Wall clock time and date at job start Tue Mar 31 2020 14:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47092 * 239.99925 * 2 1 3 5 5 C 1.50696 * 109.47300 * 60.00169 * 4 2 1 6 6 O 1.21279 * 119.99697 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00141 * 179.97438 * 5 4 2 8 8 C 1.46496 * 119.99875 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.47283 * 180.02562 * 8 7 5 10 10 O 1.21296 * 119.99622 * 359.97438 * 9 8 7 11 11 N 1.34769 * 120.00461 * 180.02562 * 9 8 7 12 12 C 1.37100 * 120.00404 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99664 * 0.02562 * 12 11 9 14 14 C 1.38948 * 120.00074 * 179.97438 * 12 11 9 15 15 N 1.31402 * 120.00158 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99894 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47104 * 89.99771 * 16 14 12 18 18 H 1.48500 * 109.47256 * 210.00069 * 16 14 12 19 19 H 1.48506 * 109.46930 * 329.99910 * 16 14 12 20 20 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 21 21 C 1.38243 * 119.97334 * 119.72959 * 20 2 1 22 22 C 1.38205 * 120.01946 * 179.72574 * 21 20 2 23 23 C 1.38458 * 119.97681 * 0.56554 * 22 21 20 24 24 F 1.35095 * 120.02756 * 179.67909 * 23 22 21 25 25 C 1.38461 * 119.94484 * 359.70854 * 23 22 21 26 26 C 1.38193 * 119.97683 * 359.97438 * 25 23 22 27 27 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 28 28 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 29 29 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 32 32 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 33 33 H 1.09004 * 109.46930 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.47059 * 299.99666 * 4 2 1 35 35 H 0.96999 * 120.00043 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.47565 * 300.00629 * 8 7 5 37 37 H 1.09004 * 109.47374 * 60.00435 * 8 7 5 38 38 H 0.97003 * 120.00232 * 359.97438 * 11 9 8 39 39 H 0.97001 * 120.00548 * 179.97438 * 15 14 12 40 40 H 1.07997 * 119.99090 * 359.97438 * 21 20 2 41 41 H 1.08005 * 120.01097 * 180.24824 * 22 21 20 42 42 H 1.08008 * 120.00980 * 179.97438 * 25 23 22 43 43 H 1.08007 * 119.98852 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 8 0.8401 0.9749 -2.3684 7 7 1.8637 -0.4711 -3.7038 8 6 1.3750 0.2192 -4.8999 9 6 1.8774 -0.4911 -6.1304 10 8 2.5755 -1.4768 -6.0191 11 7 1.5519 -0.0307 -7.3545 12 6 2.0094 -0.6766 -8.4739 13 1 2.6303 -1.5547 -8.3748 14 6 1.6733 -0.2021 -9.7359 15 7 0.9166 0.8653 -9.8565 16 14 2.2961 -1.0827 -11.2612 17 1 1.3183 -2.1248 -11.6650 18 1 2.4606 -0.1036 -12.3655 19 1 3.6046 -1.7196 -10.9654 20 6 2.0323 -0.7105 1.2305 21 6 2.8224 -1.8377 1.1030 22 6 3.2883 -2.4867 2.2307 23 6 2.9538 -2.0144 3.4885 24 9 3.4033 -2.6518 4.5916 25 6 2.1577 -0.8886 3.6149 26 6 1.6984 -0.2374 2.4858 27 1 -0.3633 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7217 -1.2490 34 1 1.6767 -1.7490 -1.2492 35 1 2.4214 -1.2598 -3.7928 36 1 0.2850 0.2185 -4.9000 37 1 1.7376 1.2471 -4.8999 38 1 0.9939 0.7578 -7.4436 39 1 0.6823 1.1968 -10.7375 40 1 3.0790 -2.2089 0.1218 41 1 3.9089 -3.3650 2.1309 42 1 1.8957 -0.5195 4.5956 43 1 1.0777 0.6410 2.5841 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868315494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:16 Heat of formation + Delta-G solvation = -122.903980 kcal Electronic energy + Delta-G solvation = -26127.665975 eV Core-core repulsion = 22086.074470 eV Total energy + Delta-G solvation = -4041.591504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.85948 -41.54411 -40.43651 -39.70525 -36.77545 -36.13753 -35.17062 -33.36969 -32.27196 -30.71005 -30.02716 -28.25384 -28.06478 -26.25552 -24.06843 -23.67994 -21.62610 -21.34859 -20.35563 -19.95447 -18.86834 -18.25008 -17.31721 -17.24719 -16.91693 -16.82353 -16.56218 -16.34717 -16.04876 -15.76666 -15.66428 -15.39725 -14.93948 -14.82017 -14.45999 -14.23017 -14.01284 -13.84751 -13.78930 -13.54313 -13.35622 -13.16076 -12.91437 -12.64769 -12.45217 -12.26211 -12.25624 -12.12816 -11.97804 -11.81848 -11.56208 -11.45428 -10.54667 -10.51920 -10.11891 -10.01966 -10.01147 -9.46878 -8.50627 -6.00672 0.19558 0.32226 1.36798 1.43216 1.55553 1.69140 1.92982 2.09645 2.33843 2.65035 3.15790 3.16787 3.34040 3.54884 3.67249 3.98072 4.00565 4.05041 4.06440 4.24957 4.36609 4.39191 4.47370 4.48536 4.53717 4.67110 4.75554 4.91953 4.99303 5.01330 5.07734 5.14278 5.18673 5.22549 5.27058 5.36146 5.39265 5.53994 5.60753 5.69327 5.93110 5.97316 6.47808 6.62393 7.04416 7.29304 7.46347 7.95858 8.66171 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.030635 B = 0.002032 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.779351 B =13779.312725 C =14496.732967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.002 3.998 3 C -0.149 4.149 4 C -0.133 4.133 5 C 0.513 3.487 6 O -0.561 6.561 7 N -0.711 5.711 8 C 0.122 3.878 9 C 0.432 3.568 10 O -0.624 6.624 11 N -0.561 5.561 12 C -0.336 4.336 13 H 0.086 0.914 14 C -0.012 4.012 15 N -0.916 5.916 16 Si 0.996 3.004 17 H -0.271 1.271 18 H -0.273 1.273 19 H -0.270 1.270 20 C -0.078 4.078 21 C -0.099 4.099 22 C -0.153 4.153 23 C 0.068 3.932 24 F -0.153 7.153 25 C -0.153 4.153 26 C -0.087 4.087 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.413 0.587 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.398 0.602 39 H 0.279 0.721 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 -1.701 23.789 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.002 3.998 3 C -0.206 4.206 4 C -0.172 4.172 5 C 0.302 3.698 6 O -0.441 6.441 7 N -0.365 5.365 8 C -0.006 4.006 9 C 0.219 3.781 10 O -0.512 6.512 11 N -0.197 5.197 12 C -0.466 4.466 13 H 0.104 0.896 14 C -0.212 4.212 15 N -0.556 5.556 16 Si 0.819 3.181 17 H -0.196 1.196 18 H -0.197 1.197 19 H -0.194 1.194 20 C -0.078 4.078 21 C -0.116 4.116 22 C -0.172 4.172 23 C 0.049 3.951 24 F -0.131 7.131 25 C -0.172 4.172 26 C -0.105 4.105 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.251 0.749 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.171 0.829 41 H 0.165 0.835 42 H 0.165 0.835 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.097 -1.564 23.785 23.862 hybrid contribution 0.245 -0.361 -0.810 0.920 sum 1.342 -1.925 22.975 23.095 Atomic orbital electron populations 1.22089 0.93300 1.01886 1.03298 1.19102 0.96139 0.94954 0.89640 1.22089 1.00536 0.94647 1.03295 1.21947 1.03827 1.01165 0.90268 1.21089 0.79694 0.84407 0.84629 1.90574 1.39215 1.27655 1.86650 1.45821 1.53648 1.32591 1.04486 1.20727 1.00228 0.96435 0.83162 1.20524 0.85208 0.87044 0.85305 1.90473 1.43964 1.30080 1.86727 1.41868 1.45597 1.27700 1.04522 1.19724 1.30877 1.11504 0.84456 0.89592 1.26119 0.96417 0.96924 1.01769 1.69672 1.36306 1.23303 1.26341 0.84878 0.78663 0.77848 0.76669 1.19591 1.19735 1.19442 1.19954 0.97639 0.95686 0.94515 1.21311 0.96409 0.94557 0.99373 1.21365 1.02672 1.02366 0.90807 1.18018 0.99675 0.94488 0.82922 1.91466 1.87854 1.81379 1.52449 1.21319 0.99360 0.95405 1.01118 1.21020 0.98894 0.99918 0.90682 0.91805 0.91302 0.92878 0.92878 0.91302 0.91810 0.86573 0.86567 0.74937 0.88959 0.88950 0.76741 0.91110 0.82874 0.83502 0.83460 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 7.99 71.98 0.58 -2.23 16 2 C 0.00 0.04 0.60 -52.93 -0.03 0.01 16 3 C -0.15 -2.80 7.99 71.98 0.57 -2.23 16 4 C -0.13 -2.30 3.43 29.85 0.10 -2.19 16 5 C 0.51 13.13 7.24 87.66 0.63 13.77 16 6 O -0.56 -17.06 11.35 -3.03 -0.03 -17.10 16 7 N -0.71 -20.65 5.53 -466.80 -2.58 -23.23 16 8 C 0.12 4.17 6.15 85.63 0.53 4.69 16 9 C 0.43 19.21 7.85 87.66 0.69 19.90 16 10 O -0.62 -31.17 15.24 -3.08 -0.05 -31.22 16 11 N -0.56 -27.57 5.29 -306.99 -1.62 -29.19 16 12 C -0.34 -18.23 9.68 84.04 0.81 -17.42 16 13 H 0.09 4.91 7.16 -2.91 -0.02 4.88 16 14 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 15 N -0.92 -48.10 13.05 21.66 0.28 -47.82 16 16 Si 1.00 41.24 29.55 68.60 2.03 43.27 16 17 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 18 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 20 C -0.08 -1.19 4.76 -19.86 -0.09 -1.29 16 21 C -0.10 -1.40 8.97 22.26 0.20 -1.20 16 22 C -0.15 -2.33 10.03 22.31 0.22 -2.11 16 23 C 0.07 1.18 7.30 22.38 0.16 1.34 16 24 F -0.15 -2.98 17.27 44.97 0.78 -2.21 16 25 C -0.15 -2.29 10.03 22.31 0.22 -2.06 16 26 C -0.09 -1.25 8.71 22.26 0.19 -1.06 16 27 H 0.06 1.03 7.39 -2.39 -0.02 1.02 16 28 H 0.07 1.67 5.51 -2.39 -0.01 1.66 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.07 1.67 5.51 -2.39 -0.01 1.66 16 32 H 0.06 1.03 7.39 -2.39 -0.02 1.02 16 33 H 0.12 1.61 7.52 -2.38 -0.02 1.60 16 34 H 0.12 1.61 7.50 -2.39 -0.02 1.59 16 35 H 0.41 11.80 7.44 -92.71 -0.69 11.11 16 36 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 38 H 0.40 18.82 7.90 -92.71 -0.73 18.09 16 39 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 40 H 0.15 1.61 5.89 -2.91 -0.02 1.59 16 41 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.15 1.65 7.10 -2.91 -0.02 1.63 16 Total: -1.00 -64.08 358.11 3.71 -60.37 By element: Atomic # 1 Polarization: 39.70 SS G_CDS: -0.35 Total: 39.35 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 5.26 Total: 7.78 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -3.92 Total: -100.24 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -0.08 Total: -48.32 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.21 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -64.08 3.71 -60.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868315494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.539 kcal (2) G-P(sol) polarization free energy of solvation -64.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds