Wall clock time and date at job start Tue Mar 31 2020 14:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 H 1.09008 * 109.54771 * 60.19534 * 4 2 1 6 6 C 1.53151 * 109.55536 * 180.49120 * 4 2 1 7 7 C 1.53007 * 109.44078 * 190.17802 * 6 4 2 8 8 C 1.52139 * 108.74651 * 308.81754 * 7 6 4 9 9 N 1.32745 * 124.10202 * 197.56588 * 8 7 6 10 10 C 1.29252 * 117.68220 * 179.97438 * 9 8 7 11 11 N 1.39005 * 124.95426 * 180.02562 * 10 9 8 12 12 C 1.34772 * 120.00435 * 359.97438 * 11 10 9 13 13 O 1.21285 * 119.99833 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00470 * 180.02562 * 12 11 10 15 15 C 1.52991 * 109.47290 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.46845 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00243 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99901 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99984 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99917 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47378 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47130 * 120.00140 * 20 18 16 23 23 H 1.48508 * 109.46806 * 239.99629 * 20 18 16 24 24 S 1.70889 * 110.08452 * 0.02562 * 10 9 8 25 25 C 1.34439 * 122.67799 * 17.52193 * 8 7 6 26 26 C 1.51028 * 125.20849 * 0.04616 * 25 8 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.08998 * 109.47661 * 310.18015 * 6 4 2 35 35 H 1.08993 * 109.47622 * 70.20874 * 6 4 2 36 36 H 1.09001 * 109.62447 * 189.01460 * 7 6 4 37 37 H 1.09000 * 109.55149 * 68.57201 * 7 6 4 38 38 H 0.96999 * 119.99430 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.46901 * 300.00386 * 14 12 11 40 40 H 1.09003 * 109.46802 * 59.99554 * 14 12 11 41 41 H 1.08995 * 109.47298 * 299.99876 * 15 14 12 42 42 H 1.09003 * 109.47335 * 60.00158 * 15 14 12 43 43 H 0.96995 * 120.00336 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.61742 * 256.33346 * 26 25 8 45 45 H 1.08998 * 109.61883 * 135.80461 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6802 -0.2064 -2.1401 6 6 3.5715 -0.7331 -1.2449 7 6 4.0808 -1.2224 -2.6022 8 6 3.3827 -2.5304 -2.9438 9 7 3.8148 -3.3871 -3.8611 10 6 3.1241 -4.4631 -4.0504 11 7 3.4369 -5.4591 -4.9682 12 6 4.5329 -5.3410 -5.7436 13 8 5.2460 -4.3653 -5.6409 14 6 4.8718 -6.4205 -6.7390 15 6 6.1533 -6.0429 -7.4844 16 6 6.4924 -7.1228 -8.4793 17 1 5.8572 -7.9914 -8.5711 18 6 7.6138 -7.0019 -9.2725 19 7 8.3877 -5.9445 -9.1605 20 14 8.0337 -8.3402 -10.5063 21 1 7.0124 -9.4158 -10.4367 22 1 8.0535 -7.7634 -11.8746 23 1 9.3697 -8.9053 -10.1880 24 16 1.7702 -4.4824 -3.0078 25 6 2.2538 -2.9315 -2.3338 26 6 1.5301 -2.1666 -1.2512 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.9422 0.2750 -1.0594 35 1 3.9275 -1.4015 -0.4611 36 1 5.1575 -1.3848 -2.5524 37 1 3.8562 -0.4780 -3.3661 38 1 2.8664 -6.2392 -5.0505 39 1 5.0207 -7.3644 -6.2146 40 1 4.0545 -6.5263 -7.4525 41 1 6.0040 -5.0991 -8.0088 42 1 6.9707 -5.9368 -6.7712 43 1 9.1767 -5.8596 -9.7181 44 1 1.7292 -2.6261 -0.2830 45 1 0.4585 -2.1763 -1.4502 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890595904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:26 Heat of formation + Delta-G solvation = -21.190984 kcal Electronic energy + Delta-G solvation = -24159.175436 eV Core-core repulsion = 20688.207714 eV Total energy + Delta-G solvation = -3470.967722 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.52356 -39.39745 -37.80580 -34.93363 -33.52653 -33.34654 -31.14177 -31.01062 -28.40480 -27.49489 -26.16562 -24.41504 -23.53542 -22.76644 -21.24163 -20.41700 -20.02978 -18.63001 -18.11809 -16.74831 -16.59056 -15.66808 -15.55192 -15.17017 -14.91637 -14.72442 -14.46248 -14.22246 -14.02869 -13.70314 -13.38676 -13.29254 -12.79409 -12.65594 -12.49184 -12.25068 -12.17075 -12.04909 -11.93541 -11.45113 -11.25742 -11.23373 -10.97100 -10.83467 -10.63218 -10.60290 -10.37876 -10.25967 -10.02512 -9.85765 -9.63670 -9.14549 -9.13913 -8.87196 -8.35617 -7.96501 -5.98676 -4.03636 0.81763 1.02234 1.66547 2.77585 3.07897 3.31301 3.33698 3.38550 3.41645 4.25856 4.31018 4.44632 4.48384 4.50457 4.76308 4.96420 4.99679 5.11698 5.18192 5.27230 5.29537 5.34657 5.36382 5.42544 5.46543 5.52314 5.58022 5.62949 5.70066 5.77751 5.82313 5.94610 5.96940 6.03349 6.10139 6.10611 6.15242 6.19806 6.47939 6.75372 7.29149 7.70822 7.79973 8.02404 8.03195 8.33068 8.58391 9.04460 9.60159 11.12234 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032174 B = 0.002209 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.067916 B =12672.659038 C =13422.312312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.151 4.151 4 C -0.078 4.078 5 H 0.076 0.924 6 C -0.116 4.116 7 C -0.040 4.040 8 C 0.104 3.896 9 N -0.479 5.479 10 C 0.293 3.707 11 N -0.645 5.645 12 C 0.500 3.500 13 O -0.462 6.462 14 C -0.124 4.124 15 C 0.036 3.964 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.888 5.888 20 Si 0.894 3.106 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 S 0.088 5.912 25 C -0.255 4.255 26 C -0.025 4.025 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.419 0.581 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.261 0.739 44 H 0.076 0.924 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.676 9.605 20.562 29.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.098 4.098 5 H 0.095 0.905 6 C -0.154 4.154 7 C -0.080 4.080 8 C -0.028 4.028 9 N -0.200 5.200 10 C -0.077 4.077 11 N -0.298 5.298 12 C 0.286 3.714 13 O -0.328 6.328 14 C -0.164 4.164 15 C -0.002 4.002 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 S 0.341 5.659 25 C -0.377 4.377 26 C -0.065 4.065 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.256 0.744 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.258 9.672 20.280 28.951 hybrid contribution 0.395 -0.576 -0.713 0.998 sum -17.863 9.096 19.568 28.013 Atomic orbital electron populations 1.21899 0.95255 1.01874 1.01745 1.21132 0.95713 0.96260 0.97795 1.21916 1.01392 0.95753 1.01722 1.21285 0.95545 0.94415 0.98566 0.90510 1.21724 0.94970 1.01895 0.96829 1.20372 0.99966 0.90577 0.97081 1.20764 0.92848 0.96862 0.92300 1.66111 1.31419 1.02325 1.20163 1.23521 0.95070 0.92866 0.96264 1.43812 1.28972 1.20693 1.36295 1.22108 0.78756 0.89568 0.81014 1.90794 1.46691 1.30736 1.64550 1.21938 1.03479 0.95309 0.95694 1.18942 0.89398 0.97219 0.94610 1.21218 1.09512 1.05646 1.20249 0.92426 1.25038 0.96304 0.95735 0.97352 1.70008 1.15045 1.27879 1.39724 0.86514 0.78293 0.81871 0.81147 1.19726 1.20996 1.21000 1.83633 1.27300 1.20401 1.34578 1.25570 1.03260 0.99560 1.09280 1.20125 0.98338 0.93400 0.94657 0.92622 0.92800 0.92458 0.91056 0.92826 0.92123 0.92601 0.90353 0.91470 0.89539 0.89901 0.74421 0.89675 0.89676 0.95629 0.95630 0.92933 0.90580 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.86 37.16 0.33 -0.50 16 2 C -0.09 -0.54 2.49 -90.63 -0.23 -0.77 16 3 C -0.15 -0.84 8.88 37.15 0.33 -0.51 16 4 C -0.08 -0.59 1.78 -90.40 -0.16 -0.75 16 5 H 0.08 0.64 8.11 -51.92 -0.42 0.21 16 6 C -0.12 -0.97 5.07 -26.65 -0.14 -1.11 16 7 C -0.04 -0.47 6.29 -27.17 -0.17 -0.64 16 8 C 0.10 1.52 6.77 -82.83 -0.56 0.96 16 9 N -0.48 -8.79 8.61 -10.54 -0.09 -8.88 16 10 C 0.29 4.67 8.02 -87.65 -0.70 3.97 16 11 N -0.64 -9.86 5.40 -13.16 -0.07 -9.93 16 12 C 0.50 9.91 7.79 -10.99 -0.09 9.82 16 13 O -0.46 -11.38 14.62 5.55 0.08 -11.30 16 14 C -0.12 -2.45 5.64 -27.89 -0.16 -2.61 16 15 C 0.04 0.96 4.26 -27.89 -0.12 0.84 16 16 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.67 5.46 -17.81 -0.10 1.57 16 19 N -0.89 -27.40 13.29 55.43 0.74 -26.66 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 S 0.09 1.02 23.20 -107.50 -2.49 -1.47 16 25 C -0.25 -3.07 6.38 -35.49 -0.23 -3.29 16 26 C -0.03 -0.22 4.88 -27.58 -0.13 -0.35 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.31 6.70 -51.93 -0.35 -0.04 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.33 6.24 -51.93 -0.32 0.01 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.54 5.98 -51.93 -0.31 0.23 16 35 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.42 4.52 8.82 -40.82 -0.36 4.16 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 45 H 0.08 0.57 7.09 -51.93 -0.37 0.20 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -35.63 372.33 -10.84 -46.47 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -7.16 Total: -1.89 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -2.43 Total: -8.53 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.57 Total: -45.47 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.63 -10.84 -46.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890595904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.281 kcal (2) G-P(sol) polarization free energy of solvation -35.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds