Wall clock time and date at job start Tue Mar 31 2020 14:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 H 1.09008 * 109.54771 * 60.19534 * 4 2 1 6 6 C 1.53151 * 109.55536 * 180.49120 * 4 2 1 7 7 C 1.53007 * 109.44078 * 190.17802 * 6 4 2 8 8 C 1.52139 * 108.74651 * 308.81754 * 7 6 4 9 9 N 1.32745 * 124.10202 * 197.56588 * 8 7 6 10 10 C 1.29252 * 117.68220 * 179.97438 * 9 8 7 11 11 N 1.39005 * 124.95426 * 180.02562 * 10 9 8 12 12 C 1.34772 * 120.00435 * 359.97438 * 11 10 9 13 13 O 1.21285 * 119.99833 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00470 * 180.02562 * 12 11 10 15 15 C 1.52991 * 109.47290 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.46845 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00243 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99901 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99984 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99917 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47378 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47130 * 120.00140 * 20 18 16 23 23 H 1.48508 * 109.46806 * 239.99629 * 20 18 16 24 24 S 1.70889 * 110.08452 * 0.02562 * 10 9 8 25 25 C 1.34439 * 122.67799 * 17.52193 * 8 7 6 26 26 C 1.51028 * 125.20849 * 0.04616 * 25 8 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.08998 * 109.47661 * 310.18015 * 6 4 2 35 35 H 1.08993 * 109.47622 * 70.20874 * 6 4 2 36 36 H 1.09001 * 109.62447 * 189.01460 * 7 6 4 37 37 H 1.09000 * 109.55149 * 68.57201 * 7 6 4 38 38 H 0.96999 * 119.99430 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.46901 * 300.00386 * 14 12 11 40 40 H 1.09003 * 109.46802 * 59.99554 * 14 12 11 41 41 H 1.08995 * 109.47298 * 299.99876 * 15 14 12 42 42 H 1.09003 * 109.47335 * 60.00158 * 15 14 12 43 43 H 0.96995 * 120.00336 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.61742 * 256.33346 * 26 25 8 45 45 H 1.08998 * 109.61883 * 135.80461 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6802 -0.2064 -2.1401 6 6 3.5715 -0.7331 -1.2449 7 6 4.0808 -1.2224 -2.6022 8 6 3.3827 -2.5304 -2.9438 9 7 3.8148 -3.3871 -3.8611 10 6 3.1241 -4.4631 -4.0504 11 7 3.4369 -5.4591 -4.9682 12 6 4.5329 -5.3410 -5.7436 13 8 5.2460 -4.3653 -5.6409 14 6 4.8718 -6.4205 -6.7390 15 6 6.1533 -6.0429 -7.4844 16 6 6.4924 -7.1228 -8.4793 17 1 5.8572 -7.9914 -8.5711 18 6 7.6138 -7.0019 -9.2725 19 7 8.3877 -5.9445 -9.1605 20 14 8.0337 -8.3402 -10.5063 21 1 7.0124 -9.4158 -10.4367 22 1 8.0535 -7.7634 -11.8746 23 1 9.3697 -8.9053 -10.1880 24 16 1.7702 -4.4824 -3.0078 25 6 2.2538 -2.9315 -2.3338 26 6 1.5301 -2.1666 -1.2512 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.9422 0.2750 -1.0594 35 1 3.9275 -1.4015 -0.4611 36 1 5.1575 -1.3848 -2.5524 37 1 3.8562 -0.4780 -3.3661 38 1 2.8664 -6.2392 -5.0505 39 1 5.0207 -7.3644 -6.2146 40 1 4.0545 -6.5263 -7.4525 41 1 6.0040 -5.0991 -8.0088 42 1 6.9707 -5.9368 -6.7712 43 1 9.1767 -5.8596 -9.7181 44 1 1.7292 -2.6261 -0.2830 45 1 0.4585 -2.1763 -1.4502 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890595904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:25 Heat of formation + Delta-G solvation = -43.165942 kcal Electronic energy + Delta-G solvation = -24160.128341 eV Core-core repulsion = 20688.207714 eV Total energy + Delta-G solvation = -3471.920627 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68757 -40.62519 -38.72508 -36.17023 -35.58357 -34.27235 -32.99610 -31.90914 -29.40765 -28.01558 -27.90578 -25.77147 -24.39609 -23.97559 -22.73030 -21.58174 -20.74126 -19.74677 -19.38270 -18.55756 -17.76966 -17.23313 -16.97371 -16.46532 -16.00113 -15.89197 -15.35973 -15.19488 -15.08912 -14.85389 -14.49558 -14.27926 -14.18059 -14.04797 -13.43901 -13.28772 -13.08905 -13.01379 -12.88316 -12.84850 -12.62551 -12.45935 -12.11182 -11.96834 -11.83883 -11.67931 -11.49523 -11.41190 -11.37222 -11.26539 -11.14236 -11.02196 -10.59453 -10.20289 -10.14782 -9.06284 -8.19585 -6.33995 -0.28590 -0.04853 0.62787 1.41858 1.43392 1.45915 1.56747 1.91738 2.00978 2.41947 3.13775 3.20268 3.65893 3.80704 3.84175 3.93091 4.15414 4.23035 4.35095 4.40568 4.49437 4.49594 4.51210 4.57775 4.66960 4.78749 4.84429 4.88927 4.96691 5.01251 5.03369 5.07601 5.14141 5.19549 5.21092 5.31090 5.38254 5.42970 5.48428 5.58037 5.58377 5.64042 5.82517 6.05293 6.13886 6.82964 6.87573 7.21406 7.36497 8.93455 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032174 B = 0.002209 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.067916 B =12672.659038 C =13422.312312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 C -0.152 4.152 4 C -0.073 4.073 5 H 0.069 0.931 6 C -0.108 4.108 7 C -0.041 4.041 8 C 0.064 3.936 9 N -0.531 5.531 10 C 0.244 3.756 11 N -0.627 5.627 12 C 0.505 3.495 13 O -0.525 6.525 14 C -0.111 4.111 15 C 0.041 3.959 16 C -0.540 4.540 17 H 0.081 0.919 18 C -0.010 4.010 19 N -0.939 5.939 20 Si 0.976 3.024 21 H -0.250 1.250 22 H -0.282 1.282 23 H -0.282 1.282 24 S 0.180 5.820 25 C -0.241 4.241 26 C -0.027 4.027 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.440 0.560 39 H 0.115 0.885 40 H 0.115 0.885 41 H -0.018 1.018 42 H -0.018 1.018 43 H 0.262 0.738 44 H 0.094 0.906 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.818 7.987 22.060 32.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 C -0.209 4.209 4 C -0.093 4.093 5 H 0.088 0.912 6 C -0.145 4.145 7 C -0.081 4.081 8 C -0.067 4.067 9 N -0.253 5.253 10 C -0.124 4.124 11 N -0.281 5.281 12 C 0.292 3.708 13 O -0.396 6.396 14 C -0.151 4.151 15 C 0.003 3.997 16 C -0.578 4.578 17 H 0.099 0.901 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.800 3.200 21 H -0.173 1.173 22 H -0.207 1.207 23 H -0.208 1.208 24 S 0.434 5.566 25 C -0.363 4.363 26 C -0.067 4.067 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.282 0.718 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.000 1.000 42 H 0.000 1.000 43 H 0.071 0.929 44 H 0.112 0.888 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.480 8.011 21.811 31.643 hybrid contribution 1.267 0.008 -1.050 1.646 sum -20.213 8.020 20.761 30.065 Atomic orbital electron populations 1.21903 0.94637 1.02277 1.01958 1.21081 0.96137 0.96156 0.96880 1.21927 1.01405 0.95636 1.01942 1.21249 0.94609 0.94120 0.99322 0.91213 1.21692 0.95784 1.02547 0.94485 1.20434 0.98791 0.89837 0.99033 1.21088 0.94656 0.97737 0.93175 1.66060 1.33774 1.03781 1.21710 1.23730 0.97592 0.93022 0.98058 1.43263 1.27903 1.21488 1.35488 1.21944 0.79253 0.88483 0.81148 1.90777 1.49208 1.32999 1.66650 1.21692 1.00849 0.96321 0.96200 1.18711 0.91627 0.95396 0.93935 1.21731 1.09786 1.06278 1.20034 0.90096 1.26188 0.96262 0.98408 0.99868 1.70197 1.15835 1.30631 1.41234 0.85233 0.78381 0.78685 0.77683 1.17308 1.20745 1.20751 1.83207 1.23198 1.18820 1.31365 1.26249 1.01949 0.99741 1.08329 1.20369 0.98916 0.93379 0.94030 0.92958 0.92126 0.91938 0.90379 0.92086 0.92157 0.92942 0.88823 0.91340 0.91641 0.90440 0.71835 0.86652 0.86658 1.00001 1.00002 0.92882 0.88765 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.86 71.98 0.64 -0.58 16 2 C -0.08 -0.78 2.49 -10.80 -0.03 -0.81 16 3 C -0.15 -1.40 8.88 71.98 0.64 -0.76 16 4 C -0.07 -0.96 1.78 -10.65 -0.02 -0.98 16 5 H 0.07 1.05 8.11 -2.38 -0.02 1.03 16 6 C -0.11 -1.72 5.07 30.65 0.16 -1.56 16 7 C -0.04 -1.02 6.29 30.31 0.19 -0.83 16 8 C 0.06 1.91 6.77 42.01 0.28 2.19 16 9 N -0.53 -20.32 8.61 -187.25 -1.61 -21.94 16 10 C 0.24 7.78 8.02 179.31 1.44 9.22 16 11 N -0.63 -18.98 5.40 -313.95 -1.70 -20.68 16 12 C 0.51 20.70 7.79 87.66 0.68 21.38 16 13 O -0.53 -27.83 14.62 -3.04 -0.04 -27.87 16 14 C -0.11 -4.38 5.64 29.85 0.17 -4.22 16 15 C 0.04 2.30 4.26 29.85 0.13 2.43 16 16 C -0.54 -30.68 9.11 25.60 0.23 -30.45 16 17 H 0.08 4.12 7.74 -2.91 -0.02 4.10 16 18 C -0.01 -0.58 5.46 84.66 0.46 -0.12 16 19 N -0.94 -60.35 13.29 21.45 0.28 -60.06 16 20 Si 0.98 44.48 29.54 68.60 2.03 46.50 16 21 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 24 S 0.18 3.76 23.20 -56.49 -1.31 2.45 16 25 C -0.24 -5.38 6.38 24.92 0.16 -5.23 16 26 C -0.03 -0.38 4.88 30.04 0.15 -0.23 16 27 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.44 6.70 -2.38 -0.02 0.43 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.56 6.24 -2.39 -0.01 0.54 16 33 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.09 1.20 5.98 -2.39 -0.01 1.18 16 35 H 0.07 1.09 8.10 -2.39 -0.02 1.07 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.44 8.66 8.82 -92.71 -0.82 7.84 16 39 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 40 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 41 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 42 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 43 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 44 H 0.09 1.08 8.11 -2.38 -0.02 1.06 16 45 H 0.09 1.04 7.09 -2.39 -0.02 1.02 16 Total: -1.00 -83.99 372.33 3.10 -80.89 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.18 Total: 11.24 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 5.28 Total: -10.54 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -3.02 Total: -102.67 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.04 Total: -27.87 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.31 Total: 2.45 kcal Total: -83.99 3.10 -80.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890595904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.727 kcal (2) G-P(sol) polarization free energy of solvation -83.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds