Wall clock time and date at job start Tue Mar 31 2020 14:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35978 * 116.99839 * 2 1 4 4 C 1.38727 * 119.98484 * 180.02562 * 3 2 1 5 5 C 1.38088 * 120.01725 * 180.25736 * 4 3 2 6 6 C 1.38856 * 119.98253 * 359.49178 * 5 4 3 7 7 N 1.40098 * 120.01619 * 180.23734 * 6 5 4 8 8 C 1.34771 * 120.00100 * 135.03727 * 7 6 5 9 9 S 1.71200 * 120.00084 * 4.14543 * 8 7 6 10 10 N 1.34781 * 119.99903 * 184.14601 * 8 7 6 11 11 C 1.46501 * 119.99960 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47087 * 90.00086 * 11 10 8 13 13 H 1.08002 * 119.99841 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99971 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99821 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99905 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47111 * 90.00519 * 16 14 12 18 18 H 1.48503 * 109.46877 * 210.00007 * 16 14 12 19 19 H 1.48496 * 109.47184 * 330.00077 * 16 14 12 20 20 C 1.46499 * 119.99760 * 359.97438 * 10 8 7 21 21 C 1.53003 * 109.46886 * 90.00263 * 20 10 8 22 22 C 1.52993 * 109.47294 * 64.99887 * 21 20 10 23 23 C 1.53006 * 109.46613 * 184.99631 * 21 20 10 24 24 C 1.38849 * 119.96691 * 0.53025 * 6 5 4 25 25 C 1.38093 * 119.98478 * 359.72265 * 24 6 5 26 26 H 1.08998 * 109.46668 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47091 * 299.99593 * 1 2 3 28 28 H 1.09005 * 109.46645 * 59.99938 * 1 2 3 29 29 H 1.07998 * 119.98642 * 359.97438 * 4 3 2 30 30 H 1.07993 * 120.01201 * 179.74667 * 5 4 3 31 31 H 0.96998 * 119.99308 * 315.03011 * 7 6 5 32 32 H 1.08993 * 109.46888 * 209.99909 * 11 10 8 33 33 H 1.08994 * 109.47038 * 330.00019 * 11 10 8 34 34 H 0.97007 * 120.00103 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.46877 * 209.99921 * 20 10 8 36 36 H 1.09001 * 109.47439 * 329.99983 * 20 10 8 37 37 H 1.08997 * 109.47140 * 304.99626 * 21 20 10 38 38 H 1.09003 * 109.47346 * 180.02562 * 22 21 20 39 39 H 1.09000 * 109.47151 * 299.99883 * 22 21 20 40 40 H 1.09005 * 109.47544 * 59.99751 * 22 21 20 41 41 H 1.08999 * 109.46954 * 60.00317 * 23 21 20 42 42 H 1.09003 * 109.46529 * 179.97438 * 23 21 20 43 43 H 1.08997 * 109.47363 * 299.99858 * 23 21 20 44 44 H 1.07999 * 120.00949 * 179.70720 * 24 6 5 45 45 H 1.08004 * 119.98942 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4317 1.2839 -0.0005 5 6 4.0592 2.5139 0.0048 6 6 3.3033 3.6786 0.0001 7 7 3.9393 4.9269 0.0005 8 6 3.5125 5.9009 -0.8274 9 16 2.1281 5.6497 -1.8028 10 7 4.1756 7.0728 -0.8875 11 6 3.7120 8.1314 -1.7879 12 6 2.7292 9.0136 -1.0621 13 1 2.4751 8.8062 -0.0331 14 6 2.1546 10.0855 -1.7115 15 7 1.2974 10.8557 -1.0779 16 14 2.5949 10.4446 -3.4910 17 1 1.6605 9.7185 -4.3883 18 1 2.4885 11.9043 -3.7424 19 1 3.9854 9.9965 -3.7571 20 6 5.3599 7.2879 -0.0525 21 6 6.6086 6.8357 -0.8122 22 6 6.8105 7.7279 -2.0385 23 6 7.8296 6.9435 0.1035 24 6 1.9167 3.6055 0.0011 25 6 1.2905 2.3747 0.0010 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.0194 0.3778 -0.0005 30 1 5.1377 2.5700 0.0085 31 1 4.6867 5.0901 0.5968 32 1 4.5631 8.7283 -2.1154 33 1 3.2268 7.6839 -2.6553 34 1 0.8933 11.6100 -1.5347 35 1 5.4459 8.3471 0.1901 36 1 5.2655 6.7110 0.8675 37 1 6.4845 5.8011 -1.1321 38 1 7.6998 7.4055 -2.5801 39 1 5.9406 7.6512 -2.6909 40 1 6.9346 8.7626 -1.7187 41 1 7.6857 6.3078 0.9772 42 1 8.7191 6.6209 -0.4376 43 1 7.9537 7.9780 0.4234 44 1 1.3281 4.5110 0.0022 45 1 0.2120 2.3178 0.0022 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916121771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:13 Heat of formation + Delta-G solvation = -4.661076 kcal Electronic energy + Delta-G solvation = -25202.774176 eV Core-core repulsion = 21732.523245 eV Total energy + Delta-G solvation = -3470.250931 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51633 -40.61556 -38.88234 -36.57811 -35.69792 -34.38354 -32.07520 -30.96687 -29.69971 -28.23361 -28.07532 -27.69369 -25.25054 -23.85669 -22.81620 -22.60632 -21.20205 -19.48700 -19.20143 -19.01819 -18.76347 -17.10736 -17.00729 -16.58633 -16.49553 -16.32553 -15.77327 -15.39230 -15.13896 -14.89763 -14.57635 -14.44418 -14.24666 -13.95455 -13.78007 -13.63768 -13.51570 -13.16630 -13.01233 -12.85892 -12.68958 -12.60413 -12.37191 -12.23045 -11.98929 -11.84292 -11.80244 -11.78595 -11.71933 -11.63024 -10.79689 -10.20874 -10.00377 -8.95243 -8.75361 -8.31560 -8.08009 -6.34580 0.05011 0.45753 0.72869 0.99344 1.31561 1.40490 1.42938 1.66226 2.29428 2.32230 2.43248 2.81505 3.05310 3.63680 3.77530 3.91381 3.97125 4.02697 4.27427 4.29840 4.38827 4.41699 4.42828 4.45568 4.55266 4.61980 4.72133 4.75415 4.82257 4.84903 4.88804 4.95408 5.02182 5.13137 5.17908 5.27838 5.33307 5.36383 5.42646 5.44853 5.46686 5.64215 5.71820 5.93501 6.23389 6.36965 6.48642 6.63232 7.26108 8.85351 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012928 B = 0.004074 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.401361 B = 6870.711697 C = 8475.725285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.327 6.327 3 C 0.124 3.876 4 C -0.152 4.152 5 C -0.071 4.071 6 C 0.075 3.925 7 N -0.618 5.618 8 C 0.577 3.423 9 S -0.733 6.733 10 N -0.528 5.528 11 C 0.222 3.778 12 C -0.517 4.517 13 H 0.029 0.971 14 C 0.022 3.978 15 N -0.943 5.943 16 Si 0.935 3.065 17 H -0.281 1.281 18 H -0.277 1.277 19 H -0.235 1.235 20 C 0.086 3.914 21 C -0.102 4.102 22 C -0.156 4.156 23 C -0.138 4.138 24 C -0.046 4.046 25 C -0.211 4.211 26 H 0.124 0.876 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.158 0.842 30 H 0.163 0.837 31 H 0.420 0.580 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.267 0.733 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.117 0.883 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.409 -18.254 5.077 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.241 6.241 3 C 0.078 3.922 4 C -0.171 4.171 5 C -0.092 4.092 6 C -0.018 4.018 7 N -0.248 5.248 8 C 0.215 3.785 9 S -0.600 6.600 10 N -0.230 5.230 11 C 0.100 3.900 12 C -0.556 4.556 13 H 0.048 0.952 14 C -0.176 4.176 15 N -0.583 5.583 16 Si 0.759 3.241 17 H -0.207 1.207 18 H -0.202 1.202 19 H -0.158 1.158 20 C -0.038 4.038 21 C -0.122 4.122 22 C -0.214 4.214 23 C -0.196 4.196 24 C -0.069 4.069 25 C -0.231 4.231 26 H 0.142 0.858 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.176 0.824 30 H 0.181 0.819 31 H 0.262 0.738 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.135 0.865 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.581 -18.275 4.402 22.620 hybrid contribution -0.244 1.297 -0.054 1.321 sum 12.338 -16.978 4.348 21.433 Atomic orbital electron populations 1.23303 0.76882 1.05500 1.01873 1.86034 1.23041 1.26416 1.88600 1.19232 0.92992 0.84036 0.95958 1.20400 0.91016 0.98642 1.07064 1.20934 1.00817 0.89058 0.98380 1.17497 0.91630 0.83409 1.09247 1.42016 1.35177 1.09937 1.37649 1.21675 0.88964 0.82782 0.85112 1.93285 1.23255 1.88898 1.54591 1.47320 1.25462 1.11039 1.39204 1.19997 0.95642 0.84391 0.90007 1.21178 1.25187 1.10657 0.98614 0.95244 1.25590 0.94239 0.95561 1.02249 1.70022 1.30651 1.18384 1.39249 0.85902 0.80705 0.77575 0.79943 1.20706 1.20226 1.15791 1.22384 0.83338 1.04668 0.93401 1.21510 0.94258 0.99960 0.96506 1.21994 1.01594 1.00123 0.97652 1.21756 0.95766 1.02950 0.99107 1.21254 0.94255 0.98296 0.93100 1.21128 1.00722 0.91357 1.09939 0.85771 0.91969 0.92776 0.82391 0.81945 0.73752 0.91783 0.93527 0.92397 0.88635 0.88568 0.90882 0.90816 0.94573 0.92147 0.90838 0.90953 0.92039 0.86487 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.33 -7.27 10.50 -93.30 -0.98 -8.25 16 3 C 0.12 3.09 6.69 22.50 0.15 3.24 16 4 C -0.15 -3.23 9.98 22.35 0.22 -3.01 16 5 C -0.07 -1.52 9.96 22.38 0.22 -1.30 16 6 C 0.08 2.17 5.94 38.11 0.23 2.39 16 7 N -0.62 -17.65 5.20 -189.87 -0.99 -18.64 16 8 C 0.58 22.32 7.56 179.05 1.35 23.67 16 9 S -0.73 -36.38 24.22 -56.49 -1.37 -37.75 16 10 N -0.53 -19.63 2.28 -714.18 -1.63 -21.26 16 11 C 0.22 10.16 3.06 85.63 0.26 10.43 16 12 C -0.52 -29.28 9.94 25.60 0.25 -29.03 16 13 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 14 C 0.02 1.28 5.47 84.65 0.46 1.75 16 15 N -0.94 -59.23 13.96 21.45 0.30 -58.93 16 16 Si 0.94 44.33 27.47 68.60 1.88 46.22 16 17 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.23 -9.80 6.54 99.48 0.65 -9.15 16 20 C 0.09 2.21 4.70 86.38 0.41 2.62 16 21 C -0.10 -2.01 3.13 -10.79 -0.03 -2.04 16 22 C -0.16 -3.61 8.18 71.98 0.59 -3.02 16 23 C -0.14 -1.78 9.19 71.98 0.66 -1.12 16 24 C -0.05 -1.54 7.87 22.38 0.18 -1.37 16 25 C -0.21 -6.01 9.03 22.35 0.20 -5.81 16 26 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 28 H 0.05 0.90 7.66 -2.38 -0.02 0.88 16 29 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.42 8.56 6.52 -92.71 -0.60 7.95 16 32 H 0.06 2.69 5.03 -2.39 -0.01 2.68 16 33 H 0.05 2.39 6.01 -2.39 -0.01 2.38 16 34 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 35 H 0.10 2.65 8.07 -2.39 -0.02 2.63 16 36 H 0.10 1.91 6.31 -2.39 -0.02 1.89 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.04 1.05 5.89 -2.39 -0.01 1.03 16 40 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.12 4.84 6.09 -8.23 -0.05 4.79 16 45 H 0.14 3.49 6.29 -2.91 -0.02 3.47 16 Total: -1.00 -80.08 369.90 3.79 -76.28 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.30 Total: 23.51 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 6.27 Total: -1.19 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -2.32 Total: -98.82 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.98 Total: -8.25 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.22 kcal Atomic # 16 Polarization: -36.38 SS G_CDS: -1.37 Total: -37.75 kcal Total: -80.08 3.79 -76.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916121771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.623 kcal (2) G-P(sol) polarization free energy of solvation -80.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds