Wall clock time and date at job start Tue Mar 31 2020 14:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35893 * 117.00344 * 2 1 4 4 C 1.38731 * 120.05885 * 179.97438 * 3 2 1 5 5 C 1.38151 * 119.94664 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.05108 * 0.02562 * 5 4 3 7 7 C 1.50710 * 119.94067 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.46548 * 90.00160 * 7 6 5 9 9 C 1.34779 * 119.99906 * 179.97438 * 8 7 6 10 10 S 1.71207 * 119.99707 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00319 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99778 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.46821 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47345 * 300.00029 * 13 12 11 15 15 C 1.52997 * 109.47291 * 60.00105 * 13 12 11 16 16 C 1.50706 * 109.47365 * 180.02562 * 13 12 11 17 17 H 1.08003 * 119.99244 * 1.35112 * 16 13 12 18 18 C 1.37876 * 120.00140 * 181.34561 * 16 13 12 19 19 N 1.31509 * 119.99877 * 193.97871 * 18 16 13 20 20 Si 1.86801 * 120.00179 * 13.97917 * 18 16 13 21 21 H 1.48502 * 109.47020 * 84.54648 * 20 18 16 22 22 H 1.48495 * 109.47144 * 204.54643 * 20 18 16 23 23 H 1.48502 * 109.46930 * 324.54819 * 20 18 16 24 24 C 1.38262 * 120.11712 * 0.25637 * 6 5 4 25 25 C 1.38148 * 120.05500 * 359.44793 * 24 6 5 26 26 H 1.09007 * 109.47167 * 300.00194 * 1 2 3 27 27 H 1.09006 * 109.46938 * 59.99851 * 1 2 3 28 28 H 1.09000 * 109.47901 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.02503 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.97211 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.47100 * 210.00174 * 7 6 5 32 32 H 1.08993 * 109.47212 * 330.00567 * 7 6 5 33 33 H 0.96998 * 120.00747 * 0.02562 * 8 7 6 34 34 H 0.97000 * 119.99783 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.47370 * 300.00248 * 12 11 9 36 36 H 1.08997 * 109.47151 * 60.00353 * 12 11 9 37 37 H 1.09003 * 109.46876 * 69.37089 * 14 13 12 38 38 H 1.08999 * 109.47600 * 189.36496 * 14 13 12 39 39 H 1.08996 * 109.47374 * 309.36960 * 14 13 12 40 40 H 1.09000 * 109.46886 * 59.99870 * 15 13 12 41 41 H 1.08999 * 109.47393 * 179.97438 * 15 13 12 42 42 H 1.08998 * 109.47451 * 299.99752 * 15 13 12 43 43 H 0.97000 * 119.99890 * 180.02562 * 19 18 16 44 44 H 1.07997 * 119.97371 * 179.70519 * 24 6 5 45 45 H 1.07996 * 120.03272 * 180.25333 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0562 2.5169 0.0011 6 6 3.3020 3.6756 0.0016 7 6 3.9862 5.0185 0.0028 8 7 4.2083 5.4544 -1.3781 9 6 4.8095 6.6354 -1.6235 10 16 5.3143 7.6259 -0.3213 11 7 5.0135 7.0368 -2.8938 12 6 5.6675 8.3204 -3.1604 13 6 5.7748 8.5338 -4.6716 14 6 6.5999 7.4030 -5.2891 15 6 4.3740 8.5378 -5.2868 16 6 6.4481 9.8539 -4.9459 17 1 6.7872 10.4680 -4.1247 18 6 6.6314 10.2775 -6.2452 19 7 7.4486 11.2752 -6.5024 20 14 5.7189 9.4342 -7.6400 21 1 4.3653 10.0294 -7.7773 22 1 6.4715 9.6186 -8.9068 23 1 5.5944 7.9841 -7.3448 24 6 1.9212 3.6047 0.0070 25 6 1.2915 2.3751 0.0003 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 4.0208 0.3798 0.0005 30 1 5.1346 2.5749 0.0011 31 1 3.3581 5.7459 0.5169 32 1 4.9440 4.9378 0.5168 33 1 3.9221 4.8935 -2.1159 34 1 4.7272 6.4759 -3.6316 35 1 5.0795 9.1260 -2.7208 36 1 6.6653 8.3177 -2.7217 37 1 6.0357 6.4718 -5.2378 38 1 6.8174 7.6389 -6.3308 39 1 7.5342 7.2926 -4.7389 40 1 3.7862 9.3434 -4.8469 41 1 4.4504 8.6903 -6.3634 42 1 3.8873 7.5828 -5.0885 43 1 7.5772 11.5734 -7.4164 44 1 1.3344 4.5113 0.0122 45 1 0.2130 2.3202 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840846797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:18 Heat of formation + Delta-G solvation = -4.493367 kcal Electronic energy + Delta-G solvation = -24132.532914 eV Core-core repulsion = 20662.289256 eV Total energy + Delta-G solvation = -3470.243659 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.22673 -40.33567 -39.01187 -37.85157 -35.48331 -33.69232 -32.16597 -31.74607 -28.69323 -28.07934 -27.72299 -27.10394 -25.94783 -24.55936 -23.66402 -22.31191 -21.17488 -19.65013 -19.12436 -18.10296 -17.96690 -17.34023 -17.19690 -16.66866 -16.47280 -16.23271 -15.82282 -15.63566 -15.32232 -15.00788 -14.84362 -14.58940 -14.55500 -14.31695 -14.01928 -13.79631 -13.57006 -13.49354 -12.86178 -12.58121 -12.41950 -12.36280 -12.20640 -12.14987 -12.00994 -11.96250 -11.79856 -11.70827 -11.09038 -10.62882 -10.44107 -10.03483 -9.97337 -9.26390 -9.04557 -8.62513 -8.28923 -6.30911 0.19310 0.33953 0.45769 0.98319 1.34936 1.37294 1.50352 1.66762 2.34023 2.34375 2.58344 2.88038 3.06505 3.62861 3.78452 3.91554 3.98925 4.17637 4.30457 4.34286 4.35601 4.38504 4.39101 4.56306 4.62656 4.69737 4.74569 4.75374 4.78786 4.79838 4.86615 4.94797 5.01640 5.04444 5.19308 5.22059 5.31305 5.43927 5.55101 5.57234 5.69359 5.72848 5.76488 5.95445 6.30354 6.39005 6.47644 6.74856 7.33188 8.88144 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019861 B = 0.002449 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.445592 B =11429.552052 C =12284.278114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.126 3.874 4 C -0.166 4.166 5 C -0.057 4.057 6 C -0.153 4.153 7 C 0.180 3.820 8 N -0.662 5.662 9 C 0.585 3.415 10 S -0.747 6.747 11 N -0.656 5.656 12 C 0.167 3.833 13 C 0.027 3.973 14 C -0.143 4.143 15 C -0.149 4.149 16 C -0.514 4.514 17 H 0.030 0.970 18 C 0.015 3.985 19 N -0.944 5.944 20 Si 0.945 3.055 21 H -0.282 1.282 22 H -0.317 1.317 23 H -0.203 1.203 24 C -0.058 4.058 25 C -0.213 4.213 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.117 0.883 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.413 0.587 34 H 0.412 0.588 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.049 0.951 41 H 0.036 0.964 42 H 0.072 0.928 43 H 0.264 0.736 44 H 0.139 0.861 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.014 -27.375 9.348 33.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.080 3.920 4 C -0.184 4.184 5 C -0.075 4.075 6 C -0.154 4.154 7 C 0.058 3.942 8 N -0.293 5.293 9 C 0.220 3.780 10 S -0.624 6.624 11 N -0.285 5.285 12 C 0.043 3.957 13 C 0.026 3.974 14 C -0.201 4.201 15 C -0.206 4.206 16 C -0.552 4.552 17 H 0.048 0.952 18 C -0.182 4.182 19 N -0.583 5.583 20 Si 0.774 3.226 21 H -0.210 1.210 22 H -0.247 1.247 23 H -0.127 1.127 24 C -0.076 4.076 25 C -0.231 4.231 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.135 0.865 29 H 0.157 0.843 30 H 0.161 0.839 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.252 0.748 34 H 0.252 0.748 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.157 0.843 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.499 -26.757 10.157 33.034 hybrid contribution -0.569 -0.113 -1.854 1.942 sum -17.068 -26.870 8.303 32.897 Atomic orbital electron populations 1.23354 0.76385 1.05604 1.02342 1.86061 1.23521 1.26982 1.88339 1.19347 0.92779 0.84728 0.95126 1.20638 0.91705 0.99167 1.06929 1.21086 1.00729 0.90590 0.95140 1.19657 0.93966 0.93705 1.08062 1.20358 1.01451 0.92330 0.80092 1.44994 1.56772 1.16267 1.11270 1.21534 0.81680 0.85990 0.88818 1.93672 1.73474 1.59318 1.35985 1.45099 1.56753 1.22507 1.04122 1.21412 0.96612 0.81497 0.96141 1.18708 0.93453 0.94432 0.90800 1.22259 0.99802 0.97284 1.00732 1.22327 0.97417 1.01437 0.99417 1.20941 1.37922 1.03882 0.92456 0.95166 1.25867 0.95021 0.95757 1.01586 1.70114 1.36388 1.30861 1.20979 0.86344 0.77261 0.82461 0.76539 1.20968 1.24673 1.12690 1.21098 0.93669 0.97983 0.94873 1.21459 1.01242 0.91699 1.08710 0.91616 0.91650 0.86475 0.84258 0.83948 0.89703 0.89732 0.74753 0.74757 0.92018 0.92208 0.91685 0.93489 0.93840 0.93230 0.94570 0.90931 0.92702 0.84271 0.83393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.34 -4.68 10.50 -92.35 -0.97 -5.65 16 3 C 0.13 1.81 6.69 22.51 0.15 1.96 16 4 C -0.17 -2.33 9.99 22.37 0.22 -2.10 16 5 C -0.06 -0.76 9.69 22.25 0.22 -0.54 16 6 C -0.15 -2.13 5.25 -19.85 -0.10 -2.23 16 7 C 0.18 3.20 5.25 85.64 0.45 3.65 16 8 N -0.66 -12.12 5.55 -353.89 -1.96 -14.09 16 9 C 0.59 16.21 7.98 179.05 1.43 17.64 16 10 S -0.75 -29.31 27.77 -56.49 -1.57 -30.88 16 11 N -0.66 -17.71 5.01 -350.17 -1.75 -19.46 16 12 C 0.17 6.25 3.94 86.38 0.34 6.59 16 13 C 0.03 1.10 0.50 -52.93 -0.03 1.07 16 14 C -0.14 -5.09 7.53 71.98 0.54 -4.55 16 15 C -0.15 -5.20 7.52 71.98 0.54 -4.66 16 16 C -0.51 -27.62 8.62 25.60 0.22 -27.40 16 17 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 18 C 0.02 0.85 5.32 84.66 0.45 1.30 16 19 N -0.94 -58.04 13.96 21.45 0.30 -57.74 16 20 Si 0.94 41.59 22.79 68.60 1.56 43.15 16 21 H -0.28 -12.22 7.10 99.48 0.71 -11.51 16 22 H -0.32 -14.57 7.11 99.48 0.71 -13.86 16 23 H -0.20 -7.39 4.65 99.48 0.46 -6.92 16 24 C -0.06 -0.72 9.69 22.25 0.22 -0.51 16 25 C -0.21 -2.55 9.04 22.37 0.20 -2.34 16 26 H 0.07 0.29 7.66 -2.38 -0.02 0.28 16 27 H 0.06 0.29 7.66 -2.38 -0.02 0.28 16 28 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 30 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 31 H 0.08 1.71 7.93 -2.39 -0.02 1.69 16 32 H 0.08 1.72 7.93 -2.39 -0.02 1.70 16 33 H 0.41 5.09 8.48 -92.71 -0.79 4.30 16 34 H 0.41 8.27 6.27 -92.71 -0.58 7.69 16 35 H 0.06 2.59 7.99 -2.39 -0.02 2.57 16 36 H 0.06 2.55 7.99 -2.39 -0.02 2.53 16 37 H 0.06 1.70 7.13 -2.39 -0.02 1.68 16 38 H 0.05 1.79 4.30 -2.39 -0.01 1.78 16 39 H 0.04 1.59 8.12 -2.39 -0.02 1.57 16 40 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.04 1.33 2.25 -2.39 -0.01 1.33 16 42 H 0.07 1.84 6.86 -2.39 -0.02 1.82 16 43 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 44 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 45 H 0.15 1.14 6.30 -2.91 -0.02 1.12 16 Total: -1.00 -75.41 364.91 0.98 -74.43 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -0.59 Total: 21.14 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 5.96 Total: -10.91 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -3.42 Total: -91.29 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.97 Total: -5.65 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.56 Total: 43.15 kcal Atomic # 16 Polarization: -29.31 SS G_CDS: -1.57 Total: -30.88 kcal Total: -75.41 0.98 -74.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840846797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.941 kcal (2) G-P(sol) polarization free energy of solvation -75.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds