Wall clock time and date at job start Tue Mar 31 2020 14:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46629 * 2 1 4 4 C 1.52996 * 109.47042 * 119.99771 * 2 1 3 5 5 H 1.09001 * 115.56758 * 274.30823 * 4 2 1 6 6 C 1.52999 * 117.49313 * 128.62530 * 4 2 1 7 7 C 1.52997 * 60.00054 * 252.50943 * 6 4 2 8 8 H 1.09000 * 117.51925 * 107.48485 * 7 6 4 9 9 N 1.46506 * 117.50035 * 252.51165 * 7 6 4 10 10 C 1.34767 * 120.00135 * 223.61722 * 9 7 6 11 11 O 1.21599 * 120.00005 * 0.02562 * 10 9 7 12 12 N 1.34780 * 120.00270 * 180.27823 * 10 9 7 13 13 C 1.40125 * 120.00242 * 175.35609 * 12 10 9 14 14 C 1.38699 * 120.07902 * 34.59787 * 13 12 10 15 15 C 1.38194 * 120.02596 * 180.02562 * 14 13 12 16 16 C 1.38549 * 120.17302 * 359.97438 * 15 14 13 17 17 F 1.35102 * 119.92201 * 180.02562 * 16 15 14 18 18 C 1.38342 * 120.15271 * 0.02562 * 16 15 14 19 19 C 1.38747 * 119.97286 * 359.69886 * 18 16 15 20 20 O 1.35774 * 120.08499 * 180.29643 * 19 18 16 21 21 C 1.34808 * 117.00106 * 5.44068 * 20 19 18 22 22 H 1.08004 * 120.00129 * 354.94876 * 21 20 19 23 23 C 1.38640 * 120.00029 * 174.95406 * 21 20 19 24 24 N 1.31570 * 120.00036 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99851 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47472 * 89.99637 * 25 23 21 27 27 H 1.48501 * 109.46860 * 209.99651 * 25 23 21 28 28 H 1.48505 * 109.47134 * 329.99277 * 25 23 21 29 29 H 1.08998 * 109.46875 * 299.99831 * 1 2 3 30 30 H 1.09002 * 109.47243 * 59.99932 * 1 2 3 31 31 H 1.08998 * 109.47036 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46875 * 240.00169 * 2 1 3 33 33 H 1.09004 * 109.47215 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47364 * 299.99994 * 3 2 1 35 35 H 1.08998 * 109.47354 * 60.00463 * 3 2 1 36 36 H 1.09011 * 117.49871 * 145.02313 * 6 4 2 37 37 H 1.09000 * 117.50620 * 359.97438 * 6 4 2 38 38 H 0.97005 * 119.99411 * 43.62347 * 9 7 6 39 39 H 0.96999 * 119.99344 * 355.34961 * 12 10 9 40 40 H 1.08003 * 119.98670 * 359.97438 * 14 13 12 41 41 H 1.08002 * 119.91101 * 179.97438 * 15 14 13 42 42 H 1.07989 * 120.01344 * 179.97438 * 18 16 15 43 43 H 0.96995 * 119.99906 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 2.1272 -0.1061 2.1449 6 6 3.0742 -1.8312 1.0513 7 6 1.6358 -2.1852 1.4342 8 1 1.0062 -2.6344 0.6662 9 7 1.3954 -2.6530 2.8016 10 6 0.5849 -3.7072 3.0205 11 8 0.0536 -4.2705 2.0829 12 7 0.3593 -4.1341 4.2788 13 6 -0.5580 -5.1668 4.5145 14 6 -0.6960 -6.1970 3.5962 15 6 -1.6014 -7.2147 3.8295 16 6 -2.3732 -7.2099 4.9801 17 9 -3.2564 -8.2076 5.2033 18 6 -2.2415 -6.1859 5.9009 19 6 -1.3303 -5.1641 5.6757 20 8 -1.1948 -4.1612 6.5809 21 6 -1.8918 -4.2749 7.7292 22 1 -2.5842 -5.0931 7.8620 23 6 -1.7200 -3.3413 8.7397 24 7 -0.8764 -2.3448 8.5781 25 14 -2.6853 -3.4993 10.3311 26 1 -1.9142 -4.3208 11.2984 27 1 -2.9193 -2.1494 10.9041 28 1 -3.9900 -4.1531 10.0559 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.8417 -1.9464 1.8168 37 1 3.3909 -2.0480 0.0311 38 1 1.8196 -2.2037 3.5495 39 1 0.8321 -3.7265 5.0212 40 1 -0.0962 -6.2035 2.6980 41 1 -1.7077 -8.0158 3.1129 42 1 -2.8444 -6.1842 6.7968 43 1 -0.7559 -1.6919 9.2852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838982430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:33 Heat of formation + Delta-G solvation = -58.913687 kcal Electronic energy + Delta-G solvation = -26616.048317 eV Core-core repulsion = 22577.231640 eV Total energy + Delta-G solvation = -4038.816677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.23579 -40.31453 -39.08427 -38.12294 -36.33926 -34.38370 -34.03772 -32.41453 -31.93245 -29.38390 -28.10148 -27.29884 -25.50776 -23.36419 -22.90852 -22.03562 -21.32950 -20.61788 -19.95021 -18.34745 -18.23109 -17.60831 -16.88660 -15.88468 -15.44698 -15.22943 -15.17228 -14.93963 -14.73825 -14.33773 -14.27793 -14.05930 -13.62581 -13.51194 -13.25311 -13.24586 -12.86815 -12.64076 -12.39235 -12.33619 -12.14578 -11.67286 -11.49694 -11.43063 -11.31481 -11.05722 -10.90746 -10.86772 -10.72118 -10.55205 -10.14810 -9.88550 -9.76493 -9.45761 -8.96632 -8.65955 -7.86118 -7.09563 -6.61065 -4.18781 1.86246 2.13705 2.79644 3.05988 3.07510 3.11834 3.31151 3.83928 3.84687 4.33325 4.36338 4.56026 4.64514 4.78104 4.86829 4.92544 4.95896 5.12307 5.12916 5.21825 5.41910 5.51369 5.57388 5.62600 5.72237 5.73666 5.75270 5.82949 5.88534 5.99225 6.04522 6.17962 6.21582 6.23683 6.54238 6.64134 6.71885 6.92074 6.94449 7.07888 7.15107 7.30611 7.67330 7.83381 8.24888 8.82799 8.86058 9.46825 10.56070 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010696 B = 0.003427 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.291130 B = 8168.868119 C =10164.769491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.063 4.063 3 C -0.144 4.144 4 C -0.157 4.157 5 H 0.107 0.893 6 C -0.193 4.193 7 C 0.112 3.888 8 H 0.138 0.862 9 N -0.717 5.717 10 C 0.708 3.292 11 O -0.584 6.584 12 N -0.663 5.663 13 C 0.078 3.922 14 C -0.050 4.050 15 C -0.228 4.228 16 C 0.128 3.872 17 F -0.152 7.152 18 C -0.258 4.258 19 C 0.157 3.843 20 O -0.169 6.169 21 C -0.392 4.392 22 H 0.094 0.906 23 C 0.043 3.957 24 N -0.860 5.860 25 Si 0.942 3.058 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.266 1.266 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.399 0.601 39 H 0.411 0.589 40 H 0.143 0.857 41 H 0.123 0.877 42 H 0.143 0.857 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.838 3.489 -11.706 13.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 C -0.201 4.201 4 C -0.177 4.177 5 H 0.125 0.875 6 C -0.232 4.232 7 C 0.005 3.995 8 H 0.156 0.844 9 N -0.370 5.370 10 C 0.409 3.591 11 O -0.462 6.462 12 N -0.310 5.310 13 C -0.017 4.017 14 C -0.071 4.071 15 C -0.248 4.248 16 C 0.108 3.892 17 F -0.131 7.131 18 C -0.279 4.279 19 C 0.101 3.899 20 O -0.072 6.072 21 C -0.468 4.468 22 H 0.112 0.888 23 C -0.162 4.162 24 N -0.495 5.495 25 Si 0.766 3.234 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.190 1.190 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.233 0.767 39 H 0.247 0.753 40 H 0.161 0.839 41 H 0.141 0.859 42 H 0.160 0.840 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.527 3.399 -12.389 14.410 hybrid contribution -0.228 0.246 1.736 1.768 sum 6.300 3.644 -10.652 12.901 Atomic orbital electron populations 1.21841 0.94705 1.02382 1.01663 1.20679 0.95902 0.95835 0.95759 1.21808 1.00926 0.95611 1.01784 1.22945 1.03235 0.91300 1.00221 0.87522 1.23642 0.93485 1.03013 1.03042 1.21447 0.97325 0.95685 0.85038 0.84431 1.44435 1.51435 1.33218 1.07893 1.15801 0.79504 0.80280 0.83478 1.90864 1.54336 1.59167 1.41873 1.42166 1.43864 1.37664 1.07311 1.16635 0.96940 0.91546 0.96609 1.20682 0.97675 0.90267 0.98448 1.20488 1.02915 1.02744 0.98684 1.17461 0.90127 0.86178 0.95434 1.91410 1.67051 1.59630 1.94962 1.20839 1.06612 0.97215 1.03240 1.18812 0.91949 0.88588 0.90545 1.83930 1.61481 1.36469 1.25277 1.21357 1.21811 1.13320 0.90331 0.88831 1.25272 0.97078 0.94916 0.98900 1.70006 1.33202 1.12450 1.33820 0.85685 0.79469 0.78170 0.80043 1.19748 1.20186 1.19046 0.92499 0.92815 0.92210 0.91077 0.92670 0.92713 0.92580 0.88608 0.88154 0.76657 0.75312 0.83924 0.85944 0.83970 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.03 37.16 0.34 -1.10 16 2 C -0.06 -0.54 3.07 -90.62 -0.28 -0.82 16 3 C -0.14 -1.09 9.17 37.16 0.34 -0.75 16 4 C -0.16 -1.49 5.07 -90.62 -0.46 -1.95 16 5 H 0.11 1.01 8.11 -51.93 -0.42 0.59 16 6 C -0.19 -1.76 10.10 -26.73 -0.27 -2.03 16 7 C 0.11 1.31 5.64 -67.93 -0.38 0.93 16 8 H 0.14 1.82 6.86 -51.93 -0.36 1.46 16 9 N -0.72 -9.65 5.57 -58.67 -0.33 -9.98 16 10 C 0.71 12.39 8.41 -86.92 -0.73 11.66 16 11 O -0.58 -11.69 13.32 5.28 0.07 -11.62 16 12 N -0.66 -12.28 5.20 -14.07 -0.07 -12.35 16 13 C 0.08 1.62 6.33 -83.44 -0.53 1.09 16 14 C -0.05 -0.97 8.70 -39.43 -0.34 -1.32 16 15 C -0.23 -4.27 10.02 -39.48 -0.40 -4.67 16 16 C 0.13 2.57 7.29 -39.43 -0.29 2.28 16 17 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 18 C -0.26 -5.66 9.14 -39.36 -0.36 -6.02 16 19 C 0.16 3.63 6.66 -38.94 -0.26 3.37 16 20 O -0.17 -4.39 9.31 0.04 0.00 -4.39 16 21 C -0.39 -10.32 9.49 30.88 0.29 -10.03 16 22 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 23 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 24 N -0.86 -23.34 13.67 55.48 0.76 -22.58 16 25 Si 0.94 19.64 29.55 -169.99 -5.02 14.62 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 28 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.65 7.29 -51.93 -0.38 0.27 16 32 H 0.07 0.58 7.90 -51.93 -0.41 0.17 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 37 H 0.10 0.81 8.05 -51.93 -0.42 0.39 16 38 H 0.40 4.58 8.85 -40.82 -0.36 4.22 16 39 H 0.41 7.22 8.58 -40.82 -0.35 6.87 16 40 H 0.14 2.70 6.19 -52.48 -0.32 2.38 16 41 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 42 H 0.14 3.11 5.64 -52.49 -0.30 2.81 16 43 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -29.50 366.72 -8.13 -37.63 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -5.68 Total: 14.35 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -3.42 Total: -8.32 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.36 Total: -44.92 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.07 Total: -16.01 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.50 -8.13 -37.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838982430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.284 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds