Wall clock time and date at job start Tue Mar 31 2020 13:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46846 * 2 1 4 4 C 1.47195 * 109.46990 * 240.00103 * 2 1 3 5 5 N 2.60803 * 109.46998 * 240.00212 * 2 1 3 6 6 C 1.52996 * 109.47120 * 120.00148 * 2 1 3 7 7 C 1.52995 * 109.47051 * 185.34985 * 6 2 1 8 8 H 1.09008 * 109.47439 * 54.29504 * 7 6 2 9 9 O 1.42899 * 109.47178 * 294.29747 * 7 6 2 10 10 C 1.53002 * 109.47513 * 174.29444 * 7 6 2 11 11 N 1.46499 * 109.47617 * 184.99762 * 10 7 6 12 12 C 1.39921 * 119.99846 * 180.27444 * 11 10 7 13 13 C 1.38716 * 120.08486 * 359.45203 * 12 11 10 14 14 C 1.38213 * 120.01611 * 179.74574 * 13 12 11 15 15 C 1.38522 * 120.17955 * 0.55484 * 14 13 12 16 16 F 1.35093 * 119.92517 * 179.72191 * 15 14 13 17 17 C 1.38362 * 120.15839 * 359.69983 * 15 14 13 18 18 C 1.38719 * 119.97759 * 0.02562 * 17 15 14 19 19 O 1.35797 * 120.08470 * 179.97438 * 18 17 15 20 20 C 1.34806 * 117.00166 * 354.28841 * 19 18 17 21 21 H 1.08004 * 119.99921 * 5.06251 * 20 19 18 22 22 C 1.38627 * 120.00028 * 185.06688 * 20 19 18 23 23 N 1.31572 * 120.00352 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99823 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46749 * 59.99874 * 24 22 20 26 26 H 1.48497 * 109.46755 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47252 * 300.00078 * 24 22 20 28 28 H 1.08999 * 109.46582 * 300.00007 * 1 2 3 29 29 H 1.08996 * 109.46826 * 60.00097 * 1 2 3 30 30 H 1.08997 * 109.46596 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46864 * 185.45254 * 3 2 1 32 32 H 1.09004 * 109.47449 * 305.44488 * 3 2 1 33 33 H 1.08996 * 109.47041 * 65.45254 * 3 2 1 34 34 H 1.09002 * 109.47463 * 65.35020 * 6 2 1 35 35 H 1.09000 * 109.47075 * 305.34881 * 6 2 1 36 36 H 0.96706 * 113.99871 * 299.99822 * 9 7 6 37 37 H 1.09008 * 109.46832 * 64.99631 * 10 7 6 38 38 H 1.09000 * 109.46732 * 305.00255 * 10 7 6 39 39 H 0.96999 * 119.99675 * 0.02562 * 11 10 7 40 40 H 1.07999 * 119.98590 * 359.97438 * 13 12 11 41 41 H 1.07999 * 119.90875 * 180.27556 * 14 13 12 42 42 H 1.07997 * 120.00843 * 180.02562 * 17 15 14 43 43 H 0.96995 * 120.00507 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3994 -1.2294 -2.1295 6 6 2.0401 -0.7213 1.2492 7 6 3.5641 -0.6058 1.3182 8 1 3.8519 0.4441 1.2627 9 8 4.1458 -1.3176 0.2241 10 6 4.0616 -1.2019 2.6366 11 7 5.5054 -0.9849 2.7568 12 6 6.1915 -1.4505 3.8838 13 6 5.5043 -2.1078 4.8938 14 6 6.1842 -2.5719 6.0040 15 6 7.5503 -2.3724 6.1177 16 9 8.2088 -2.8232 7.2077 17 6 8.2422 -1.7131 5.1172 18 6 7.5672 -1.2496 3.9973 19 8 8.2440 -0.6018 3.0143 20 6 9.5463 -0.3366 3.2401 21 1 10.0261 -0.7085 4.1335 22 6 10.2697 0.4133 2.3258 23 7 9.6854 0.8660 1.2373 24 14 12.0741 0.7813 2.6391 25 1 12.8297 -0.4935 2.7354 26 1 12.6152 1.5936 1.5200 27 1 12.2120 1.5356 3.9108 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1256 1.4441 -0.0977 32 1 1.5992 1.9838 -0.8372 33 1 1.7586 1.9273 0.9348 34 1 1.7571 -1.7729 1.2026 35 1 1.6006 -0.2657 2.1366 36 1 3.9314 -2.2605 0.2098 37 1 3.8523 -2.2716 2.6536 38 1 3.5509 -0.7185 3.4695 39 1 5.9864 -0.5215 2.0533 40 1 4.4384 -2.2603 4.8107 41 1 5.6482 -3.0873 6.7872 42 1 9.3072 -1.5593 5.2081 43 1 10.1916 1.3904 0.5974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857242474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:23 Heat of formation + Delta-G solvation = -100.983989 kcal Electronic energy + Delta-G solvation = -26775.435673 eV Core-core repulsion = 22734.794691 eV Total energy + Delta-G solvation = -4040.640982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.62045 -40.91320 -40.13536 -38.33045 -37.53285 -35.79186 -35.53026 -34.26371 -31.54350 -30.89508 -29.19759 -28.24004 -27.32093 -26.39477 -24.06554 -23.26054 -22.52455 -22.33215 -19.99213 -19.27502 -18.29011 -17.79908 -17.24402 -17.04042 -16.90910 -16.53701 -16.39310 -15.95407 -15.77558 -15.43817 -15.36038 -15.23788 -14.96555 -14.75027 -14.57258 -14.28249 -13.94887 -13.76814 -13.60786 -13.47550 -13.14425 -13.10387 -12.85932 -12.80278 -12.58184 -12.43619 -12.36841 -12.23610 -12.11823 -12.07320 -11.90955 -11.51221 -11.43634 -10.81904 -10.78954 -10.65904 -9.40891 -8.46178 -7.97597 -6.08866 0.51828 0.64859 1.33812 1.42956 1.48438 1.94050 2.01406 2.16061 2.60381 2.79588 3.04368 3.12515 3.36747 3.48130 3.65557 3.70191 3.87349 4.04118 4.05091 4.22929 4.25724 4.27912 4.41746 4.54955 4.70441 4.72395 4.84918 4.86223 4.96920 5.00767 5.03403 5.04549 5.12761 5.15321 5.19650 5.35582 5.39096 5.46768 5.47198 5.49725 5.96692 6.07695 6.61198 6.72770 6.79302 6.87342 6.99248 7.77281 8.75221 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010884 B = 0.003521 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.007893 B = 7950.807973 C =10058.283441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.042 3.958 3 C -0.151 4.151 4 C 0.238 3.762 5 N -0.499 5.499 6 C -0.128 4.128 7 C 0.086 3.914 8 H 0.100 0.900 9 O -0.576 6.576 10 C 0.098 3.902 11 N -0.744 5.744 12 C 0.154 3.846 13 C -0.134 4.134 14 C -0.163 4.163 15 C 0.060 3.940 16 F -0.157 7.157 17 C -0.249 4.249 18 C 0.076 3.924 19 O -0.217 6.217 20 C -0.410 4.410 21 H 0.092 0.908 22 C -0.015 4.015 23 N -0.912 5.912 24 Si 1.009 2.991 25 H -0.262 1.262 26 H -0.271 1.271 27 H -0.259 1.259 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.377 0.623 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.395 0.605 40 H 0.169 0.831 41 H 0.158 0.842 42 H 0.118 0.882 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.529 -1.032 4.637 22.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.038 3.962 3 C -0.209 4.209 4 C -0.079 4.079 5 N -0.175 5.175 6 C -0.167 4.167 7 C 0.027 3.973 8 H 0.118 0.882 9 O -0.382 6.382 10 C -0.025 4.025 11 N -0.375 5.375 12 C 0.051 3.949 13 C -0.158 4.158 14 C -0.183 4.183 15 C 0.039 3.961 16 F -0.136 7.136 17 C -0.271 4.271 18 C 0.023 3.977 19 O -0.124 6.124 20 C -0.486 4.486 21 H 0.110 0.890 22 C -0.214 4.214 23 N -0.550 5.550 24 Si 0.829 3.171 25 H -0.187 1.187 26 H -0.195 1.195 27 H -0.184 1.184 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.153 0.847 36 H 0.225 0.775 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.229 0.771 40 H 0.186 0.814 41 H 0.176 0.824 42 H 0.136 0.864 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.927 -1.112 2.726 21.133 hybrid contribution 1.687 -0.078 0.097 1.692 sum -19.240 -1.190 2.824 19.482 Atomic orbital electron populations 1.21923 0.89010 1.03838 1.04768 1.18503 0.97958 0.94369 0.85342 1.22052 1.00949 0.92839 1.05044 1.29753 0.91399 0.92552 0.94183 1.81188 1.10710 1.11383 1.14215 1.22388 0.93281 1.03110 0.97877 1.22449 0.93329 0.97072 0.84459 0.88192 1.86719 1.76593 1.25594 1.49266 1.22210 0.80133 1.01329 0.98876 1.44521 1.07927 1.64602 1.20479 1.17469 0.87145 0.99297 0.90989 1.20419 1.00664 1.02296 0.92424 1.20825 0.91009 1.05500 1.00930 1.17361 0.91515 1.02523 0.84663 1.91373 1.81870 1.87762 1.52582 1.20849 1.00929 1.08667 0.96613 1.19156 0.91532 0.97246 0.89720 1.83869 1.23982 1.67570 1.36951 1.21615 0.83507 1.34546 1.08929 0.89033 1.26364 1.04898 0.95461 0.94646 1.70150 1.38880 1.35195 1.10806 0.84774 0.74679 0.79015 0.78591 1.18701 1.19514 1.18382 0.87499 0.91995 0.91321 0.93744 0.91515 0.87507 0.88974 0.84713 0.77526 0.91040 0.89067 0.77137 0.81370 0.82424 0.86390 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.43 71.98 0.61 -0.17 16 2 C 0.04 0.48 0.74 -53.99 -0.04 0.44 16 3 C -0.15 -1.82 7.75 71.98 0.56 -1.26 16 4 C 0.24 5.20 11.61 89.44 1.04 6.24 16 5 N -0.50 -14.86 18.49 20.01 0.37 -14.49 16 6 C -0.13 -1.12 4.06 30.59 0.12 -0.99 16 7 C 0.09 1.57 2.65 30.59 0.08 1.65 16 8 H 0.10 2.12 6.14 -2.38 -0.01 2.10 16 9 O -0.58 -15.11 11.07 -148.98 -1.65 -16.76 16 10 C 0.10 1.94 4.55 86.38 0.39 2.34 16 11 N -0.74 -25.09 5.68 -338.85 -1.92 -27.01 16 12 C 0.15 5.90 6.67 38.27 0.26 6.15 16 13 C -0.13 -3.97 9.31 22.38 0.21 -3.76 16 14 C -0.16 -5.05 10.02 22.33 0.22 -4.82 16 15 C 0.06 2.35 7.29 22.37 0.16 2.52 16 16 F -0.16 -5.95 17.26 44.97 0.78 -5.17 16 17 C -0.25 -11.47 9.14 22.41 0.20 -11.26 16 18 C 0.08 3.68 6.67 22.69 0.15 3.83 16 19 O -0.22 -12.53 9.00 -23.01 -0.21 -12.74 16 20 C -0.41 -23.88 9.49 67.91 0.64 -23.23 16 21 H 0.09 5.06 5.21 -2.91 -0.02 5.05 16 22 C -0.02 -0.88 5.49 84.82 0.47 -0.41 16 23 N -0.91 -55.30 13.67 21.61 0.30 -55.00 16 24 Si 1.01 43.72 29.55 68.60 2.03 45.75 16 25 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 28 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.04 0.81 6.54 -2.39 -0.02 0.80 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.38 8.21 9.05 -74.05 -0.67 7.55 16 37 H 0.07 1.21 7.96 -2.38 -0.02 1.19 16 38 H 0.09 1.33 7.94 -2.39 -0.02 1.31 16 39 H 0.40 16.40 7.84 -92.71 -0.73 15.67 16 40 H 0.17 3.35 6.73 -2.91 -0.02 3.33 16 41 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 42 H 0.12 5.72 5.64 -2.91 -0.02 5.71 16 43 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -79.41 366.33 4.44 -74.97 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -0.33 Total: 33.22 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 5.08 Total: -22.75 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -1.26 Total: -96.51 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -1.86 Total: -29.50 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.78 Total: -5.17 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -79.41 4.44 -74.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857242474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.016 kcal (2) G-P(sol) polarization free energy of solvation -79.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds