Wall clock time and date at job start Tue Mar 31 2020 14:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46629 * 2 1 4 4 C 1.52996 * 109.47042 * 119.99771 * 2 1 3 5 5 H 1.09001 * 115.56758 * 274.30823 * 4 2 1 6 6 C 1.52999 * 117.49313 * 128.62530 * 4 2 1 7 7 C 1.52997 * 60.00054 * 252.50943 * 6 4 2 8 8 H 1.09000 * 117.51925 * 107.48485 * 7 6 4 9 9 N 1.46506 * 117.50035 * 252.51165 * 7 6 4 10 10 C 1.34767 * 120.00135 * 223.61722 * 9 7 6 11 11 O 1.21599 * 120.00005 * 0.02562 * 10 9 7 12 12 N 1.34780 * 120.00270 * 180.27823 * 10 9 7 13 13 C 1.40125 * 120.00242 * 175.35609 * 12 10 9 14 14 C 1.38699 * 120.07902 * 34.59787 * 13 12 10 15 15 C 1.38194 * 120.02596 * 180.02562 * 14 13 12 16 16 C 1.38549 * 120.17302 * 359.97438 * 15 14 13 17 17 F 1.35102 * 119.92201 * 180.02562 * 16 15 14 18 18 C 1.38342 * 120.15271 * 0.02562 * 16 15 14 19 19 C 1.38747 * 119.97286 * 359.69886 * 18 16 15 20 20 O 1.35774 * 120.08499 * 180.29643 * 19 18 16 21 21 C 1.34808 * 117.00106 * 5.44068 * 20 19 18 22 22 H 1.08004 * 120.00129 * 354.94876 * 21 20 19 23 23 C 1.38640 * 120.00029 * 174.95406 * 21 20 19 24 24 N 1.31570 * 120.00036 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99851 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47472 * 89.99637 * 25 23 21 27 27 H 1.48501 * 109.46860 * 209.99651 * 25 23 21 28 28 H 1.48505 * 109.47134 * 329.99277 * 25 23 21 29 29 H 1.08998 * 109.46875 * 299.99831 * 1 2 3 30 30 H 1.09002 * 109.47243 * 59.99932 * 1 2 3 31 31 H 1.08998 * 109.47036 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46875 * 240.00169 * 2 1 3 33 33 H 1.09004 * 109.47215 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47364 * 299.99994 * 3 2 1 35 35 H 1.08998 * 109.47354 * 60.00463 * 3 2 1 36 36 H 1.09011 * 117.49871 * 145.02313 * 6 4 2 37 37 H 1.09000 * 117.50620 * 359.97438 * 6 4 2 38 38 H 0.97005 * 119.99411 * 43.62347 * 9 7 6 39 39 H 0.96999 * 119.99344 * 355.34961 * 12 10 9 40 40 H 1.08003 * 119.98670 * 359.97438 * 14 13 12 41 41 H 1.08002 * 119.91101 * 179.97438 * 15 14 13 42 42 H 1.07989 * 120.01344 * 179.97438 * 18 16 15 43 43 H 0.96995 * 119.99906 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 2.1272 -0.1061 2.1449 6 6 3.0742 -1.8312 1.0513 7 6 1.6358 -2.1852 1.4342 8 1 1.0062 -2.6344 0.6662 9 7 1.3954 -2.6530 2.8016 10 6 0.5849 -3.7072 3.0205 11 8 0.0536 -4.2705 2.0829 12 7 0.3593 -4.1341 4.2788 13 6 -0.5580 -5.1668 4.5145 14 6 -0.6960 -6.1970 3.5962 15 6 -1.6014 -7.2147 3.8295 16 6 -2.3732 -7.2099 4.9801 17 9 -3.2564 -8.2076 5.2033 18 6 -2.2415 -6.1859 5.9009 19 6 -1.3303 -5.1641 5.6757 20 8 -1.1948 -4.1612 6.5809 21 6 -1.8918 -4.2749 7.7292 22 1 -2.5842 -5.0931 7.8620 23 6 -1.7200 -3.3413 8.7397 24 7 -0.8764 -2.3448 8.5781 25 14 -2.6853 -3.4993 10.3311 26 1 -1.9142 -4.3208 11.2984 27 1 -2.9193 -2.1494 10.9041 28 1 -3.9900 -4.1531 10.0559 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.8417 -1.9464 1.8168 37 1 3.3909 -2.0480 0.0311 38 1 1.8196 -2.2037 3.5495 39 1 0.8321 -3.7265 5.0212 40 1 -0.0962 -6.2035 2.6980 41 1 -1.7077 -8.0158 3.1129 42 1 -2.8444 -6.1842 6.7968 43 1 -0.7559 -1.6919 9.2852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838982430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:32 Heat of formation + Delta-G solvation = -75.927256 kcal Electronic energy + Delta-G solvation = -26616.786081 eV Core-core repulsion = 22577.231640 eV Total energy + Delta-G solvation = -4039.554441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.82316 -41.77019 -40.54552 -39.25230 -37.99541 -35.56356 -35.35790 -34.30980 -32.96966 -31.06042 -29.69918 -27.99934 -27.39078 -24.60804 -23.86414 -23.55349 -22.65821 -21.88864 -20.83481 -20.14237 -19.70019 -19.14723 -18.35327 -17.19412 -16.94444 -16.92214 -16.60563 -16.25318 -15.99535 -15.85926 -15.50071 -15.31885 -15.25894 -15.09103 -14.85103 -14.06935 -13.98733 -13.77723 -13.72102 -13.46165 -13.40045 -13.07571 -13.01437 -12.60635 -12.36258 -12.26138 -12.15536 -12.13771 -11.84369 -11.66136 -11.58735 -11.35242 -11.04325 -10.92682 -10.82518 -9.74682 -9.52038 -8.74117 -8.51217 -6.17263 0.21314 0.46836 1.37215 1.43996 1.51117 1.52811 1.97536 2.14263 2.67219 2.94952 3.05775 3.07830 3.18103 3.45751 3.72661 3.81184 3.94930 4.01885 4.15100 4.16995 4.36766 4.41059 4.44641 4.59274 4.68116 4.80566 4.83840 4.94175 4.96488 5.00263 5.02126 5.08002 5.22143 5.22784 5.28871 5.30693 5.34245 5.43891 5.49297 5.54254 5.60511 5.90338 5.94098 6.07691 6.91292 6.93534 7.43925 7.62988 8.69196 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010696 B = 0.003427 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.291130 B = 8168.868119 C =10164.769491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.062 4.062 3 C -0.141 4.141 4 C -0.146 4.146 5 H 0.108 0.892 6 C -0.169 4.169 7 C 0.081 3.919 8 H 0.121 0.879 9 N -0.702 5.702 10 C 0.706 3.294 11 O -0.611 6.611 12 N -0.666 5.666 13 C 0.079 3.921 14 C -0.051 4.051 15 C -0.203 4.203 16 C 0.122 3.878 17 F -0.144 7.144 18 C -0.264 4.264 19 C 0.131 3.869 20 O -0.202 6.202 21 C -0.417 4.417 22 H 0.099 0.901 23 C -0.008 4.008 24 N -0.905 5.905 25 Si 1.011 2.989 26 H -0.263 1.263 27 H -0.271 1.271 28 H -0.259 1.259 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.409 0.591 39 H 0.413 0.587 40 H 0.153 0.847 41 H 0.158 0.842 42 H 0.136 0.864 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.454 3.221 -12.778 15.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.198 4.198 4 C -0.165 4.165 5 H 0.126 0.874 6 C -0.208 4.208 7 C -0.025 4.025 8 H 0.138 0.862 9 N -0.355 5.355 10 C 0.407 3.593 11 O -0.491 6.491 12 N -0.312 5.312 13 C -0.017 4.017 14 C -0.072 4.072 15 C -0.223 4.223 16 C 0.102 3.898 17 F -0.123 7.123 18 C -0.285 4.285 19 C 0.077 3.923 20 O -0.107 6.107 21 C -0.492 4.492 22 H 0.116 0.884 23 C -0.208 4.208 24 N -0.542 5.542 25 Si 0.831 3.169 26 H -0.188 1.188 27 H -0.195 1.195 28 H -0.183 1.183 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.123 0.877 37 H 0.134 0.866 38 H 0.245 0.755 39 H 0.249 0.751 40 H 0.171 0.829 41 H 0.176 0.824 42 H 0.154 0.846 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.173 3.136 -13.502 15.607 hybrid contribution -0.382 0.227 1.825 1.878 sum 6.791 3.363 -11.677 13.921 Atomic orbital electron populations 1.21832 0.95726 1.01213 1.01772 1.20713 0.94987 0.96710 0.95649 1.21781 1.01454 0.94589 1.02001 1.22998 1.02607 0.90215 1.00701 0.87365 1.23706 0.91960 1.01024 1.04107 1.21567 0.99623 0.97732 0.83586 0.86166 1.44361 1.50127 1.31789 1.09246 1.15912 0.79823 0.80923 0.82616 1.90829 1.55611 1.60300 1.42385 1.42185 1.43594 1.37513 1.07946 1.16893 0.96570 0.92278 0.95964 1.20872 0.97999 0.89958 0.98338 1.20879 1.00637 1.02654 0.98123 1.17450 0.90719 0.86021 0.95593 1.91428 1.66813 1.59114 1.94959 1.20919 1.06293 0.97658 1.03590 1.19154 0.93072 0.88968 0.91100 1.83909 1.62799 1.38088 1.25926 1.21753 1.22480 1.13978 0.91025 0.88374 1.26363 0.98011 0.94342 1.02040 1.70114 1.35254 1.13613 1.35172 0.84683 0.78196 0.78434 0.75609 1.18812 1.19537 1.18261 0.93579 0.91545 0.93975 0.90092 0.91781 0.91851 0.93077 0.87672 0.86580 0.75468 0.75056 0.82936 0.82433 0.84594 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.03 71.98 0.65 -2.13 16 2 C -0.06 -0.97 3.07 -10.79 -0.03 -1.00 16 3 C -0.14 -1.84 9.17 71.98 0.66 -1.18 16 4 C -0.15 -2.54 5.07 -10.80 -0.05 -2.59 16 5 H 0.11 1.89 8.11 -2.39 -0.02 1.87 16 6 C -0.17 -2.71 10.10 30.59 0.31 -2.40 16 7 C 0.08 1.84 5.64 44.99 0.25 2.09 16 8 H 0.12 3.20 6.86 -2.39 -0.02 3.18 16 9 N -0.70 -18.74 5.57 -457.80 -2.55 -21.29 16 10 C 0.71 24.80 8.41 179.06 1.51 26.31 16 11 O -0.61 -24.41 13.32 -4.03 -0.05 -24.46 16 12 N -0.67 -25.05 5.20 -316.70 -1.65 -26.69 16 13 C 0.08 3.30 6.33 38.22 0.24 3.55 16 14 C -0.05 -1.93 8.70 22.37 0.19 -1.73 16 15 C -0.20 -7.14 10.02 22.33 0.22 -6.92 16 16 C 0.12 4.76 7.29 22.37 0.16 4.92 16 17 F -0.14 -5.30 17.26 44.97 0.78 -4.52 16 18 C -0.26 -11.67 9.14 22.42 0.20 -11.46 16 19 C 0.13 6.19 6.66 22.69 0.15 6.35 16 20 O -0.20 -10.96 9.31 -22.79 -0.21 -11.17 16 21 C -0.42 -22.64 9.49 67.92 0.64 -21.99 16 22 H 0.10 5.02 5.20 -2.91 -0.02 5.01 16 23 C -0.01 -0.42 5.49 84.83 0.47 0.05 16 24 N -0.90 -50.60 13.67 21.61 0.30 -50.31 16 25 Si 1.01 40.64 29.55 68.60 2.03 42.67 16 26 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 27 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 28 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 0.93 7.29 -2.39 -0.02 0.91 16 32 H 0.08 1.13 7.90 -2.39 -0.02 1.11 16 33 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.12 1.53 8.05 -2.39 -0.02 1.51 16 38 H 0.41 9.24 8.85 -92.70 -0.82 8.42 16 39 H 0.41 15.01 8.58 -92.71 -0.80 14.21 16 40 H 0.15 5.54 6.19 -2.91 -0.02 5.53 16 41 H 0.16 4.46 8.06 -2.91 -0.02 4.43 16 42 H 0.14 6.09 5.64 -2.92 -0.02 6.07 16 43 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -64.78 366.72 3.67 -61.10 By element: Atomic # 1 Polarization: 43.36 SS G_CDS: -0.55 Total: 42.82 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 5.58 Total: -8.14 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -3.90 Total: -98.29 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.27 Total: -35.64 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.78 Total: -4.52 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -64.78 3.67 -61.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838982430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.823 kcal (2) G-P(sol) polarization free energy of solvation -64.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds