Wall clock time and date at job start Tue Mar 31 2020 14:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46791 * 2 1 4 4 C 1.52994 * 109.46897 * 119.99456 * 2 1 3 5 5 N 1.46508 * 109.47219 * 65.00551 * 4 2 1 6 6 C 1.34772 * 120.00104 * 179.97438 * 5 4 2 7 7 S 1.71198 * 120.00336 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99680 * 179.97438 * 6 5 4 9 9 C 1.39884 * 119.99814 * 185.53673 * 8 6 5 10 10 C 1.38936 * 120.04664 * 221.89329 * 9 8 6 11 11 C 1.38113 * 120.04280 * 180.02562 * 10 9 8 12 12 C 1.38213 * 120.12596 * 359.67496 * 11 10 9 13 13 C 1.38761 * 120.08610 * 0.60061 * 12 11 10 14 14 O 1.35901 * 120.02426 * 179.69857 * 13 12 11 15 15 C 1.42898 * 116.99922 * 359.72375 * 14 13 12 16 16 C 1.52993 * 109.47295 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47374 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99785 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00027 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00211 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99810 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47383 * 59.99863 * 21 19 17 23 23 H 1.48500 * 109.46933 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46853 * 299.99953 * 21 19 17 25 25 C 1.38629 * 119.95937 * 359.42175 * 13 12 11 26 26 H 1.08997 * 109.47182 * 300.00504 * 1 2 3 27 27 H 1.09000 * 109.46654 * 60.00256 * 1 2 3 28 28 H 1.09004 * 109.46745 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47182 * 239.99496 * 2 1 3 30 30 H 1.09010 * 109.47048 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47312 * 299.99341 * 3 2 1 32 32 H 1.08997 * 109.47669 * 59.99794 * 3 2 1 33 33 H 1.09002 * 109.47728 * 305.00160 * 4 2 1 34 34 H 1.09004 * 109.47174 * 184.99567 * 4 2 1 35 35 H 0.97005 * 119.99483 * 359.97438 * 5 4 2 36 36 H 0.96995 * 119.99710 * 5.53990 * 8 6 5 37 37 H 1.08001 * 119.97877 * 0.02562 * 10 9 8 38 38 H 1.08006 * 119.94097 * 179.97438 * 11 10 9 39 39 H 1.08001 * 119.96133 * 180.29719 * 12 11 10 40 40 H 1.09002 * 109.47081 * 300.00303 * 15 14 13 41 41 H 1.09003 * 109.46910 * 60.00196 * 15 14 13 42 42 H 1.09002 * 109.47083 * 300.00032 * 16 15 14 43 43 H 1.08992 * 109.47492 * 59.99754 * 16 15 14 44 44 H 0.96997 * 119.99748 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.06614 * 180.25263 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6525 -2.1328 1.1907 6 6 1.9965 -2.9681 2.1908 7 16 2.8868 -2.3798 3.5296 8 7 1.6395 -4.2667 2.1371 9 6 1.8941 -5.1076 3.2255 10 6 2.3703 -6.3954 3.0132 11 6 2.6212 -7.2259 4.0879 12 6 2.4059 -6.7763 5.3770 13 6 1.9250 -5.4931 5.5950 14 8 1.7079 -5.0545 6.8628 15 6 1.9906 -5.9697 7.9232 16 6 1.6869 -5.3034 9.2666 17 6 1.9857 -6.2683 10.3849 18 1 2.3548 -7.2580 10.1600 19 6 1.7878 -5.8877 11.6952 20 7 1.3387 -4.6823 11.9692 21 14 2.1588 -7.0836 13.0814 22 1 3.5920 -7.4690 13.0324 23 1 1.8639 -6.4369 14.3853 24 1 1.3147 -8.2958 12.9285 25 6 1.6715 -4.6567 4.5189 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6054 -0.2616 2.1370 34 1 3.1263 -0.6443 1.2952 35 1 1.1483 -2.4662 0.4320 36 1 1.2061 -4.6180 1.3437 37 1 2.5444 -6.7474 2.0071 38 1 2.9909 -8.2268 3.9209 39 1 2.6075 -7.4263 6.2157 40 1 1.3704 -6.8590 7.8107 41 1 3.0425 -6.2534 7.8875 42 1 2.3068 -4.4139 9.3793 43 1 0.6351 -5.0200 9.3021 44 1 1.1999 -4.4144 12.8910 45 1 1.3011 -3.6562 4.6868 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917582786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:14 Heat of formation + Delta-G solvation = -30.044392 kcal Electronic energy + Delta-G solvation = -23672.556487 eV Core-core repulsion = 20201.204852 eV Total energy + Delta-G solvation = -3471.351634 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.44439 -40.31355 -38.86055 -37.10885 -35.46025 -34.73652 -32.58211 -31.01741 -30.34941 -28.11742 -27.45602 -26.94900 -25.21390 -23.93319 -23.30046 -22.34873 -21.38876 -20.00818 -19.36122 -18.53580 -17.77239 -17.08148 -17.00386 -16.88021 -16.66717 -16.54355 -16.18099 -16.09571 -15.26150 -14.71014 -14.52227 -14.43524 -14.31516 -14.25842 -13.80022 -13.45744 -13.26118 -13.03639 -12.88543 -12.66439 -12.58241 -12.55954 -12.30060 -12.15836 -12.05651 -11.90503 -11.74107 -11.58890 -11.56477 -11.39667 -10.82841 -10.60502 -9.72805 -9.21441 -8.97987 -8.33664 -8.24815 -6.39271 -0.18816 0.55492 0.58921 0.80980 1.34308 1.41181 1.46264 1.54100 2.26041 2.41721 2.64537 2.82794 3.09000 3.64690 3.87720 3.95482 4.02287 4.16354 4.21990 4.24578 4.30257 4.42563 4.48097 4.51911 4.61325 4.64021 4.67818 4.76262 4.78558 4.91114 5.00279 5.04888 5.17900 5.18827 5.32210 5.35129 5.36392 5.42675 5.47736 5.48552 5.54073 5.66455 5.75341 6.00513 6.08850 6.30801 6.62729 6.75738 7.30730 8.88435 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018092 B = 0.002281 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.300602 B =12273.473011 C =13445.731967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.097 4.097 3 C -0.147 4.147 4 C 0.126 3.874 5 N -0.648 5.648 6 C 0.579 3.421 7 S -0.722 6.722 8 N -0.608 5.608 9 C 0.159 3.841 10 C -0.151 4.151 11 C -0.067 4.067 12 C -0.214 4.214 13 C 0.112 3.888 14 O -0.344 6.344 15 C 0.086 3.914 16 C 0.027 3.973 17 C -0.545 4.545 18 H 0.074 0.926 19 C -0.002 4.002 20 N -0.933 5.933 21 Si 0.980 3.020 22 H -0.263 1.263 23 H -0.283 1.283 24 H -0.261 1.261 25 C -0.130 4.130 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.420 0.580 36 H 0.432 0.568 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.132 0.868 40 H 0.066 0.934 41 H 0.058 0.942 42 H -0.008 1.008 43 H -0.003 1.003 44 H 0.266 0.734 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 1.468 -34.318 34.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.116 4.116 3 C -0.205 4.205 4 C 0.003 3.997 5 N -0.276 5.276 6 C 0.216 3.784 7 S -0.595 6.595 8 N -0.236 5.236 9 C 0.066 3.934 10 C -0.171 4.171 11 C -0.086 4.086 12 C -0.234 4.234 13 C 0.065 3.935 14 O -0.259 6.259 15 C 0.011 3.989 16 C -0.010 4.010 17 C -0.583 4.583 18 H 0.092 0.908 19 C -0.201 4.201 20 N -0.572 5.572 21 Si 0.803 3.197 22 H -0.188 1.188 23 H -0.209 1.209 24 H -0.185 1.185 25 C -0.152 4.152 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.261 0.739 36 H 0.275 0.725 37 H 0.185 0.815 38 H 0.183 0.817 39 H 0.150 0.850 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.010 0.990 43 H 0.015 0.985 44 H 0.075 0.925 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.345 2.329 -33.258 33.367 hybrid contribution -0.626 -0.485 0.222 0.823 sum -1.971 1.844 -33.036 33.146 Atomic orbital electron populations 1.21933 0.94080 1.02293 1.02683 1.21358 0.96739 0.97172 0.96287 1.21771 1.01504 0.94369 1.02825 1.21956 1.01271 0.76405 1.00090 1.44945 1.52773 1.09922 1.20001 1.21728 0.83392 0.83693 0.89575 1.94163 1.53749 1.81866 1.29711 1.41837 1.57879 1.05310 1.18528 1.16961 1.01008 0.90721 0.84741 1.21078 1.02548 0.92098 1.01377 1.21063 0.96829 1.00775 0.89947 1.21591 1.06369 0.95105 1.00314 1.19155 0.96545 0.93489 0.84311 1.86107 1.82376 1.44041 1.13346 1.22858 0.99675 0.91647 0.84674 1.18965 0.95708 0.95976 0.90327 1.21375 1.45269 1.00309 0.91320 0.90791 1.26121 0.94440 0.97370 1.02123 1.70140 1.46038 1.20648 1.20404 0.85286 0.79317 0.78384 0.76747 1.18810 1.20851 1.18523 1.20362 1.04682 0.99633 0.90519 0.93286 0.90851 0.92164 0.88574 0.92208 0.90595 0.92848 0.91228 0.90508 0.73904 0.72491 0.81526 0.81666 0.84990 0.91595 0.92346 0.99004 0.98451 0.92481 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.07 71.98 0.65 -0.25 16 2 C -0.10 -0.63 2.96 -10.79 -0.03 -0.66 16 3 C -0.15 -1.09 9.19 71.98 0.66 -0.43 16 4 C 0.13 1.70 4.52 86.38 0.39 2.09 16 5 N -0.65 -7.60 5.29 -350.15 -1.85 -9.45 16 6 C 0.58 12.24 7.74 179.05 1.39 13.62 16 7 S -0.72 -26.20 25.06 -56.49 -1.42 -27.62 16 8 N -0.61 -9.95 5.33 -190.04 -1.01 -10.96 16 9 C 0.16 3.90 5.91 38.15 0.23 4.12 16 10 C -0.15 -2.85 9.97 22.41 0.22 -2.63 16 11 C -0.07 -1.46 10.03 22.23 0.22 -1.24 16 12 C -0.21 -6.63 9.04 22.39 0.20 -6.43 16 13 C 0.11 4.32 6.68 22.49 0.15 4.47 16 14 O -0.34 -16.36 10.13 -92.44 -0.94 -17.30 16 15 C 0.09 4.03 4.68 71.98 0.34 4.37 16 16 C 0.03 1.60 5.34 29.85 0.16 1.76 16 17 C -0.55 -31.98 9.11 25.60 0.23 -31.75 16 18 H 0.07 4.00 7.74 -2.91 -0.02 3.97 16 19 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 20 N -0.93 -59.13 13.29 21.45 0.28 -58.84 16 21 Si 0.98 44.80 29.54 68.60 2.03 46.82 16 22 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 25 C -0.13 -4.55 7.79 22.49 0.18 -4.38 16 26 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.06 0.25 7.18 -2.38 -0.02 0.23 16 29 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 1.31 7.99 -2.39 -0.02 1.29 16 34 H 0.08 1.30 7.99 -2.39 -0.02 1.28 16 35 H 0.42 1.33 7.67 -92.70 -0.71 0.62 16 36 H 0.43 2.53 8.84 -92.71 -0.82 1.71 16 37 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 39 H 0.13 3.99 6.29 -2.91 -0.02 3.97 16 40 H 0.07 2.82 7.67 -2.39 -0.02 2.80 16 41 H 0.06 2.60 7.65 -2.39 -0.02 2.58 16 42 H -0.01 -0.55 8.14 -2.39 -0.02 -0.56 16 43 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.27 15.76 8.31 -92.71 -0.77 14.98 16 45 H 0.12 4.83 6.27 -4.54 -0.03 4.80 16 Total: -1.00 -85.93 382.30 2.00 -83.93 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -0.54 Total: 10.44 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 5.45 Total: -17.01 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -2.58 Total: -79.26 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.94 Total: -17.30 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: -26.20 SS G_CDS: -1.42 Total: -27.62 kcal Total: -85.93 2.00 -83.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917582786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.882 kcal (2) G-P(sol) polarization free energy of solvation -85.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds