Wall clock time and date at job start Tue Mar 31 2020 14:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46791 * 2 1 4 4 C 1.52994 * 109.46897 * 119.99456 * 2 1 3 5 5 N 1.46508 * 109.47219 * 65.00551 * 4 2 1 6 6 C 1.34772 * 120.00104 * 179.97438 * 5 4 2 7 7 S 1.71198 * 120.00336 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99680 * 179.97438 * 6 5 4 9 9 C 1.39884 * 119.99814 * 185.53673 * 8 6 5 10 10 C 1.38936 * 120.04664 * 221.89329 * 9 8 6 11 11 C 1.38113 * 120.04280 * 180.02562 * 10 9 8 12 12 C 1.38213 * 120.12596 * 359.67496 * 11 10 9 13 13 C 1.38761 * 120.08610 * 0.60061 * 12 11 10 14 14 O 1.35901 * 120.02426 * 179.69857 * 13 12 11 15 15 C 1.42898 * 116.99922 * 359.72375 * 14 13 12 16 16 C 1.52993 * 109.47295 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47374 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99785 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00027 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00211 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99810 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47383 * 59.99863 * 21 19 17 23 23 H 1.48500 * 109.46933 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46853 * 299.99953 * 21 19 17 25 25 C 1.38629 * 119.95937 * 359.42175 * 13 12 11 26 26 H 1.08997 * 109.47182 * 300.00504 * 1 2 3 27 27 H 1.09000 * 109.46654 * 60.00256 * 1 2 3 28 28 H 1.09004 * 109.46745 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47182 * 239.99496 * 2 1 3 30 30 H 1.09010 * 109.47048 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47312 * 299.99341 * 3 2 1 32 32 H 1.08997 * 109.47669 * 59.99794 * 3 2 1 33 33 H 1.09002 * 109.47728 * 305.00160 * 4 2 1 34 34 H 1.09004 * 109.47174 * 184.99567 * 4 2 1 35 35 H 0.97005 * 119.99483 * 359.97438 * 5 4 2 36 36 H 0.96995 * 119.99710 * 5.53990 * 8 6 5 37 37 H 1.08001 * 119.97877 * 0.02562 * 10 9 8 38 38 H 1.08006 * 119.94097 * 179.97438 * 11 10 9 39 39 H 1.08001 * 119.96133 * 180.29719 * 12 11 10 40 40 H 1.09002 * 109.47081 * 300.00303 * 15 14 13 41 41 H 1.09003 * 109.46910 * 60.00196 * 15 14 13 42 42 H 1.09002 * 109.47083 * 300.00032 * 16 15 14 43 43 H 1.08992 * 109.47492 * 59.99754 * 16 15 14 44 44 H 0.96997 * 119.99748 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.06614 * 180.25263 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6525 -2.1328 1.1907 6 6 1.9965 -2.9681 2.1908 7 16 2.8868 -2.3798 3.5296 8 7 1.6395 -4.2667 2.1371 9 6 1.8941 -5.1076 3.2255 10 6 2.3703 -6.3954 3.0132 11 6 2.6212 -7.2259 4.0879 12 6 2.4059 -6.7763 5.3770 13 6 1.9250 -5.4931 5.5950 14 8 1.7079 -5.0545 6.8628 15 6 1.9906 -5.9697 7.9232 16 6 1.6869 -5.3034 9.2666 17 6 1.9857 -6.2683 10.3849 18 1 2.3548 -7.2580 10.1600 19 6 1.7878 -5.8877 11.6952 20 7 1.3387 -4.6823 11.9692 21 14 2.1588 -7.0836 13.0814 22 1 3.5920 -7.4690 13.0324 23 1 1.8639 -6.4369 14.3853 24 1 1.3147 -8.2958 12.9285 25 6 1.6715 -4.6567 4.5189 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6054 -0.2616 2.1370 34 1 3.1263 -0.6443 1.2952 35 1 1.1483 -2.4662 0.4320 36 1 1.2061 -4.6180 1.3437 37 1 2.5444 -6.7474 2.0071 38 1 2.9909 -8.2268 3.9209 39 1 2.6075 -7.4263 6.2157 40 1 1.3704 -6.8590 7.8107 41 1 3.0425 -6.2534 7.8875 42 1 2.3068 -4.4139 9.3793 43 1 0.6351 -5.0200 9.3021 44 1 1.1999 -4.4144 12.8910 45 1 1.3011 -3.6562 4.6868 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917582786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:15 Heat of formation + Delta-G solvation = -7.765686 kcal Electronic energy + Delta-G solvation = -23671.590409 eV Core-core repulsion = 20201.204852 eV Total energy + Delta-G solvation = -3470.385557 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.33328 -39.18582 -37.80525 -36.16286 -34.01682 -33.28016 -30.83455 -29.63856 -29.10130 -27.76191 -26.68746 -24.96922 -24.26680 -22.47848 -22.11892 -21.06774 -20.45402 -18.84587 -18.40299 -16.97205 -16.28000 -15.94690 -15.92397 -15.67822 -15.27953 -15.18010 -15.11302 -14.59600 -14.34398 -14.11286 -13.66176 -13.27570 -13.08676 -12.72724 -12.67055 -12.35193 -12.25709 -11.76781 -11.68966 -11.60675 -11.39927 -11.34292 -11.27033 -11.11594 -10.82344 -10.76114 -10.45488 -9.99930 -9.74916 -9.57979 -9.23476 -8.63145 -8.37586 -7.95057 -7.74454 -7.03478 -6.03050 -4.07613 0.86281 1.63837 1.70309 1.85497 2.34203 3.15494 3.33490 3.37642 3.39603 3.96461 3.98232 4.12659 4.29613 4.42721 4.47266 4.91226 5.01722 5.09950 5.14919 5.16493 5.24947 5.25810 5.32945 5.34375 5.40015 5.43847 5.55623 5.63118 5.68831 5.70837 5.77026 5.93336 6.10759 6.14056 6.25685 6.46095 6.48343 6.56635 6.66771 6.81666 6.95593 7.11477 7.59596 7.74194 7.89138 8.16850 8.31823 8.97928 9.56085 11.08486 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018092 B = 0.002281 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.300602 B =12273.473011 C =13445.731967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.145 4.145 4 C 0.126 3.874 5 N -0.682 5.682 6 C 0.548 3.452 7 S -0.597 6.597 8 N -0.631 5.631 9 C 0.157 3.843 10 C -0.175 4.175 11 C -0.075 4.075 12 C -0.207 4.207 13 C 0.156 3.844 14 O -0.309 6.309 15 C 0.065 3.935 16 C 0.025 3.975 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.060 3.940 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.113 4.113 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.395 0.605 36 H 0.404 0.596 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.029 0.971 43 H 0.027 0.973 44 H 0.263 0.737 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 4.450 -30.569 30.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.129 4.129 3 C -0.203 4.203 4 C 0.003 3.997 5 N -0.312 5.312 6 C 0.191 3.809 7 S -0.469 6.469 8 N -0.256 5.256 9 C 0.064 3.936 10 C -0.196 4.196 11 C -0.094 4.094 12 C -0.226 4.226 13 C 0.107 3.893 14 O -0.222 6.222 15 C -0.009 4.009 16 C -0.012 4.012 17 C -0.564 4.564 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.135 4.135 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.231 0.769 36 H 0.241 0.759 37 H 0.136 0.864 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.312 5.321 -29.398 29.904 hybrid contribution -0.557 -1.484 -0.667 1.720 sum -1.869 3.837 -30.064 30.366 Atomic orbital electron populations 1.21916 0.94569 1.01715 1.02719 1.21414 0.96531 0.97501 0.97413 1.21745 1.01577 0.94318 1.02621 1.21904 1.01954 0.76663 0.99159 1.45046 1.54894 1.10383 1.20846 1.22504 0.84520 0.83088 0.90779 1.93825 1.48194 1.80169 1.24719 1.42137 1.58623 1.06401 1.18454 1.16890 1.01661 0.89621 0.85404 1.20567 1.05978 0.93736 0.99301 1.20588 0.98355 0.99032 0.91393 1.21450 1.06377 0.96403 0.98414 1.18839 0.93261 0.91445 0.85763 1.86205 1.80925 1.43384 1.11683 1.23332 0.99115 0.92003 0.86439 1.19117 0.98447 0.96838 0.86817 1.20938 1.45224 0.99567 0.90664 0.92428 1.24993 0.95020 0.95357 0.98871 1.69974 1.44930 1.18238 1.19572 0.86555 0.78875 0.80934 0.81030 1.20101 1.21165 1.20153 1.20420 1.03419 1.00820 0.88877 0.91852 0.92122 0.93057 0.90659 0.91987 0.91997 0.91833 0.89120 0.89331 0.76870 0.75862 0.86366 0.85652 0.84967 0.93179 0.93060 0.95272 0.95419 0.92696 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.07 37.16 0.34 -0.29 16 2 C -0.11 -0.47 2.96 -90.62 -0.27 -0.74 16 3 C -0.14 -0.62 9.19 37.16 0.34 -0.28 16 4 C 0.13 0.88 4.52 -4.04 -0.02 0.87 16 5 N -0.68 -4.73 5.29 -62.03 -0.33 -5.06 16 6 C 0.55 6.08 7.74 -86.92 -0.67 5.41 16 7 S -0.60 -10.15 25.06 -107.50 -2.69 -12.85 16 8 N -0.63 -6.07 5.33 -11.42 -0.06 -6.13 16 9 C 0.16 2.07 5.91 -83.73 -0.49 1.58 16 10 C -0.17 -2.05 9.97 -39.37 -0.39 -2.44 16 11 C -0.07 -0.95 10.03 -39.64 -0.40 -1.35 16 12 C -0.21 -3.28 9.04 -39.40 -0.36 -3.64 16 13 C 0.16 2.88 6.68 -39.24 -0.26 2.62 16 14 O -0.31 -6.79 10.13 -19.43 -0.20 -6.99 16 15 C 0.07 1.45 4.68 37.15 0.17 1.63 16 16 C 0.02 0.68 5.34 -27.89 -0.15 0.53 16 17 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 21 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.11 -1.91 7.79 -39.24 -0.31 -2.22 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.05 0.19 7.18 -51.93 -0.37 -0.19 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.80 7.99 -51.93 -0.42 0.38 16 34 H 0.09 0.74 7.99 -51.93 -0.41 0.32 16 35 H 0.39 1.45 7.67 -40.82 -0.31 1.14 16 36 H 0.40 2.20 8.84 -40.82 -0.36 1.84 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 39 H 0.13 2.04 6.29 -52.49 -0.33 1.71 16 40 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 41 H 0.05 1.09 7.65 -51.93 -0.40 0.70 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.15 2.72 6.27 -49.92 -0.31 2.40 16 LS Contribution 382.30 15.07 5.76 5.76 Total: -1.00 -35.26 382.30 -11.76 -47.02 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.08 Total: -0.08 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -2.88 Total: -11.99 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.35 Total: -37.53 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.20 Total: -6.99 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -10.15 SS G_CDS: -2.69 Total: -12.85 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.26 -11.76 -47.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917582786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.256 kcal (2) G-P(sol) polarization free energy of solvation -35.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds