25 0.04 -2.90 16 16 C -0.26 -5.68 9.14 -39.36 -0.36 -6.04 16 17 C 0.16 3.64 6.66 -38.94 -0.26 3.38 16 18 O -0.17 -4.40 9.32 0.04 0.00 -4.40 16 19 C -0.39 -10.32 9.49 30.88 0.29 -10.03 16 20 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 21 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 22 N -0.86 -23.31 13.67 55.48 0.76 -22.55 16 23 Si 0.94 19.66 29.55 -169.99 -5.02 14.63 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 27 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 28 H 0.10 0.79 5.69 -52.49 -0.30 0.49 16 29 H 0.11 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.06 0.60 6.86 -51.93 -0.36 0.25 16 31 H 0.06 0.49 7.50 -51.93 -0.39 0.10 16 32 H 0.06 0.59 7.50 -51.93 -0.39 0.20 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.50 6.86 -51.93 -0.36 0.15 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.40 4.54 6.18 -40.82 -0.25 4.29 16 39 H 0.41 7.22 8.59 -40.82 -0.35 6.87 16 40 H 0.14 2.72 6.19 -52.49 -0.32 2.40 16 41 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 42 H 0.14 3.12 5.64 -52.49 -0.30 2.82 16 43 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -29.81 360.82 -6.69 -36.50 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -5.38 Total: 13.67 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.19 Total: -5.94 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.36 Total: -45.16 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.07 Total: -16.24 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.81 -6.69 -36.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836456390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.229 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds