Wall clock time and date at job start Tue Mar 31 2020 14:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35893 * 117.00344 * 2 1 4 4 C 1.38731 * 120.05885 * 179.97438 * 3 2 1 5 5 C 1.38151 * 119.94664 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.05108 * 0.02562 * 5 4 3 7 7 C 1.50710 * 119.94067 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.46548 * 90.00160 * 7 6 5 9 9 C 1.34779 * 119.99906 * 179.97438 * 8 7 6 10 10 S 1.71207 * 119.99707 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00319 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99778 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.46821 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47345 * 300.00029 * 13 12 11 15 15 C 1.52997 * 109.47291 * 60.00105 * 13 12 11 16 16 C 1.50706 * 109.47365 * 180.02562 * 13 12 11 17 17 H 1.08003 * 119.99244 * 1.35112 * 16 13 12 18 18 C 1.37876 * 120.00140 * 181.34561 * 16 13 12 19 19 N 1.31509 * 119.99877 * 193.97871 * 18 16 13 20 20 Si 1.86801 * 120.00179 * 13.97917 * 18 16 13 21 21 H 1.48502 * 109.47020 * 84.54648 * 20 18 16 22 22 H 1.48495 * 109.47144 * 204.54643 * 20 18 16 23 23 H 1.48502 * 109.46930 * 324.54819 * 20 18 16 24 24 C 1.38262 * 120.11712 * 0.25637 * 6 5 4 25 25 C 1.38148 * 120.05500 * 359.44793 * 24 6 5 26 26 H 1.09007 * 109.47167 * 300.00194 * 1 2 3 27 27 H 1.09006 * 109.46938 * 59.99851 * 1 2 3 28 28 H 1.09000 * 109.47901 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.02503 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.97211 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.47100 * 210.00174 * 7 6 5 32 32 H 1.08993 * 109.47212 * 330.00567 * 7 6 5 33 33 H 0.96998 * 120.00747 * 0.02562 * 8 7 6 34 34 H 0.97000 * 119.99783 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.47370 * 300.00248 * 12 11 9 36 36 H 1.08997 * 109.47151 * 60.00353 * 12 11 9 37 37 H 1.09003 * 109.46876 * 69.37089 * 14 13 12 38 38 H 1.08999 * 109.47600 * 189.36496 * 14 13 12 39 39 H 1.08996 * 109.47374 * 309.36960 * 14 13 12 40 40 H 1.09000 * 109.46886 * 59.99870 * 15 13 12 41 41 H 1.08999 * 109.47393 * 179.97438 * 15 13 12 42 42 H 1.08998 * 109.47451 * 299.99752 * 15 13 12 43 43 H 0.97000 * 119.99890 * 180.02562 * 19 18 16 44 44 H 1.07997 * 119.97371 * 179.70519 * 24 6 5 45 45 H 1.07996 * 120.03272 * 180.25333 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0562 2.5169 0.0011 6 6 3.3020 3.6756 0.0016 7 6 3.9862 5.0185 0.0028 8 7 4.2083 5.4544 -1.3781 9 6 4.8095 6.6354 -1.6235 10 16 5.3143 7.6259 -0.3213 11 7 5.0135 7.0368 -2.8938 12 6 5.6675 8.3204 -3.1604 13 6 5.7748 8.5338 -4.6716 14 6 6.5999 7.4030 -5.2891 15 6 4.3740 8.5378 -5.2868 16 6 6.4481 9.8539 -4.9459 17 1 6.7872 10.4680 -4.1247 18 6 6.6314 10.2775 -6.2452 19 7 7.4486 11.2752 -6.5024 20 14 5.7189 9.4342 -7.6400 21 1 4.3653 10.0294 -7.7773 22 1 6.4715 9.6186 -8.9068 23 1 5.5944 7.9841 -7.3448 24 6 1.9212 3.6047 0.0070 25 6 1.2915 2.3751 0.0003 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 4.0208 0.3798 0.0005 30 1 5.1346 2.5749 0.0011 31 1 3.3581 5.7459 0.5169 32 1 4.9440 4.9378 0.5168 33 1 3.9221 4.8935 -2.1159 34 1 4.7272 6.4759 -3.6316 35 1 5.0795 9.1260 -2.7208 36 1 6.6653 8.3177 -2.7217 37 1 6.0357 6.4718 -5.2378 38 1 6.8174 7.6389 -6.3308 39 1 7.5342 7.2926 -4.7389 40 1 3.7862 9.3434 -4.8469 41 1 4.4504 8.6903 -6.3634 42 1 3.8873 7.5828 -5.0885 43 1 7.5772 11.5734 -7.4164 44 1 1.3344 4.5113 0.0122 45 1 0.2130 2.3202 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840846797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:19 Heat of formation + Delta-G solvation = 16.785393 kcal Electronic energy + Delta-G solvation = -24131.610198 eV Core-core repulsion = 20662.289256 eV Total energy + Delta-G solvation = -3469.320942 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.64556 -39.13135 -38.13446 -36.63089 -34.13383 -31.86085 -31.55626 -30.90136 -28.14895 -26.63786 -26.46715 -25.42261 -24.66968 -23.25098 -23.10433 -21.65431 -19.52534 -18.68167 -18.30153 -16.82354 -16.72707 -16.21251 -16.15978 -15.77914 -15.24097 -15.10163 -14.83208 -14.42905 -14.29683 -14.23001 -13.96321 -13.46694 -13.08477 -13.01671 -12.79615 -12.48963 -12.32838 -12.24024 -12.09867 -11.88839 -11.54179 -11.29673 -10.94917 -10.81096 -10.54403 -10.34299 -10.24517 -10.15579 -9.45484 -9.23345 -8.80421 -8.79387 -8.66173 -8.52601 -7.55228 -7.09292 -6.19194 -4.17067 0.82927 0.90662 1.73314 2.29398 2.78103 2.86080 3.17617 3.24299 3.33490 3.38359 3.86259 4.29588 4.30482 4.35068 4.42994 4.59893 4.65164 4.89662 4.93228 4.97823 5.09936 5.16008 5.36113 5.49121 5.59848 5.62928 5.80002 5.87600 5.88314 5.96147 6.09901 6.16691 6.19343 6.25196 6.28907 6.40362 6.49137 6.58570 6.71303 6.84364 6.89779 7.02103 7.14240 7.30950 7.55573 7.65856 8.39456 8.87756 9.43507 10.93656 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019861 B = 0.002449 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.445592 B =11429.552052 C =12284.278114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.134 3.866 4 C -0.155 4.155 5 C -0.057 4.057 6 C -0.149 4.149 7 C 0.176 3.824 8 N -0.694 5.694 9 C 0.559 3.441 10 S -0.659 6.659 11 N -0.669 5.669 12 C 0.145 3.855 13 C 0.028 3.972 14 C -0.144 4.144 15 C -0.150 4.150 16 C -0.512 4.512 17 H 0.081 0.919 18 C 0.076 3.924 19 N -0.887 5.887 20 Si 0.884 3.116 21 H -0.285 1.285 22 H -0.304 1.304 23 H -0.251 1.251 24 C -0.057 4.057 25 C -0.211 4.211 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.394 0.606 34 H 0.393 0.607 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.017 0.983 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.024 0.976 43 H 0.265 0.735 44 H 0.129 0.871 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.262 -23.432 10.289 29.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.089 3.911 4 C -0.173 4.173 5 C -0.076 4.076 6 C -0.150 4.150 7 C 0.053 3.947 8 N -0.326 5.326 9 C 0.198 3.802 10 S -0.535 6.535 11 N -0.295 5.295 12 C 0.023 3.977 13 C 0.026 3.974 14 C -0.202 4.202 15 C -0.207 4.207 16 C -0.550 4.550 17 H 0.099 0.901 18 C -0.127 4.127 19 N -0.523 5.523 20 Si 0.717 3.283 21 H -0.213 1.213 22 H -0.233 1.233 23 H -0.178 1.178 24 C -0.075 4.075 25 C -0.230 4.230 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.230 0.770 34 H 0.230 0.770 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.043 0.957 43 H 0.075 0.925 44 H 0.147 0.853 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.694 -22.718 11.080 28.747 hybrid contribution -1.386 -1.258 -2.286 2.954 sum -15.080 -23.976 8.794 29.658 Atomic orbital electron populations 1.23091 0.78131 1.04129 1.01526 1.86079 1.21616 1.26950 1.88446 1.19131 0.92455 0.84211 0.95337 1.20464 0.91363 0.98795 1.06694 1.20987 1.00216 0.90800 0.95578 1.19863 0.93725 0.94803 1.06612 1.20368 1.01747 0.91474 0.81144 1.45018 1.59620 1.18130 1.09864 1.22189 0.82084 0.85625 0.90333 1.93407 1.70155 1.56523 1.33415 1.45625 1.56775 1.23526 1.03594 1.22023 0.97875 0.80260 0.97551 1.18797 0.92323 0.96737 0.89513 1.22344 0.99658 0.96114 1.02060 1.22403 0.98861 0.98944 1.00446 1.20647 1.38441 1.01975 0.93896 0.90099 1.24961 0.94306 0.94907 0.98486 1.69940 1.33793 1.28100 1.20461 0.87322 0.79205 0.80725 0.81088 1.21319 1.23286 1.17773 1.20949 0.93859 0.97340 0.95380 1.21259 1.00221 0.92226 1.09306 0.92467 0.92512 0.88101 0.84924 0.84823 0.89044 0.88953 0.77049 0.76970 0.89864 0.89740 0.96405 0.92258 0.93102 0.92476 0.93796 0.95697 0.92468 0.85308 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.56 10.50 -19.40 -0.20 -2.77 16 3 C 0.13 1.12 6.69 -39.21 -0.26 0.86 16 4 C -0.15 -1.25 9.99 -39.43 -0.39 -1.64 16 5 C -0.06 -0.45 9.69 -39.60 -0.38 -0.83 16 6 C -0.15 -1.23 5.25 -104.60 -0.55 -1.78 16 7 C 0.18 1.74 5.25 -5.19 -0.03 1.71 16 8 N -0.69 -7.48 5.55 -63.21 -0.35 -7.83 16 9 C 0.56 8.35 7.98 -86.91 -0.69 7.66 16 10 S -0.66 -12.78 27.77 -107.50 -2.99 -15.77 16 11 N -0.67 -10.05 5.01 -62.03 -0.31 -10.36 16 12 C 0.14 2.75 3.94 -4.04 -0.02 2.73 16 13 C 0.03 0.58 0.50 -155.66 -0.08 0.50 16 14 C -0.14 -2.81 7.53 37.16 0.28 -2.53 16 15 C -0.15 -2.90 7.52 37.16 0.28 -2.62 16 16 C -0.51 -13.37 8.62 -34.44 -0.30 -13.67 16 17 H 0.08 2.34 7.99 -52.48 -0.42 1.92 16 18 C 0.08 2.08 5.32 -17.82 -0.09 1.99 16 19 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 20 Si 0.88 20.59 22.79 -169.99 -3.87 16.72 16 21 H -0.29 -6.65 7.10 56.52 0.40 -6.25 16 22 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.25 -5.29 4.65 56.52 0.26 -5.03 16 24 C -0.06 -0.44 9.69 -39.61 -0.38 -0.82 16 25 C -0.21 -1.57 9.04 -39.43 -0.36 -1.93 16 26 H 0.06 0.20 7.66 -51.93 -0.40 -0.19 16 27 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 28 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 30 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 31 H 0.09 0.99 7.93 -51.93 -0.41 0.58 16 32 H 0.09 1.00 7.93 -51.93 -0.41 0.59 16 33 H 0.39 3.37 8.48 -40.82 -0.35 3.02 16 34 H 0.39 5.04 6.27 -40.82 -0.26 4.78 16 35 H 0.08 1.71 7.99 -51.93 -0.41 1.30 16 36 H 0.08 1.76 7.99 -51.93 -0.42 1.34 16 37 H 0.02 0.28 7.13 -51.93 -0.37 -0.09 16 38 H 0.06 1.24 4.30 -51.93 -0.22 1.02 16 39 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.04 0.91 2.25 -51.93 -0.12 0.79 16 42 H 0.02 0.39 6.86 -51.93 -0.36 0.03 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 45 H 0.13 0.71 6.30 -52.49 -0.33 0.38 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -32.32 364.91 -10.12 -42.44 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.68 Total: 6.66 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.99 Total: -9.27 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.11 Total: -43.51 kcal Atomic # 8 Polarization: -2.56 SS G_CDS: -0.20 Total: -2.77 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -3.87 Total: 16.72 kcal Atomic # 16 Polarization: -12.78 SS G_CDS: -2.99 Total: -15.77 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.32 -10.12 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840846797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.222 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds