Wall clock time and date at job start Tue Mar 31 2020 14:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35978 * 116.99839 * 2 1 4 4 C 1.38727 * 119.98484 * 180.02562 * 3 2 1 5 5 C 1.38088 * 120.01725 * 180.25736 * 4 3 2 6 6 C 1.38856 * 119.98253 * 359.49178 * 5 4 3 7 7 N 1.40098 * 120.01619 * 180.23734 * 6 5 4 8 8 C 1.34771 * 120.00100 * 135.03727 * 7 6 5 9 9 S 1.71200 * 120.00084 * 4.14543 * 8 7 6 10 10 N 1.34781 * 119.99903 * 184.14601 * 8 7 6 11 11 C 1.46501 * 119.99960 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47087 * 90.00086 * 11 10 8 13 13 H 1.08002 * 119.99841 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99971 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99821 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99905 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47111 * 90.00519 * 16 14 12 18 18 H 1.48503 * 109.46877 * 210.00007 * 16 14 12 19 19 H 1.48496 * 109.47184 * 330.00077 * 16 14 12 20 20 C 1.46499 * 119.99760 * 359.97438 * 10 8 7 21 21 C 1.53003 * 109.46886 * 90.00263 * 20 10 8 22 22 C 1.52993 * 109.47294 * 64.99887 * 21 20 10 23 23 C 1.53006 * 109.46613 * 184.99631 * 21 20 10 24 24 C 1.38849 * 119.96691 * 0.53025 * 6 5 4 25 25 C 1.38093 * 119.98478 * 359.72265 * 24 6 5 26 26 H 1.08998 * 109.46668 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47091 * 299.99593 * 1 2 3 28 28 H 1.09005 * 109.46645 * 59.99938 * 1 2 3 29 29 H 1.07998 * 119.98642 * 359.97438 * 4 3 2 30 30 H 1.07993 * 120.01201 * 179.74667 * 5 4 3 31 31 H 0.96998 * 119.99308 * 315.03011 * 7 6 5 32 32 H 1.08993 * 109.46888 * 209.99909 * 11 10 8 33 33 H 1.08994 * 109.47038 * 330.00019 * 11 10 8 34 34 H 0.97007 * 120.00103 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.46877 * 209.99921 * 20 10 8 36 36 H 1.09001 * 109.47439 * 329.99983 * 20 10 8 37 37 H 1.08997 * 109.47140 * 304.99626 * 21 20 10 38 38 H 1.09003 * 109.47346 * 180.02562 * 22 21 20 39 39 H 1.09000 * 109.47151 * 299.99883 * 22 21 20 40 40 H 1.09005 * 109.47544 * 59.99751 * 22 21 20 41 41 H 1.08999 * 109.46954 * 60.00317 * 23 21 20 42 42 H 1.09003 * 109.46529 * 179.97438 * 23 21 20 43 43 H 1.08997 * 109.47363 * 299.99858 * 23 21 20 44 44 H 1.07999 * 120.00949 * 179.70720 * 24 6 5 45 45 H 1.08004 * 119.98942 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4317 1.2839 -0.0005 5 6 4.0592 2.5139 0.0048 6 6 3.3033 3.6786 0.0001 7 7 3.9393 4.9269 0.0005 8 6 3.5125 5.9009 -0.8274 9 16 2.1281 5.6497 -1.8028 10 7 4.1756 7.0728 -0.8875 11 6 3.7120 8.1314 -1.7879 12 6 2.7292 9.0136 -1.0621 13 1 2.4751 8.8062 -0.0331 14 6 2.1546 10.0855 -1.7115 15 7 1.2974 10.8557 -1.0779 16 14 2.5949 10.4446 -3.4910 17 1 1.6605 9.7185 -4.3883 18 1 2.4885 11.9043 -3.7424 19 1 3.9854 9.9965 -3.7571 20 6 5.3599 7.2879 -0.0525 21 6 6.6086 6.8357 -0.8122 22 6 6.8105 7.7279 -2.0385 23 6 7.8296 6.9435 0.1035 24 6 1.9167 3.6055 0.0011 25 6 1.2905 2.3747 0.0010 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.0194 0.3778 -0.0005 30 1 5.1377 2.5700 0.0085 31 1 4.6867 5.0901 0.5968 32 1 4.5631 8.7283 -2.1154 33 1 3.2268 7.6839 -2.6553 34 1 0.8933 11.6100 -1.5347 35 1 5.4459 8.3471 0.1901 36 1 5.2655 6.7110 0.8675 37 1 6.4845 5.8011 -1.1321 38 1 7.6998 7.4055 -2.5801 39 1 5.9406 7.6512 -2.6909 40 1 6.9346 8.7626 -1.7187 41 1 7.6857 6.3078 0.9772 42 1 8.7191 6.6209 -0.4376 43 1 7.9537 7.9780 0.4234 44 1 1.3281 4.5110 0.0022 45 1 0.2120 2.3178 0.0022 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916121771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:14 Heat of formation + Delta-G solvation = 15.475357 kcal Electronic energy + Delta-G solvation = -25201.900994 eV Core-core repulsion = 21732.523245 eV Total energy + Delta-G solvation = -3469.377750 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.33223 -39.41211 -37.76990 -35.50132 -34.25844 -32.42987 -31.00530 -29.49366 -28.34760 -27.25103 -27.14083 -26.50432 -23.65660 -22.58632 -21.61713 -21.23140 -20.12201 -18.28255 -17.88903 -17.48129 -17.04811 -16.04077 -15.71734 -15.54396 -15.22669 -14.78908 -14.39700 -14.26435 -13.87522 -13.68142 -13.44386 -13.14628 -12.89833 -12.65269 -12.52146 -12.39971 -12.34790 -12.02528 -11.92651 -11.79743 -11.49072 -11.16670 -10.88771 -10.87309 -10.84877 -10.74483 -10.56999 -10.34729 -10.18491 -9.61648 -8.92503 -8.78493 -8.60323 -7.71892 -7.01700 -6.34766 -6.11574 -4.10793 1.29595 1.54694 2.10883 2.52637 3.15806 3.27749 3.30168 3.34024 3.39684 3.62054 3.90842 4.37651 4.65997 4.74531 4.88739 4.93653 4.96784 5.09524 5.12246 5.20455 5.25237 5.33257 5.42909 5.44417 5.48713 5.57082 5.62759 5.72574 5.76994 5.83688 5.93848 5.97646 6.10252 6.17906 6.24015 6.35593 6.50907 6.56295 6.65453 6.76193 6.88843 7.11708 7.34050 7.48382 7.50109 7.74954 8.39967 8.87726 9.46303 11.01477 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012928 B = 0.004074 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.401361 B = 6870.711697 C = 8475.725285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.322 6.322 3 C 0.123 3.877 4 C -0.154 4.154 5 C -0.090 4.090 6 C 0.101 3.899 7 N -0.647 5.647 8 C 0.558 3.442 9 S -0.634 6.634 10 N -0.527 5.527 11 C 0.205 3.795 12 C -0.522 4.522 13 H 0.074 0.926 14 C 0.081 3.919 15 N -0.893 5.893 16 Si 0.872 3.128 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.267 1.267 20 C 0.095 3.905 21 C -0.113 4.113 22 C -0.153 4.153 23 C -0.144 4.144 24 C -0.025 4.025 25 C -0.203 4.203 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.399 0.601 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.265 0.735 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.155 0.845 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.753 -16.012 4.804 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.235 6.235 3 C 0.078 3.922 4 C -0.174 4.174 5 C -0.111 4.111 6 C 0.008 3.992 7 N -0.277 5.277 8 C 0.200 3.800 9 S -0.498 6.498 10 N -0.230 5.230 11 C 0.086 3.914 12 C -0.561 4.561 13 H 0.092 0.908 14 C -0.122 4.122 15 N -0.531 5.531 16 Si 0.699 3.301 17 H -0.194 1.194 18 H -0.212 1.212 19 H -0.192 1.192 20 C -0.032 4.032 21 C -0.133 4.133 22 C -0.210 4.210 23 C -0.202 4.202 24 C -0.049 4.049 25 C -0.223 4.223 26 H 0.114 0.886 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.239 0.761 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.172 0.828 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.861 -15.978 4.062 18.716 hybrid contribution 0.921 0.761 -0.135 1.202 sum 9.782 -15.217 3.928 18.511 Atomic orbital electron populations 1.23032 0.78547 1.03527 1.01670 1.86033 1.21296 1.27223 1.88970 1.19040 0.92276 0.84037 0.96866 1.19978 0.91247 0.97564 1.08649 1.20630 0.99239 0.90464 1.00787 1.17279 0.91854 0.82858 1.07255 1.42224 1.35495 1.10783 1.39221 1.22246 0.90483 0.81879 0.85382 1.93106 1.18636 1.87351 1.50713 1.47427 1.24279 1.12132 1.39181 1.20431 0.96238 0.84175 0.90603 1.21000 1.24645 1.10166 1.00279 0.90822 1.24706 0.94283 0.95588 0.97654 1.69873 1.28781 1.17354 1.37133 0.86916 0.79593 0.77572 0.86039 1.19420 1.21155 1.19188 1.21976 0.84247 1.04247 0.92693 1.21566 0.94553 1.00361 0.96805 1.21969 1.02064 0.99620 0.97337 1.21785 0.97071 1.02312 0.99023 1.21494 0.93434 0.98866 0.91074 1.21069 1.00084 0.91510 1.09684 0.88588 0.92631 0.92460 0.85289 0.85624 0.76145 0.93974 0.91408 0.92466 0.87906 0.91364 0.91254 0.92848 0.91539 0.92064 0.92704 0.92283 0.92074 0.82759 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.90 10.50 -19.67 -0.21 -4.11 16 3 C 0.12 1.64 6.69 -39.23 -0.26 1.38 16 4 C -0.15 -1.90 9.98 -39.46 -0.39 -2.29 16 5 C -0.09 -1.11 9.96 -39.41 -0.39 -1.51 16 6 C 0.10 1.51 5.94 -83.62 -0.50 1.01 16 7 N -0.65 -9.67 5.20 -11.36 -0.06 -9.73 16 8 C 0.56 10.70 7.56 -86.92 -0.66 10.04 16 9 S -0.63 -14.90 24.22 -107.50 -2.60 -17.51 16 10 N -0.53 -9.85 2.28 -177.09 -0.40 -10.25 16 11 C 0.21 4.66 3.06 -5.19 -0.02 4.64 16 12 C -0.52 -14.23 9.94 -34.44 -0.34 -14.57 16 13 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 14 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 15 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 16 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 20 C 0.09 1.31 4.70 -4.04 -0.02 1.29 16 21 C -0.11 -1.29 3.13 -90.62 -0.28 -1.57 16 22 C -0.15 -1.96 8.18 37.15 0.30 -1.65 16 23 C -0.14 -1.25 9.19 37.16 0.34 -0.91 16 24 C -0.03 -0.41 7.87 -39.41 -0.31 -0.72 16 25 C -0.20 -2.86 9.03 -39.46 -0.36 -3.21 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 28 H 0.06 0.49 7.66 -51.93 -0.40 0.10 16 29 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.40 4.68 6.52 -40.82 -0.27 4.42 16 32 H 0.04 0.91 5.03 -51.93 -0.26 0.65 16 33 H 0.07 1.70 6.01 -51.93 -0.31 1.39 16 34 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.10 1.50 8.07 -51.93 -0.42 1.08 16 36 H 0.07 0.78 6.31 -51.93 -0.33 0.45 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.03 5.89 -51.93 -0.31 0.72 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.16 2.93 6.09 -44.12 -0.27 2.66 16 45 H 0.13 1.60 6.29 -52.48 -0.33 1.27 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -33.80 369.90 -10.27 -44.07 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.68 Total: 6.33 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.99 Total: -4.65 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.31 Total: -46.17 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.21 Total: -4.11 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Atomic # 16 Polarization: -14.90 SS G_CDS: -2.60 Total: -17.51 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.80 -10.27 -44.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916121771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.545 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds