Wall clock time and date at job start Tue Mar 31 2020 13:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46846 * 2 1 4 4 C 1.47195 * 109.46990 * 240.00103 * 2 1 3 5 5 N 2.60803 * 109.46998 * 240.00212 * 2 1 3 6 6 C 1.52996 * 109.47120 * 120.00148 * 2 1 3 7 7 C 1.52995 * 109.47051 * 185.34985 * 6 2 1 8 8 H 1.09008 * 109.47439 * 54.29504 * 7 6 2 9 9 O 1.42899 * 109.47178 * 294.29747 * 7 6 2 10 10 C 1.53002 * 109.47513 * 174.29444 * 7 6 2 11 11 N 1.46499 * 109.47617 * 184.99762 * 10 7 6 12 12 C 1.39921 * 119.99846 * 180.27444 * 11 10 7 13 13 C 1.38716 * 120.08486 * 359.45203 * 12 11 10 14 14 C 1.38213 * 120.01611 * 179.74574 * 13 12 11 15 15 C 1.38522 * 120.17955 * 0.55484 * 14 13 12 16 16 F 1.35093 * 119.92517 * 179.72191 * 15 14 13 17 17 C 1.38362 * 120.15839 * 359.69983 * 15 14 13 18 18 C 1.38719 * 119.97759 * 0.02562 * 17 15 14 19 19 O 1.35797 * 120.08470 * 179.97438 * 18 17 15 20 20 C 1.34806 * 117.00166 * 354.28841 * 19 18 17 21 21 H 1.08004 * 119.99921 * 5.06251 * 20 19 18 22 22 C 1.38627 * 120.00028 * 185.06688 * 20 19 18 23 23 N 1.31572 * 120.00352 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99823 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46749 * 59.99874 * 24 22 20 26 26 H 1.48497 * 109.46755 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47252 * 300.00078 * 24 22 20 28 28 H 1.08999 * 109.46582 * 300.00007 * 1 2 3 29 29 H 1.08996 * 109.46826 * 60.00097 * 1 2 3 30 30 H 1.08997 * 109.46596 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46864 * 185.45254 * 3 2 1 32 32 H 1.09004 * 109.47449 * 305.44488 * 3 2 1 33 33 H 1.08996 * 109.47041 * 65.45254 * 3 2 1 34 34 H 1.09002 * 109.47463 * 65.35020 * 6 2 1 35 35 H 1.09000 * 109.47075 * 305.34881 * 6 2 1 36 36 H 0.96706 * 113.99871 * 299.99822 * 9 7 6 37 37 H 1.09008 * 109.46832 * 64.99631 * 10 7 6 38 38 H 1.09000 * 109.46732 * 305.00255 * 10 7 6 39 39 H 0.96999 * 119.99675 * 0.02562 * 11 10 7 40 40 H 1.07999 * 119.98590 * 359.97438 * 13 12 11 41 41 H 1.07999 * 119.90875 * 180.27556 * 14 13 12 42 42 H 1.07997 * 120.00843 * 180.02562 * 17 15 14 43 43 H 0.96995 * 120.00507 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3994 -1.2294 -2.1295 6 6 2.0401 -0.7213 1.2492 7 6 3.5641 -0.6058 1.3182 8 1 3.8519 0.4441 1.2627 9 8 4.1458 -1.3176 0.2241 10 6 4.0616 -1.2019 2.6366 11 7 5.5054 -0.9849 2.7568 12 6 6.1915 -1.4505 3.8838 13 6 5.5043 -2.1078 4.8938 14 6 6.1842 -2.5719 6.0040 15 6 7.5503 -2.3724 6.1177 16 9 8.2088 -2.8232 7.2077 17 6 8.2422 -1.7131 5.1172 18 6 7.5672 -1.2496 3.9973 19 8 8.2440 -0.6018 3.0143 20 6 9.5463 -0.3366 3.2401 21 1 10.0261 -0.7085 4.1335 22 6 10.2697 0.4133 2.3258 23 7 9.6854 0.8660 1.2373 24 14 12.0741 0.7813 2.6391 25 1 12.8297 -0.4935 2.7354 26 1 12.6152 1.5936 1.5200 27 1 12.2120 1.5356 3.9108 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1256 1.4441 -0.0977 32 1 1.5992 1.9838 -0.8372 33 1 1.7586 1.9273 0.9348 34 1 1.7571 -1.7729 1.2026 35 1 1.6006 -0.2657 2.1366 36 1 3.9314 -2.2605 0.2098 37 1 3.8523 -2.2716 2.6536 38 1 3.5509 -0.7185 3.4695 39 1 5.9864 -0.5215 2.0533 40 1 4.4384 -2.2603 4.8107 41 1 5.6482 -3.0873 6.7872 42 1 9.3072 -1.5593 5.2081 43 1 10.1916 1.3904 0.5974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857242474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:24 Heat of formation + Delta-G solvation = -77.523721 kcal Electronic energy + Delta-G solvation = -26774.418359 eV Core-core repulsion = 22734.794691 eV Total energy + Delta-G solvation = -4039.623668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.06043 -39.61272 -39.03690 -36.98515 -36.28224 -34.94971 -34.24508 -32.29880 -30.55801 -29.27260 -28.02147 -27.75743 -25.43758 -25.36402 -23.06196 -22.14040 -21.28338 -20.99506 -18.18394 -17.61345 -17.45605 -16.54333 -16.16167 -15.96662 -15.36024 -15.14823 -14.99571 -14.83508 -14.52003 -14.22255 -13.97712 -13.95149 -13.70512 -13.54511 -13.31345 -13.10043 -12.93976 -12.68947 -12.45021 -12.26627 -12.12744 -12.05664 -11.91375 -11.78640 -11.48848 -11.44172 -11.31809 -11.25734 -10.83371 -10.77803 -10.57060 -10.40004 -9.99005 -9.57643 -9.27655 -8.84827 -7.75286 -6.48156 -6.44726 -4.02795 2.10798 2.22834 2.78618 2.84250 3.14126 3.14553 3.17368 3.68464 3.78452 3.95326 4.29812 4.39027 4.46341 4.50731 4.61852 4.91232 4.95366 4.96941 5.07139 5.08822 5.22570 5.27801 5.32004 5.39717 5.45490 5.50938 5.55794 5.60430 5.64311 5.73838 5.81953 5.86900 6.06659 6.09561 6.41862 6.56478 6.79911 7.01128 7.09846 7.24802 7.55456 7.60826 7.62363 7.91861 8.02859 8.41206 8.98676 9.64295 10.70234 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010884 B = 0.003521 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.007893 B = 7950.807973 C =10058.283441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.041 3.959 3 C -0.150 4.150 4 C 0.217 3.783 5 N -0.429 5.429 6 C -0.139 4.139 7 C 0.087 3.913 8 H 0.114 0.886 9 O -0.546 6.546 10 C 0.104 3.896 11 N -0.740 5.740 12 C 0.153 3.847 13 C -0.148 4.148 14 C -0.197 4.197 15 C 0.087 3.913 16 F -0.158 7.158 17 C -0.243 4.243 18 C 0.122 3.878 19 O -0.174 6.174 20 C -0.389 4.389 21 H 0.091 0.909 22 C 0.041 3.959 23 N -0.861 5.861 24 Si 0.939 3.061 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.371 0.629 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.413 0.587 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.138 0.862 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.226 -0.401 1.960 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.038 3.962 3 C -0.208 4.208 4 C -0.101 4.101 5 N -0.104 5.104 6 C -0.179 4.179 7 C 0.027 3.973 8 H 0.132 0.868 9 O -0.350 6.350 10 C -0.022 4.022 11 N -0.375 5.375 12 C 0.052 3.948 13 C -0.172 4.172 14 C -0.217 4.217 15 C 0.066 3.934 16 F -0.137 7.137 17 C -0.264 4.264 18 C 0.067 3.933 19 O -0.078 6.078 20 C -0.465 4.465 21 H 0.108 0.892 22 C -0.163 4.163 23 N -0.495 5.495 24 Si 0.764 3.236 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.218 0.782 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.250 0.750 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.155 0.845 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.555 -0.446 0.007 17.560 hybrid contribution 0.920 -0.154 0.760 1.203 sum -16.634 -0.600 0.767 16.663 Atomic orbital electron populations 1.21902 0.91583 1.03079 1.03436 1.18163 0.96180 0.94959 0.86934 1.22018 1.02889 0.92518 1.03374 1.28792 0.93171 0.93944 0.94199 1.81181 1.08349 1.08992 1.11900 1.22405 0.96630 1.01814 0.97008 1.22348 0.90738 0.98256 0.85943 0.86833 1.86727 1.75551 1.24897 1.47836 1.21823 0.83496 0.99781 0.97115 1.44200 1.05680 1.65662 1.21941 1.17093 0.88186 0.99908 0.89657 1.19892 0.98540 1.04523 0.94210 1.20272 0.92336 1.08627 1.00512 1.17233 0.90285 1.01183 0.84728 1.91375 1.81627 1.87761 1.52921 1.20790 1.01439 1.08364 0.95813 1.18603 0.89658 0.95718 0.89348 1.83901 1.24034 1.64915 1.34905 1.21242 0.82568 1.34099 1.08562 0.89163 1.25240 1.00233 0.95797 0.95049 1.70014 1.36971 1.33152 1.09386 0.85799 0.80563 0.78926 0.78301 1.19496 1.20293 1.19477 0.90410 0.91667 0.91776 0.90785 0.91667 0.90374 0.90392 0.88486 0.78182 0.92866 0.92070 0.75017 0.86316 0.86614 0.84483 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 8.43 37.16 0.31 -0.35 16 2 C 0.04 0.29 0.74 -157.30 -0.12 0.17 16 3 C -0.15 -1.03 7.75 37.16 0.29 -0.75 16 4 C 0.22 2.41 11.61 -20.76 -0.24 2.17 16 5 N -0.43 -6.18 18.49 42.16 0.78 -5.41 16 6 C -0.14 -0.88 4.06 -26.74 -0.11 -0.99 16 7 C 0.09 0.87 2.65 -26.73 -0.07 0.80 16 8 H 0.11 1.23 6.14 -51.92 -0.32 0.91 16 9 O -0.55 -7.09 11.07 -35.23 -0.39 -7.48 16 10 C 0.10 1.20 4.55 -4.04 -0.02 1.19 16 11 N -0.74 -12.76 5.68 -58.45 -0.33 -13.09 16 12 C 0.15 3.01 6.67 -83.52 -0.56 2.46 16 13 C -0.15 -2.51 9.31 -39.41 -0.37 -2.88 16 14 C -0.20 -3.49 10.02 -39.49 -0.40 -3.89 16 15 C 0.09 1.75 7.29 -39.43 -0.29 1.46 16 16 F -0.16 -3.11 17.26 2.25 0.04 -3.07 16 17 C -0.24 -5.44 9.14 -39.36 -0.36 -5.80 16 18 C 0.12 2.86 6.67 -38.93 -0.26 2.60 16 19 O -0.17 -4.71 9.00 -0.03 0.00 -4.71 16 20 C -0.39 -10.66 9.49 30.88 0.29 -10.37 16 21 H 0.09 2.33 5.21 -52.48 -0.27 2.06 16 22 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 23 N -0.86 -24.61 13.67 55.48 0.76 -23.85 16 24 Si 0.94 20.51 29.55 -169.99 -5.02 15.48 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.67 6.54 -51.93 -0.34 0.33 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.37 4.04 9.05 45.56 0.41 4.46 16 37 H 0.05 0.58 7.96 -51.92 -0.41 0.16 16 38 H 0.06 0.62 7.94 -51.93 -0.41 0.21 16 39 H 0.41 8.22 7.84 -40.82 -0.32 7.90 16 40 H 0.12 1.62 6.73 -52.49 -0.35 1.27 16 41 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.14 3.13 5.64 -52.49 -0.30 2.83 16 43 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -32.69 366.33 -5.46 -38.15 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -4.83 Total: 11.62 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.98 Total: -13.16 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 1.21 Total: -42.35 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.39 Total: -12.19 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.69 -5.46 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857242474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.373 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds