Wall clock time and date at job start Tue Mar 31 2020 14:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47031 * 2 1 4 4 C 1.52995 * 109.47023 * 119.99901 * 2 1 3 5 5 H 1.08996 * 109.55162 * 300.19233 * 4 2 1 6 6 C 1.53157 * 109.54814 * 180.02562 * 4 2 1 7 7 C 1.53033 * 109.41952 * 169.70543 * 6 4 2 8 8 C 1.52139 * 108.73611 * 51.21857 * 7 6 4 9 9 N 1.32754 * 124.09878 * 162.39565 * 8 7 6 10 10 C 1.29254 * 117.67567 * 180.02562 * 9 8 7 11 11 N 1.39001 * 124.95136 * 179.97438 * 10 9 8 12 12 C 1.34773 * 120.00282 * 0.02572 * 11 10 9 13 13 O 1.21279 * 120.00105 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99907 * 179.97438 * 12 11 10 15 15 C 1.53002 * 109.47030 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47033 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00096 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99746 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00166 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00022 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47490 * 89.99481 * 20 18 16 22 22 H 1.48496 * 109.47327 * 210.00165 * 20 18 16 23 23 H 1.48504 * 109.46799 * 329.99745 * 20 18 16 24 24 S 1.70888 * 110.08675 * 359.97438 * 10 9 8 25 25 C 1.34429 * 122.67900 * 342.43982 * 8 7 6 26 26 C 1.51035 * 125.20717 * 359.92984 * 25 8 7 27 27 H 1.09004 * 109.47170 * 300.00400 * 1 2 3 28 28 H 1.09008 * 109.47022 * 59.99792 * 1 2 3 29 29 H 1.08993 * 109.47148 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46940 * 240.00410 * 2 1 3 31 31 H 1.08999 * 109.47148 * 179.97438 * 3 2 1 32 32 H 1.09008 * 109.47387 * 299.99984 * 3 2 1 33 33 H 1.09004 * 109.47470 * 59.99784 * 3 2 1 34 34 H 1.08994 * 109.48028 * 49.72086 * 6 4 2 35 35 H 1.09003 * 109.48380 * 289.69140 * 6 4 2 36 36 H 1.08997 * 109.59255 * 291.43912 * 7 6 4 37 37 H 1.08999 * 109.58838 * 170.99241 * 7 6 4 38 38 H 0.96997 * 119.99810 * 180.02562 * 11 10 9 39 39 H 1.08996 * 109.47614 * 299.99988 * 14 12 11 40 40 H 1.09004 * 109.47101 * 60.00793 * 14 12 11 41 41 H 1.08996 * 109.47420 * 300.00175 * 15 14 12 42 42 H 1.09001 * 109.47304 * 60.00079 * 15 14 12 43 43 H 0.97004 * 119.99977 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.61833 * 103.67875 * 26 25 8 45 45 H 1.09001 * 109.61219 * 224.20263 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6745 -0.2104 2.1400 6 6 3.5715 -0.7217 1.2513 7 6 4.0783 -1.2087 2.6107 8 6 3.3888 -2.5224 2.9473 9 7 3.8236 -3.3774 3.8651 10 6 3.1402 -4.4588 4.0498 11 7 3.4567 -5.4539 4.9673 12 6 4.5485 -5.3286 5.7475 13 8 5.2546 -4.3475 5.6494 14 6 4.8912 -6.4072 6.7426 15 6 6.1675 -6.0216 7.4933 16 6 6.5106 -7.1005 8.4879 17 1 5.8811 -7.9736 8.5762 18 6 7.6276 -6.9724 9.2860 19 7 8.3938 -5.9089 9.1789 20 14 8.0525 -8.3093 10.5195 21 1 8.9340 -9.3156 9.8749 22 1 8.7556 -7.7065 11.6803 23 1 6.8056 -8.9687 10.9840 24 16 1.7909 -4.4867 3.0014 25 6 2.2656 -2.9312 2.3319 26 6 1.5404 -2.1698 1.2477 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.9356 0.2893 1.0686 35 1 3.9360 -1.3865 0.4681 36 1 3.8450 -0.4672 3.3748 37 1 5.1563 -1.3629 2.5650 38 1 2.8918 -6.2384 5.0460 39 1 4.0719 -6.5204 7.4525 40 1 5.0497 -7.3491 6.2174 41 1 6.9866 -5.9088 6.7832 42 1 6.0096 -5.0796 8.0184 43 1 9.1795 -5.8186 9.7407 44 1 1.7468 -2.6259 0.2795 45 1 0.4680 -2.1882 1.4425 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890595903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:22 Heat of formation + Delta-G solvation = -21.091342 kcal Electronic energy + Delta-G solvation = -24159.010807 eV Core-core repulsion = 20688.047406 eV Total energy + Delta-G solvation = -3470.963401 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52363 -39.39801 -37.80557 -34.93380 -33.52603 -33.34526 -31.14163 -31.01080 -28.40545 -27.49414 -26.16456 -24.41459 -23.53379 -22.76706 -21.24168 -20.41696 -20.02902 -18.62965 -18.11826 -16.74748 -16.59020 -15.66701 -15.54989 -15.16865 -14.91574 -14.72421 -14.46605 -14.22618 -14.02755 -13.70369 -13.38499 -13.29038 -12.79720 -12.65451 -12.49198 -12.24859 -12.17110 -12.04536 -11.93474 -11.45000 -11.25718 -11.23613 -10.95406 -10.83268 -10.64107 -10.61221 -10.37923 -10.25980 -10.01954 -9.85824 -9.63323 -9.15844 -9.13922 -8.87219 -8.35202 -7.96523 -5.98393 -4.03443 0.81804 1.02238 1.66543 2.77592 3.07927 3.32169 3.33748 3.38452 3.40861 4.25835 4.31024 4.44711 4.48442 4.50432 4.76280 4.96425 4.99690 5.11731 5.18308 5.27277 5.29518 5.34589 5.36586 5.42570 5.46584 5.52325 5.58130 5.62983 5.70037 5.77752 5.82338 5.94654 5.96936 6.03403 6.10141 6.10699 6.15305 6.19788 6.47956 6.75402 7.29151 7.70649 7.80096 8.02481 8.03256 8.33216 8.58419 9.04418 9.60294 11.12454 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032151 B = 0.002209 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.678643 B =12672.354363 C =13422.151782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.151 4.151 4 C -0.078 4.078 5 H 0.076 0.924 6 C -0.117 4.117 7 C -0.040 4.040 8 C 0.104 3.896 9 N -0.479 5.479 10 C 0.293 3.707 11 N -0.645 5.645 12 C 0.500 3.500 13 O -0.461 6.461 14 C -0.124 4.124 15 C 0.036 3.964 16 C -0.529 4.529 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.888 5.888 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 S 0.088 5.912 25 C -0.255 4.255 26 C -0.025 4.025 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.419 0.581 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.261 0.739 44 H 0.076 0.924 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.646 9.510 -20.614 29.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.098 4.098 5 H 0.095 0.905 6 C -0.154 4.154 7 C -0.080 4.080 8 C -0.028 4.028 9 N -0.200 5.200 10 C -0.077 4.077 11 N -0.298 5.298 12 C 0.286 3.714 13 O -0.328 6.328 14 C -0.164 4.164 15 C -0.001 4.001 16 C -0.567 4.567 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.722 3.278 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 S 0.341 5.659 25 C -0.377 4.377 26 C -0.065 4.065 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.256 0.744 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.228 9.585 -20.326 28.935 hybrid contribution 0.392 -0.588 0.706 0.999 sum -17.836 8.996 -19.619 27.999 Atomic orbital electron populations 1.21897 0.95254 1.01869 1.01745 1.21129 0.95713 0.96259 0.97788 1.21922 1.01398 0.95750 1.01723 1.21275 0.95582 0.94395 0.98567 0.90525 1.21736 0.94982 1.01913 0.96809 1.20377 1.00055 0.90480 0.97084 1.20765 0.92876 0.96882 0.92255 1.66119 1.31351 1.02272 1.20277 1.23521 0.95140 0.92816 0.96244 1.43812 1.29396 1.20410 1.36155 1.22106 0.78706 0.89633 0.80996 1.90793 1.46880 1.30414 1.64678 1.21939 1.03439 0.95345 0.95707 1.18938 0.89458 0.97182 0.94554 1.21175 1.09940 1.05377 1.20202 0.92485 1.25032 0.96312 0.95705 0.97350 1.69998 1.15462 1.27533 1.39659 0.86568 0.78505 0.81827 0.80904 1.20653 1.21203 1.19870 1.83632 1.27730 1.20120 1.34426 1.25566 1.03432 0.99417 1.09250 1.20114 0.98342 0.93410 0.94638 0.92622 0.92800 0.92466 0.91057 0.92111 0.92819 0.92604 0.90340 0.91469 0.89895 0.89545 0.74421 0.89671 0.89679 0.95642 0.95631 0.92878 0.90588 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.87 37.16 0.33 -0.50 16 2 C -0.09 -0.54 2.49 -90.62 -0.23 -0.77 16 3 C -0.15 -0.85 8.87 37.16 0.33 -0.52 16 4 C -0.08 -0.59 1.77 -90.42 -0.16 -0.75 16 5 H 0.08 0.64 8.11 -51.93 -0.42 0.21 16 6 C -0.12 -0.98 5.06 -26.63 -0.13 -1.11 16 7 C -0.04 -0.47 6.29 -27.15 -0.17 -0.64 16 8 C 0.10 1.52 6.77 -82.83 -0.56 0.96 16 9 N -0.48 -8.79 8.61 -10.54 -0.09 -8.88 16 10 C 0.29 4.68 8.01 -87.65 -0.70 3.97 16 11 N -0.64 -9.86 5.40 -13.16 -0.07 -9.93 16 12 C 0.50 9.91 7.79 -10.99 -0.09 9.82 16 13 O -0.46 -11.38 14.62 5.56 0.08 -11.30 16 14 C -0.12 -2.45 5.64 -27.88 -0.16 -2.61 16 15 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 16 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.40 13.29 55.43 0.74 -26.66 16 20 Si 0.89 21.61 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 S 0.09 1.02 23.20 -107.50 -2.49 -1.47 16 25 C -0.25 -3.07 6.38 -35.49 -0.23 -3.29 16 26 C -0.03 -0.21 4.90 -27.60 -0.14 -0.35 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 29 H 0.06 0.31 6.72 -51.93 -0.35 -0.04 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.33 6.22 -51.93 -0.32 0.01 16 32 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.54 5.95 -51.93 -0.31 0.23 16 35 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.42 4.52 8.82 -40.82 -0.36 4.16 16 39 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 45 H 0.08 0.57 7.10 -51.93 -0.37 0.20 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -35.60 372.33 -10.84 -46.44 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -7.16 Total: -1.86 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -2.43 Total: -8.53 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.57 Total: -45.47 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.60 -10.84 -46.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890595903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.350 kcal (2) G-P(sol) polarization free energy of solvation -35.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds