Wall clock time and date at job start Tue Mar 31 2020 14:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 120.00410 * 2 1 4 4 C 1.53004 * 109.46842 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47061 * 239.99723 * 3 2 1 6 6 C 1.52994 * 109.47375 * 119.99145 * 3 2 1 7 7 N 1.46501 * 109.47332 * 179.97438 * 6 3 2 8 8 C 1.34773 * 120.00110 * 179.97438 * 7 6 3 9 9 O 1.21589 * 120.00361 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99901 * 180.27787 * 8 7 6 11 11 C 1.40138 * 120.00081 * 175.35645 * 10 8 7 12 12 C 1.38688 * 120.07459 * 34.59721 * 11 10 8 13 13 C 1.38200 * 120.02195 * 179.72486 * 12 11 10 14 14 C 1.38549 * 120.17243 * 0.55031 * 13 12 11 15 15 F 1.35101 * 119.92670 * 179.74446 * 14 13 12 16 16 C 1.38350 * 120.14875 * 359.72481 * 14 13 12 17 17 C 1.38734 * 119.97931 * 0.02562 * 16 14 13 18 18 O 1.35777 * 120.08833 * 180.02562 * 17 16 14 19 19 C 1.34803 * 116.99839 * 5.43667 * 18 17 16 20 20 H 1.08003 * 120.00175 * 354.94414 * 19 18 17 21 21 C 1.38635 * 120.00104 * 174.95430 * 19 18 17 22 22 N 1.31578 * 119.99819 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00339 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47036 * 89.99477 * 23 21 19 25 25 H 1.48501 * 109.47280 * 209.99881 * 23 21 19 26 26 H 1.48503 * 109.47169 * 330.00204 * 23 21 19 27 27 H 1.07994 * 120.00047 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99333 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99800 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47062 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.47164 * 299.99652 * 4 3 2 32 32 H 1.08996 * 109.47458 * 59.99920 * 4 3 2 33 33 H 1.08999 * 109.46471 * 299.99297 * 5 3 2 34 34 H 1.08996 * 109.47373 * 59.99604 * 5 3 2 35 35 H 1.09002 * 109.46633 * 179.97438 * 5 3 2 36 36 H 1.09007 * 109.47267 * 60.00207 * 6 3 2 37 37 H 1.09001 * 109.47776 * 300.00223 * 6 3 2 38 38 H 0.97005 * 119.99663 * 0.02562 * 7 6 3 39 39 H 0.96998 * 120.00000 * 355.35605 * 10 8 7 40 40 H 1.08002 * 119.98910 * 359.97438 * 12 11 10 41 41 H 1.07996 * 119.91679 * 180.24909 * 13 12 11 42 42 H 1.07999 * 120.00662 * 180.02562 * 16 14 13 43 43 H 0.96996 * 120.00069 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0694 2.4680 -0.0006 5 6 2.9433 1.3860 -1.2492 6 6 2.9431 1.3862 1.2493 7 7 3.6761 2.6546 1.2490 8 6 4.5181 2.9466 2.2600 9 8 4.6696 2.1572 3.1723 10 7 5.1882 4.1160 2.2625 11 6 5.9881 4.4629 3.3597 12 6 6.6774 3.4808 4.0554 13 6 7.4704 3.8248 5.1336 14 6 7.5707 5.1486 5.5301 15 9 8.3433 5.4786 6.5881 16 6 6.8817 6.1333 4.8447 17 6 6.0879 5.7956 3.7582 18 8 5.4112 6.7603 3.0837 19 6 5.6407 8.0376 3.4483 20 1 6.2733 8.2516 4.2972 21 6 5.0646 9.0767 2.7339 22 7 4.2942 8.8161 1.6996 23 14 5.3820 10.8467 3.2396 24 1 6.5838 11.3560 2.5312 25 1 4.2066 11.6816 2.8838 26 1 5.6083 10.9096 4.7060 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.6144 3.4120 -0.0011 31 1 0.4431 2.4101 -0.8909 32 1 0.4424 2.4105 0.8890 33 1 3.6516 0.5575 -1.2490 34 1 2.3168 1.3282 -2.1392 35 1 3.4880 2.3301 -1.2494 36 1 3.6514 0.5576 1.2495 37 1 2.3164 1.3285 2.1393 38 1 3.5550 3.2846 0.5214 39 1 5.1168 4.7175 1.5049 40 1 6.5975 2.4474 3.7519 41 1 8.0095 3.0592 5.6717 42 1 6.9619 7.1645 5.1555 43 1 3.8914 9.5431 1.1995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836456390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:52 Heat of formation + Delta-G solvation = -74.094657 kcal Electronic energy + Delta-G solvation = -26850.646124 eV Core-core repulsion = 22811.171151 eV Total energy + Delta-G solvation = -4039.474973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.81730 -41.77155 -40.54334 -39.16134 -37.98288 -35.53853 -35.02829 -34.29787 -31.64193 -31.04055 -29.87415 -28.25659 -27.51759 -27.21410 -24.22852 -23.47410 -22.63445 -21.75531 -20.16029 -19.87097 -19.45970 -18.82803 -18.27023 -17.17747 -16.95117 -16.73880 -16.52311 -16.40863 -16.16478 -15.94318 -15.65657 -15.34824 -15.27581 -15.15697 -14.89681 -14.43377 -14.25823 -14.00311 -13.74557 -13.42130 -13.11951 -13.04139 -12.87969 -12.61147 -12.56443 -12.33808 -12.15139 -12.06745 -11.81419 -11.64908 -11.53048 -11.32719 -11.01162 -10.81560 -10.26157 -10.13127 -9.53303 -8.73487 -8.50217 -6.16194 0.22548 0.47803 1.34688 1.37893 1.44467 1.52585 1.69648 2.06505 2.15090 2.69488 3.06475 3.16502 3.22123 3.46712 3.73898 3.81126 3.91320 3.96224 4.17690 4.27953 4.37920 4.46634 4.58387 4.66835 4.71155 4.80984 4.88556 4.95639 4.97010 5.03046 5.04778 5.13131 5.23511 5.30152 5.33956 5.35419 5.37997 5.46830 5.58554 5.77067 5.89846 5.93578 5.95506 6.09134 6.93961 6.94682 7.46727 7.64226 8.70107 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010960 B = 0.003561 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.171338 B = 7861.826808 C =10077.758619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.152 4.152 3 C -0.041 4.041 4 C -0.148 4.148 5 C -0.138 4.138 6 C 0.155 3.845 7 N -0.727 5.727 8 C 0.702 3.298 9 O -0.613 6.613 10 N -0.666 5.666 11 C 0.079 3.921 12 C -0.051 4.051 13 C -0.203 4.203 14 C 0.122 3.878 15 F -0.145 7.145 16 C -0.264 4.264 17 C 0.131 3.869 18 O -0.202 6.202 19 C -0.416 4.416 20 H 0.098 0.902 21 C -0.008 4.008 22 N -0.904 5.904 23 Si 1.010 2.990 24 H -0.263 1.263 25 H -0.271 1.271 26 H -0.259 1.259 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.407 0.593 39 H 0.413 0.587 40 H 0.153 0.847 41 H 0.158 0.842 42 H 0.136 0.864 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.643 -13.051 -5.860 14.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.170 4.170 3 C -0.042 4.042 4 C -0.205 4.205 5 C -0.195 4.195 6 C 0.031 3.969 7 N -0.383 5.383 8 C 0.403 3.597 9 O -0.494 6.494 10 N -0.313 5.313 11 C -0.017 4.017 12 C -0.072 4.072 13 C -0.223 4.223 14 C 0.102 3.898 15 F -0.123 7.123 16 C -0.285 4.285 17 C 0.077 3.923 18 O -0.107 6.107 19 C -0.492 4.492 20 H 0.116 0.884 21 C -0.207 4.207 22 N -0.541 5.541 23 Si 0.830 3.170 24 H -0.188 1.188 25 H -0.195 1.195 26 H -0.183 1.183 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.137 0.863 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.244 0.756 39 H 0.249 0.751 40 H 0.171 0.829 41 H 0.175 0.825 42 H 0.154 0.846 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.846 -13.670 -5.401 15.193 hybrid contribution 0.094 1.665 -0.134 1.673 sum -3.751 -12.004 -5.535 13.741 Atomic orbital electron populations 1.24190 0.96025 1.02926 0.99413 1.22787 0.96075 0.96970 1.01211 1.19840 0.95136 0.94790 0.94393 1.22005 0.98963 0.97002 1.02565 1.21834 0.99223 1.02286 0.96168 1.21245 0.93766 0.84061 0.97832 1.45060 1.45550 1.22882 1.24819 1.15999 0.79158 0.81585 0.82975 1.90836 1.70240 1.50153 1.38184 1.42202 1.47992 1.20850 1.20301 1.16904 1.00358 0.89967 0.94424 1.20869 0.92684 0.99172 0.94469 1.20877 1.05774 0.94147 1.01515 1.17454 0.92912 0.93558 0.85922 1.91427 1.72971 1.93565 1.54382 1.20919 1.06046 1.00661 1.00857 1.19162 0.92566 0.89031 0.91538 1.83910 1.57186 1.14995 1.54580 1.21743 1.32829 0.79162 1.15492 0.88424 1.26350 0.95312 1.03908 0.95163 1.70115 1.30541 1.34692 1.18731 0.84690 0.78506 0.74589 0.79171 1.18828 1.19532 1.18318 0.87230 0.87749 0.86283 0.92856 0.90689 0.92575 0.91852 0.91221 0.92462 0.91441 0.92886 0.75574 0.75098 0.82948 0.82482 0.84623 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.57 13.70 67.78 0.93 -1.64 16 2 C -0.15 -2.26 8.76 25.64 0.22 -2.03 16 3 C -0.04 -0.69 0.75 -52.93 -0.04 -0.73 16 4 C -0.15 -2.56 6.95 71.98 0.50 -2.06 16 5 C -0.14 -2.04 8.28 71.98 0.60 -1.44 16 6 C 0.15 3.49 4.55 86.38 0.39 3.88 16 7 N -0.73 -19.01 4.96 -478.53 -2.38 -21.38 16 8 C 0.70 24.50 8.41 179.05 1.51 26.01 16 9 O -0.61 -24.57 13.76 -4.00 -0.05 -24.63 16 10 N -0.67 -24.98 5.20 -316.70 -1.65 -26.63 16 11 C 0.08 3.32 6.33 38.22 0.24 3.57 16 12 C -0.05 -1.94 8.70 22.37 0.19 -1.74 16 13 C -0.20 -7.16 10.02 22.33 0.22 -6.93 16 14 C 0.12 4.74 7.29 22.37 0.16 4.90 16 15 F -0.14 -5.32 17.26 44.97 0.78 -4.54 16 16 C -0.26 -11.68 9.14 22.42 0.20 -11.47 16 17 C 0.13 6.19 6.66 22.68 0.15 6.34 16 18 O -0.20 -10.91 9.32 -22.76 -0.21 -11.12 16 19 C -0.42 -22.59 9.49 67.91 0.64 -21.94 16 20 H 0.10 4.99 5.20 -2.91 -0.02 4.98 16 21 C -0.01 -0.40 5.49 84.83 0.47 0.07 16 22 N -0.90 -50.35 13.67 21.61 0.30 -50.06 16 23 Si 1.01 40.57 29.55 68.60 2.03 42.59 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 25 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 26 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 27 H 0.11 1.20 8.06 -2.91 -0.02 1.18 16 28 H 0.10 1.41 5.69 -2.91 -0.02 1.40 16 29 H 0.12 1.55 8.06 -2.91 -0.02 1.53 16 30 H 0.05 1.01 6.86 -2.39 -0.02 0.99 16 31 H 0.07 1.09 7.50 -2.39 -0.02 1.07 16 32 H 0.06 1.03 7.50 -2.39 -0.02 1.02 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.88 6.86 -2.39 -0.02 0.86 16 36 H 0.07 1.53 8.14 -2.38 -0.02 1.52 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.41 9.20 6.18 -92.70 -0.57 8.62 16 39 H 0.41 14.92 8.59 -92.71 -0.80 14.13 16 40 H 0.15 5.54 6.19 -2.91 -0.02 5.52 16 41 H 0.16 4.46 8.06 -2.91 -0.02 4.44 16 42 H 0.14 6.08 5.64 -2.91 -0.02 6.06 16 43 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -64.59 360.82 4.91 -59.69 By element: Atomic # 1 Polarization: 41.62 SS G_CDS: -0.30 Total: 41.32 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 6.40 Total: -5.24 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -3.73 Total: -98.07 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -0.27 Total: -35.75 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.78 Total: -4.54 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.59 kcal Total: -64.59 4.91 -59.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836456390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.409 kcal (2) G-P(sol) polarization free energy of solvation -64.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds