Wall clock time and date at job start Tue Mar 31 2020 14:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47031 * 2 1 4 4 C 1.52995 * 109.47023 * 119.99901 * 2 1 3 5 5 H 1.08996 * 109.55162 * 300.19233 * 4 2 1 6 6 C 1.53157 * 109.54814 * 180.02562 * 4 2 1 7 7 C 1.53033 * 109.41952 * 169.70543 * 6 4 2 8 8 C 1.52139 * 108.73611 * 51.21857 * 7 6 4 9 9 N 1.32754 * 124.09878 * 162.39565 * 8 7 6 10 10 C 1.29254 * 117.67567 * 180.02562 * 9 8 7 11 11 N 1.39001 * 124.95136 * 179.97438 * 10 9 8 12 12 C 1.34773 * 120.00282 * 0.02572 * 11 10 9 13 13 O 1.21279 * 120.00105 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99907 * 179.97438 * 12 11 10 15 15 C 1.53002 * 109.47030 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47033 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00096 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99746 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00166 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00022 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47490 * 89.99481 * 20 18 16 22 22 H 1.48496 * 109.47327 * 210.00165 * 20 18 16 23 23 H 1.48504 * 109.46799 * 329.99745 * 20 18 16 24 24 S 1.70888 * 110.08675 * 359.97438 * 10 9 8 25 25 C 1.34429 * 122.67900 * 342.43982 * 8 7 6 26 26 C 1.51035 * 125.20717 * 359.92984 * 25 8 7 27 27 H 1.09004 * 109.47170 * 300.00400 * 1 2 3 28 28 H 1.09008 * 109.47022 * 59.99792 * 1 2 3 29 29 H 1.08993 * 109.47148 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46940 * 240.00410 * 2 1 3 31 31 H 1.08999 * 109.47148 * 179.97438 * 3 2 1 32 32 H 1.09008 * 109.47387 * 299.99984 * 3 2 1 33 33 H 1.09004 * 109.47470 * 59.99784 * 3 2 1 34 34 H 1.08994 * 109.48028 * 49.72086 * 6 4 2 35 35 H 1.09003 * 109.48380 * 289.69140 * 6 4 2 36 36 H 1.08997 * 109.59255 * 291.43912 * 7 6 4 37 37 H 1.08999 * 109.58838 * 170.99241 * 7 6 4 38 38 H 0.96997 * 119.99810 * 180.02562 * 11 10 9 39 39 H 1.08996 * 109.47614 * 299.99988 * 14 12 11 40 40 H 1.09004 * 109.47101 * 60.00793 * 14 12 11 41 41 H 1.08996 * 109.47420 * 300.00175 * 15 14 12 42 42 H 1.09001 * 109.47304 * 60.00079 * 15 14 12 43 43 H 0.97004 * 119.99977 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.61833 * 103.67875 * 26 25 8 45 45 H 1.09001 * 109.61219 * 224.20263 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6745 -0.2104 2.1400 6 6 3.5715 -0.7217 1.2513 7 6 4.0783 -1.2087 2.6107 8 6 3.3888 -2.5224 2.9473 9 7 3.8236 -3.3774 3.8651 10 6 3.1402 -4.4588 4.0498 11 7 3.4567 -5.4539 4.9673 12 6 4.5485 -5.3286 5.7475 13 8 5.2546 -4.3475 5.6494 14 6 4.8912 -6.4072 6.7426 15 6 6.1675 -6.0216 7.4933 16 6 6.5106 -7.1005 8.4879 17 1 5.8811 -7.9736 8.5762 18 6 7.6276 -6.9724 9.2860 19 7 8.3938 -5.9089 9.1789 20 14 8.0525 -8.3093 10.5195 21 1 8.9340 -9.3156 9.8749 22 1 8.7556 -7.7065 11.6803 23 1 6.8056 -8.9687 10.9840 24 16 1.7909 -4.4867 3.0014 25 6 2.2656 -2.9312 2.3319 26 6 1.5404 -2.1698 1.2477 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.9356 0.2893 1.0686 35 1 3.9360 -1.3865 0.4681 36 1 3.8450 -0.4672 3.3748 37 1 5.1563 -1.3629 2.5650 38 1 2.8918 -6.2384 5.0460 39 1 4.0719 -6.5204 7.4525 40 1 5.0497 -7.3491 6.2174 41 1 6.9866 -5.9088 6.7832 42 1 6.0096 -5.0796 8.0184 43 1 9.1795 -5.8186 9.7407 44 1 1.7468 -2.6259 0.2795 45 1 0.4680 -2.1882 1.4425 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890595903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:21 Heat of formation + Delta-G solvation = -43.041253 kcal Electronic energy + Delta-G solvation = -24159.962627 eV Core-core repulsion = 20688.047406 eV Total energy + Delta-G solvation = -3471.915220 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.68810 -40.62593 -38.72523 -36.17068 -35.58319 -34.27120 -32.99548 -31.91004 -29.40810 -28.01611 -27.90395 -25.77082 -24.39523 -23.97498 -22.73070 -21.58296 -20.74122 -19.74657 -19.38281 -18.55446 -17.77007 -17.23144 -16.97394 -16.46879 -16.00097 -15.89105 -15.35913 -15.19366 -15.08774 -14.85744 -14.49675 -14.27501 -14.17822 -14.04671 -13.44212 -13.29221 -13.08636 -13.01363 -12.88354 -12.81785 -12.62236 -12.49092 -12.11176 -11.95836 -11.83730 -11.67940 -11.49573 -11.41346 -11.37783 -11.27758 -11.14511 -11.02216 -10.58276 -10.20319 -10.14779 -9.06336 -8.19284 -6.33800 -0.28580 -0.04876 0.62754 1.41847 1.44764 1.45948 1.55700 1.91740 2.00953 2.42131 3.13966 3.20265 3.65819 3.80642 3.84152 3.93122 4.15340 4.23047 4.35066 4.40555 4.49406 4.49625 4.51195 4.57797 4.67005 4.78761 4.84422 4.88824 4.96691 5.01248 5.03353 5.07637 5.14189 5.19525 5.21127 5.31068 5.38214 5.42959 5.48300 5.58102 5.58400 5.64037 5.82515 6.05268 6.13999 6.82895 6.87531 7.21388 7.36667 8.93508 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032151 B = 0.002209 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.678643 B =12672.354363 C =13422.151782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 C -0.152 4.152 4 C -0.073 4.073 5 H 0.069 0.931 6 C -0.108 4.108 7 C -0.041 4.041 8 C 0.064 3.936 9 N -0.531 5.531 10 C 0.244 3.756 11 N -0.627 5.627 12 C 0.505 3.495 13 O -0.525 6.525 14 C -0.111 4.111 15 C 0.041 3.959 16 C -0.541 4.541 17 H 0.081 0.919 18 C -0.010 4.010 19 N -0.939 5.939 20 Si 0.976 3.024 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.253 1.253 24 S 0.180 5.820 25 C -0.241 4.241 26 C -0.027 4.027 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.440 0.560 39 H 0.115 0.885 40 H 0.115 0.885 41 H -0.019 1.019 42 H -0.018 1.018 43 H 0.263 0.737 44 H 0.094 0.906 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.769 7.871 -22.119 32.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.102 4.102 3 C -0.209 4.209 4 C -0.093 4.093 5 H 0.088 0.912 6 C -0.145 4.145 7 C -0.081 4.081 8 C -0.067 4.067 9 N -0.253 5.253 10 C -0.124 4.124 11 N -0.281 5.281 12 C 0.292 3.708 13 O -0.396 6.396 14 C -0.151 4.151 15 C 0.004 3.996 16 C -0.579 4.579 17 H 0.099 0.901 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.800 3.200 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.177 1.177 24 S 0.434 5.566 25 C -0.363 4.363 26 C -0.067 4.067 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.282 0.718 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.000 1.000 42 H 0.000 1.000 43 H 0.071 0.929 44 H 0.112 0.888 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.431 7.903 -21.865 31.620 hybrid contribution 1.258 0.000 1.045 1.635 sum -20.174 7.903 -20.820 30.049 Atomic orbital electron populations 1.21902 0.94639 1.02272 1.01956 1.21079 0.96135 0.96156 0.96875 1.21933 1.01411 0.95632 1.01944 1.21239 0.94645 0.94099 0.99322 0.91233 1.21704 0.95795 1.02573 0.94458 1.20439 0.98875 0.89738 0.99046 1.21088 0.94684 0.97759 0.93128 1.66068 1.33689 1.03736 1.21833 1.23730 0.97664 0.92963 0.98045 1.43263 1.28323 1.21216 1.35342 1.21942 0.79198 0.88544 0.81142 1.90776 1.49399 1.32677 1.66775 1.21694 1.00855 0.96333 0.96186 1.18708 0.91639 0.95384 0.93908 1.21695 1.10215 1.06032 1.19988 0.90112 1.26184 0.96269 0.98369 0.99873 1.70191 1.16241 1.30302 1.41133 0.85281 0.78903 0.78245 0.77564 1.19717 1.21354 1.17671 1.83206 1.23638 1.18542 1.31197 1.26246 1.02102 0.99614 1.08306 1.20357 0.98921 0.93396 0.94005 0.92964 0.92123 0.91947 0.90373 0.92143 0.92076 0.92949 0.88810 0.91341 0.90432 0.91648 0.71835 0.86660 0.86652 1.00018 1.00006 0.92883 0.88771 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.87 71.98 0.64 -0.58 16 2 C -0.08 -0.78 2.49 -10.80 -0.03 -0.81 16 3 C -0.15 -1.40 8.87 71.98 0.64 -0.76 16 4 C -0.07 -0.96 1.77 -10.66 -0.02 -0.98 16 5 H 0.07 1.05 8.11 -2.39 -0.02 1.03 16 6 C -0.11 -1.72 5.06 30.66 0.16 -1.57 16 7 C -0.04 -1.02 6.29 30.32 0.19 -0.83 16 8 C 0.06 1.91 6.77 42.01 0.28 2.19 16 9 N -0.53 -20.33 8.61 -187.25 -1.61 -21.94 16 10 C 0.24 7.78 8.01 179.31 1.44 9.22 16 11 N -0.63 -18.99 5.40 -313.96 -1.70 -20.68 16 12 C 0.51 20.70 7.79 87.66 0.68 21.39 16 13 O -0.52 -27.83 14.62 -3.03 -0.04 -27.87 16 14 C -0.11 -4.39 5.64 29.85 0.17 -4.22 16 15 C 0.04 2.32 4.26 29.85 0.13 2.45 16 16 C -0.54 -30.74 9.11 25.60 0.23 -30.51 16 17 H 0.08 4.10 7.74 -2.91 -0.02 4.08 16 18 C -0.01 -0.56 5.46 84.66 0.46 -0.10 16 19 N -0.94 -60.34 13.29 21.45 0.28 -60.05 16 20 Si 0.98 44.46 29.54 68.60 2.03 46.48 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 24 S 0.18 3.76 23.20 -56.49 -1.31 2.45 16 25 C -0.24 -5.39 6.38 24.92 0.16 -5.23 16 26 C -0.03 -0.38 4.90 30.03 0.15 -0.23 16 27 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.06 0.44 6.72 -2.39 -0.02 0.43 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.56 6.22 -2.39 -0.01 0.54 16 32 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.09 1.20 5.95 -2.39 -0.01 1.19 16 35 H 0.07 1.09 8.10 -2.39 -0.02 1.07 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.44 8.67 8.82 -92.71 -0.82 7.85 16 39 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 40 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 41 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 42 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 43 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 44 H 0.09 1.08 8.11 -2.39 -0.02 1.06 16 45 H 0.09 1.04 7.10 -2.39 -0.02 1.02 16 Total: -1.00 -83.95 372.33 3.10 -80.85 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.18 Total: 11.33 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 5.28 Total: -10.56 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -3.02 Total: -102.68 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.04 Total: -27.87 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.31 Total: 2.45 kcal Total: -83.95 3.10 -80.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890595903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.807 kcal (2) G-P(sol) polarization free energy of solvation -83.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds