Wall clock time and date at job start Tue Mar 31 2020 14:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47092 * 239.99925 * 2 1 3 5 5 C 1.50696 * 109.47300 * 60.00169 * 4 2 1 6 6 O 1.21279 * 119.99697 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00141 * 179.97438 * 5 4 2 8 8 C 1.46496 * 119.99875 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.47283 * 180.02562 * 8 7 5 10 10 O 1.21296 * 119.99622 * 359.97438 * 9 8 7 11 11 N 1.34769 * 120.00461 * 180.02562 * 9 8 7 12 12 C 1.37100 * 120.00404 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99664 * 0.02562 * 12 11 9 14 14 C 1.38948 * 120.00074 * 179.97438 * 12 11 9 15 15 N 1.31402 * 120.00158 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99894 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47104 * 89.99771 * 16 14 12 18 18 H 1.48500 * 109.47256 * 210.00069 * 16 14 12 19 19 H 1.48506 * 109.46930 * 329.99910 * 16 14 12 20 20 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 21 21 C 1.38243 * 119.97334 * 119.72959 * 20 2 1 22 22 C 1.38205 * 120.01946 * 179.72574 * 21 20 2 23 23 C 1.38458 * 119.97681 * 0.56554 * 22 21 20 24 24 F 1.35095 * 120.02756 * 179.67909 * 23 22 21 25 25 C 1.38461 * 119.94484 * 359.70854 * 23 22 21 26 26 C 1.38193 * 119.97683 * 359.97438 * 25 23 22 27 27 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 28 28 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 29 29 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 32 32 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 33 33 H 1.09004 * 109.46930 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.47059 * 299.99666 * 4 2 1 35 35 H 0.96999 * 120.00043 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.47565 * 300.00629 * 8 7 5 37 37 H 1.09004 * 109.47374 * 60.00435 * 8 7 5 38 38 H 0.97003 * 120.00232 * 359.97438 * 11 9 8 39 39 H 0.97001 * 120.00548 * 179.97438 * 15 14 12 40 40 H 1.07997 * 119.99090 * 359.97438 * 21 20 2 41 41 H 1.08005 * 120.01097 * 180.24824 * 22 21 20 42 42 H 1.08008 * 120.00980 * 179.97438 * 25 23 22 43 43 H 1.08007 * 119.98852 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 8 0.8401 0.9749 -2.3684 7 7 1.8637 -0.4711 -3.7038 8 6 1.3750 0.2192 -4.8999 9 6 1.8774 -0.4911 -6.1304 10 8 2.5755 -1.4768 -6.0191 11 7 1.5519 -0.0307 -7.3545 12 6 2.0094 -0.6766 -8.4739 13 1 2.6303 -1.5547 -8.3748 14 6 1.6733 -0.2021 -9.7359 15 7 0.9166 0.8653 -9.8565 16 14 2.2961 -1.0827 -11.2612 17 1 1.3183 -2.1248 -11.6650 18 1 2.4606 -0.1036 -12.3655 19 1 3.6046 -1.7196 -10.9654 20 6 2.0323 -0.7105 1.2305 21 6 2.8224 -1.8377 1.1030 22 6 3.2883 -2.4867 2.2307 23 6 2.9538 -2.0144 3.4885 24 9 3.4033 -2.6518 4.5916 25 6 2.1577 -0.8886 3.6149 26 6 1.6984 -0.2374 2.4858 27 1 -0.3633 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7217 -1.2490 34 1 1.6767 -1.7490 -1.2492 35 1 2.4214 -1.2598 -3.7928 36 1 0.2850 0.2185 -4.9000 37 1 1.7376 1.2471 -4.8999 38 1 0.9939 0.7578 -7.4436 39 1 0.6823 1.1968 -10.7375 40 1 3.0790 -2.2089 0.1218 41 1 3.9089 -3.3650 2.1309 42 1 1.8957 -0.5195 4.5956 43 1 1.0777 0.6410 2.5841 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868315494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:17 Heat of formation + Delta-G solvation = -104.546355 kcal Electronic energy + Delta-G solvation = -26126.869928 eV Core-core repulsion = 22086.074470 eV Total energy + Delta-G solvation = -4040.795458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.13845 -40.62656 -39.28138 -38.21409 -35.87954 -34.45072 -33.71492 -31.64135 -31.42151 -29.85696 -29.06419 -27.26380 -26.92948 -24.51842 -23.30241 -23.02182 -20.54783 -19.80279 -19.26411 -18.16113 -18.08076 -17.13889 -16.49207 -15.90377 -15.84650 -15.62312 -15.57020 -15.17037 -14.78839 -14.49149 -14.36556 -14.12357 -13.89147 -13.84269 -13.65488 -13.42353 -13.16168 -12.57312 -12.53605 -12.21797 -12.17122 -11.87657 -11.66487 -11.58790 -11.33493 -11.17823 -11.13421 -11.05329 -10.75107 -10.48737 -10.34945 -9.67105 -9.45554 -9.40053 -8.84079 -8.75695 -8.67525 -8.13907 -6.54915 -3.97092 0.86390 0.93608 2.75580 3.09173 3.19452 3.23335 3.29383 3.32440 3.70164 3.98949 4.08116 4.29491 4.42471 4.59509 4.66343 4.82319 4.83879 4.93563 4.97004 5.13567 5.13763 5.22601 5.41230 5.50528 5.58881 5.68830 5.69053 5.79891 5.83094 5.85493 5.91739 5.93270 5.96102 6.01716 6.03142 6.27567 6.37183 6.37758 6.60005 6.72985 7.42677 7.75889 7.88455 8.39294 8.43338 9.01102 9.35484 9.83164 10.61862 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.030635 B = 0.002032 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.779351 B =13779.312725 C =14496.732967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.004 4.004 3 C -0.151 4.151 4 C -0.137 4.137 5 C 0.513 3.487 6 O -0.541 6.541 7 N -0.707 5.707 8 C 0.109 3.891 9 C 0.427 3.573 10 O -0.598 6.598 11 N -0.549 5.549 12 C -0.306 4.306 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.894 5.894 16 Si 0.933 3.067 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.269 1.269 20 C -0.074 4.074 21 C -0.096 4.096 22 C -0.149 4.149 23 C 0.086 3.914 24 F -0.144 7.144 25 C -0.151 4.151 26 C -0.085 4.085 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.411 0.589 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.396 0.604 39 H 0.274 0.726 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.946 -1.333 23.005 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.004 4.004 3 C -0.208 4.208 4 C -0.177 4.177 5 C 0.300 3.700 6 O -0.420 6.420 7 N -0.361 5.361 8 C -0.019 4.019 9 C 0.212 3.788 10 O -0.485 6.485 11 N -0.183 5.183 12 C -0.435 4.435 13 H 0.123 0.877 14 C -0.177 4.177 15 N -0.534 5.534 16 Si 0.760 3.240 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.074 4.074 21 C -0.114 4.114 22 C -0.168 4.168 23 C 0.067 3.933 24 F -0.122 7.122 25 C -0.170 4.170 26 C -0.103 4.103 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.248 0.752 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.863 -1.207 22.973 23.021 hybrid contribution 0.336 -0.496 -0.667 0.896 sum 1.199 -1.703 22.306 22.403 Atomic orbital electron populations 1.22146 0.92777 1.01891 1.03983 1.19190 0.96615 0.95253 0.89341 1.22146 1.00365 0.94299 1.03979 1.21865 1.02690 1.00732 0.92387 1.20456 0.80448 0.84718 0.84408 1.90558 1.38390 1.26635 1.86414 1.45772 1.53172 1.32444 1.04692 1.20945 0.99876 0.96581 0.84497 1.19763 0.86705 0.87730 0.84573 1.90497 1.43086 1.28858 1.86059 1.41805 1.44935 1.27384 1.04210 1.19727 1.29703 1.11137 0.82935 0.87675 1.25331 0.96563 0.96352 0.99482 1.69606 1.35835 1.22532 1.25439 0.85810 0.79347 0.78740 0.80119 1.20246 1.20782 1.19308 1.20009 0.97193 0.95395 0.94819 1.21125 0.96769 0.94833 0.98689 1.21170 1.02661 1.01932 0.91054 1.17742 0.98890 0.93842 0.82793 1.91490 1.87643 1.81134 1.51975 1.21128 0.99833 0.95789 1.00273 1.20853 0.98920 0.99564 0.90940 0.92873 0.88903 0.93243 0.93241 0.88903 0.92879 0.88493 0.88497 0.75159 0.89870 0.89859 0.77037 0.91557 0.84450 0.84772 0.84903 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 7.99 37.16 0.30 -1.24 16 2 C 0.00 -0.03 0.60 -155.66 -0.09 -0.13 16 3 C -0.15 -1.54 7.99 37.16 0.30 -1.24 16 4 C -0.14 -1.34 3.43 -27.88 -0.10 -1.44 16 5 C 0.51 6.91 7.24 -10.99 -0.08 6.83 16 6 O -0.54 -8.42 11.35 5.56 0.06 -8.36 16 7 N -0.71 -10.65 5.53 -61.48 -0.34 -10.99 16 8 C 0.11 1.88 6.15 -5.19 -0.03 1.85 16 9 C 0.43 9.45 7.85 -10.99 -0.09 9.37 16 10 O -0.60 -14.85 15.24 5.54 0.08 -14.77 16 11 N -0.55 -13.29 5.29 -10.96 -0.06 -13.35 16 12 C -0.31 -8.16 9.68 -14.93 -0.14 -8.31 16 13 H 0.11 2.93 7.16 -52.48 -0.38 2.55 16 14 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 15 N -0.89 -23.52 13.05 55.50 0.72 -22.79 16 16 Si 0.93 20.24 29.55 -169.99 -5.02 15.22 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 C -0.07 -0.66 4.76 -104.62 -0.50 -1.15 16 21 C -0.10 -0.80 8.97 -39.59 -0.36 -1.16 16 22 C -0.15 -1.28 10.03 -39.51 -0.40 -1.68 16 23 C 0.09 0.81 7.30 -39.42 -0.29 0.53 16 24 F -0.14 -1.47 17.27 2.25 0.04 -1.44 16 25 C -0.15 -1.27 10.03 -39.52 -0.40 -1.67 16 26 C -0.08 -0.70 8.71 -39.60 -0.34 -1.05 16 27 H 0.05 0.48 7.39 -51.93 -0.38 0.09 16 28 H 0.09 1.16 5.51 -51.93 -0.29 0.87 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 1.16 5.51 -51.93 -0.29 0.87 16 32 H 0.05 0.48 7.39 -51.93 -0.38 0.09 16 33 H 0.10 0.81 7.52 -51.93 -0.39 0.42 16 34 H 0.10 0.81 7.50 -51.93 -0.39 0.42 16 35 H 0.41 6.10 7.44 -40.82 -0.30 5.80 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.40 9.22 7.90 -40.82 -0.32 8.89 16 39 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.14 0.94 5.89 -52.49 -0.31 0.63 16 41 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 42 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.13 0.91 7.10 -52.48 -0.37 0.54 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -29.98 358.11 -6.90 -36.88 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -5.47 Total: 14.13 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.31 Total: 0.08 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.33 Total: -47.14 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: 0.15 Total: -23.13 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.98 -6.90 -36.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868315494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.671 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds