Wall clock time and date at job start Tue Mar 31 2020 13:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47274 * 2 1 4 4 C 1.53000 * 109.47619 * 120.00520 * 2 1 3 5 5 C 1.50698 * 109.46801 * 64.99670 * 4 2 1 6 6 N 1.29433 * 124.80790 * 89.98448 * 5 4 2 7 7 C 1.30939 * 117.36636 * 180.02562 * 6 5 4 8 8 C 1.35662 * 114.19386 * 359.97438 * 7 6 5 9 9 C 1.46676 * 126.13267 * 179.97438 * 8 7 6 10 10 O 1.21682 * 120.00743 * 195.46431 * 9 8 7 11 11 N 1.34782 * 119.99693 * 15.47044 * 9 8 7 12 12 C 1.46495 * 120.00042 * 6.97967 * 11 9 8 13 13 C 1.50699 * 109.46922 * 263.77140 * 12 11 9 14 14 H 1.08001 * 120.00507 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99957 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00039 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99999 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47292 * 59.99916 * 17 15 13 19 19 H 1.48502 * 109.47274 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47264 * 299.99523 * 17 15 13 21 21 C 1.46504 * 119.99826 * 186.70304 * 11 9 8 22 22 C 1.53002 * 109.46985 * 84.71934 * 21 11 9 23 23 C 1.53002 * 117.49533 * 241.74483 * 22 21 11 24 24 C 1.52996 * 117.49847 * 173.08462 * 22 21 11 25 25 S 1.70956 * 124.80405 * 270.32824 * 5 4 2 26 26 H 1.09003 * 109.47501 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47198 * 299.99563 * 1 2 3 28 28 H 1.09000 * 109.47610 * 59.99664 * 1 2 3 29 29 H 1.09007 * 109.46919 * 240.00729 * 2 1 3 30 30 H 1.09000 * 109.46853 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47076 * 300.00663 * 3 2 1 32 32 H 1.09007 * 109.46552 * 60.00505 * 3 2 1 33 33 H 1.08995 * 109.46832 * 305.00025 * 4 2 1 34 34 H 1.08998 * 109.47286 * 184.99501 * 4 2 1 35 35 H 1.08002 * 122.90059 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.47331 * 23.77188 * 12 11 9 37 37 H 1.09003 * 109.47402 * 143.77627 * 12 11 9 38 38 H 0.97000 * 120.00177 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.47238 * 204.71658 * 21 11 9 40 40 H 1.08997 * 109.46967 * 324.71752 * 21 11 9 41 41 H 1.08999 * 115.54769 * 27.41366 * 22 21 11 42 42 H 1.08999 * 117.50032 * 359.97438 * 23 22 21 43 43 H 1.08996 * 117.49779 * 145.02537 * 23 22 21 44 44 H 1.08992 * 117.50104 * 214.97912 * 24 22 21 45 45 H 1.09000 * 117.49888 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6413 -2.1734 1.1886 6 7 2.3538 -3.1136 0.6560 7 6 1.8651 -4.3281 0.6837 8 6 0.6519 -4.4257 1.2829 9 6 -0.1304 -5.6542 1.4568 10 8 -1.3098 -5.5883 1.7492 11 7 0.4570 -6.8561 1.2928 12 6 1.9056 -6.9421 1.0925 13 6 2.2047 -7.0261 -0.3821 14 1 1.3965 -7.0160 -1.0985 15 6 3.5101 -7.1159 -0.8168 16 7 4.4943 -7.1278 0.0554 17 14 3.8808 -7.2193 -2.6447 18 1 3.3588 -6.0069 -3.3250 19 1 5.3493 -7.3066 -2.8478 20 1 3.2293 -8.4260 -3.2145 21 6 -0.3524 -8.0769 1.3210 22 6 -0.9399 -8.3314 -0.0687 23 6 -2.4641 -8.3334 -0.2017 24 6 -1.6860 -9.6487 -0.2898 25 16 0.1802 -2.8106 1.8064 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6055 -0.2619 2.1369 34 1 3.1264 -0.6445 1.2949 35 1 2.3832 -5.1785 0.2656 36 1 2.3835 -6.0560 1.5102 37 1 2.2894 -7.8316 1.5922 38 1 5.4127 -7.1913 -0.2504 39 1 0.2732 -8.9210 1.6111 40 1 -1.1616 -7.9598 2.0417 41 1 -0.3623 -7.9339 -0.9032 42 1 -3.0483 -8.1538 0.7009 43 1 -2.8893 -7.9377 -1.1239 44 1 -1.5997 -10.1177 -1.2698 45 1 -1.7579 -10.3342 0.5546 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931938905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:36 Heat of formation + Delta-G solvation = 31.503990 kcal Electronic energy + Delta-G solvation = -25452.086264 eV Core-core repulsion = 21983.403568 eV Total energy + Delta-G solvation = -3468.682696 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.83278 -38.67329 -36.81716 -36.32245 -34.90792 -32.68501 -30.84886 -28.39595 -27.68202 -27.25139 -25.92457 -23.80739 -23.03734 -21.99581 -21.05791 -20.52941 -19.83467 -18.56920 -17.34304 -16.77711 -16.12832 -15.63867 -15.14708 -14.93831 -14.60702 -14.52469 -14.21973 -14.02556 -13.78450 -13.55759 -13.07343 -12.73766 -12.55593 -12.44008 -12.31482 -12.09864 -11.90496 -11.54964 -11.30556 -11.18356 -11.11990 -11.06613 -10.97221 -10.91572 -10.74078 -10.45425 -10.26374 -9.91245 -9.76632 -9.55576 -9.45398 -8.96880 -8.87924 -8.71505 -8.21582 -7.83477 -6.33234 -4.43356 0.84396 1.69035 2.19639 3.12568 3.19848 3.25024 3.27872 3.83845 3.94161 4.22237 4.27057 4.43514 4.80171 4.83197 4.97435 5.09918 5.17099 5.28285 5.36099 5.40536 5.49354 5.52715 5.58191 5.70604 5.78700 5.83092 5.89724 5.92739 5.93552 6.00903 6.09909 6.15702 6.18468 6.22896 6.23944 6.29561 6.44855 6.58802 6.79697 7.07776 7.13972 7.40763 7.62543 7.85927 8.19084 8.27149 8.64044 8.87974 9.24489 10.70904 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010566 B = 0.004891 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.333264 B = 5723.696330 C = 7416.672138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.038 4.038 5 C 0.038 3.962 6 N -0.474 5.474 7 C 0.084 3.916 8 C -0.291 4.291 9 C 0.595 3.405 10 O -0.567 6.567 11 N -0.582 5.582 12 C 0.216 3.784 13 C -0.548 4.548 14 H 0.068 0.932 15 C 0.071 3.929 16 N -0.877 5.877 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.158 3.842 22 C -0.155 4.155 23 C -0.178 4.178 24 C -0.181 4.181 25 S 0.155 5.845 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.249 0.751 36 H 0.053 0.947 37 H 0.039 0.961 38 H 0.271 0.729 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.806 8.694 1.767 10.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.079 4.079 5 C -0.238 4.238 6 N -0.188 5.188 7 C -0.070 4.070 8 C -0.414 4.414 9 C 0.382 3.618 10 O -0.449 6.449 11 N -0.311 5.311 12 C 0.096 3.904 13 C -0.586 4.586 14 H 0.086 0.914 15 C -0.135 4.135 16 N -0.513 5.513 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.199 1.199 21 C 0.035 3.965 22 C -0.174 4.174 23 C -0.215 4.215 24 C -0.219 4.219 25 S 0.411 5.589 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.264 0.736 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.133 0.867 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.547 9.288 2.266 11.588 hybrid contribution 0.864 -0.956 -1.488 1.968 sum -5.684 8.333 0.778 10.116 Atomic orbital electron populations 1.22017 0.95043 1.02556 1.01869 1.21104 0.96146 0.96019 0.97948 1.21812 1.01162 0.95314 1.01829 1.20353 1.02761 0.85798 0.98953 1.27495 0.95075 1.00590 1.00600 1.66386 1.33820 1.00152 1.18441 1.25004 0.91841 0.95995 0.94120 1.25708 1.02413 0.97867 1.15426 1.16723 0.85616 0.82397 0.77049 1.90718 1.15961 1.87438 1.50761 1.47886 1.10476 1.04092 1.68646 1.20070 0.73668 0.99562 0.97082 1.21432 0.92638 1.52637 0.91880 0.91392 1.25004 0.95970 0.94029 0.98466 1.69906 0.99970 1.47201 1.34221 0.86554 0.77500 0.79093 0.84561 1.19741 1.20876 1.19895 1.20844 0.94623 0.86624 0.94431 1.22868 0.93873 1.00353 1.00289 1.22962 0.94975 1.00851 1.02721 1.22894 1.05576 0.90957 1.02463 1.83596 1.20437 0.99688 1.55138 0.92149 0.92459 0.92401 0.90343 0.92409 0.92474 0.92586 0.89925 0.88772 0.73619 0.92945 0.94271 0.91925 0.90114 0.91044 0.86667 0.88987 0.89624 0.89231 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.89 37.15 0.33 -1.39 16 2 C -0.09 -1.03 2.91 -90.62 -0.26 -1.29 16 3 C -0.14 -1.24 9.19 37.16 0.34 -0.90 16 4 C -0.04 -0.46 5.27 -27.88 -0.15 -0.61 16 5 C 0.04 0.63 6.02 -13.29 -0.08 0.55 16 6 N -0.47 -9.65 10.51 -11.50 -0.12 -9.77 16 7 C 0.08 1.86 9.13 -18.85 -0.17 1.68 16 8 C -0.29 -6.16 6.18 -37.10 -0.23 -6.38 16 9 C 0.59 13.17 7.59 -12.85 -0.10 13.07 16 10 O -0.57 -13.18 16.63 5.20 0.09 -13.09 16 11 N -0.58 -12.37 2.47 -176.61 -0.44 -12.81 16 12 C 0.22 4.99 4.66 -5.20 -0.02 4.96 16 13 C -0.55 -13.37 7.15 -34.44 -0.25 -13.62 16 14 H 0.07 1.69 6.32 -52.49 -0.33 1.35 16 15 C 0.07 1.79 5.14 -17.82 -0.09 1.69 16 16 N -0.88 -22.94 13.29 55.43 0.74 -22.20 16 17 Si 0.90 19.93 29.54 -169.99 -5.02 14.90 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 C 0.16 2.93 5.73 -4.04 -0.02 2.91 16 22 C -0.15 -2.74 5.97 -90.62 -0.54 -3.28 16 23 C -0.18 -2.78 10.18 -26.69 -0.27 -3.05 16 24 C -0.18 -2.62 10.25 -26.69 -0.27 -2.89 16 25 S 0.16 2.65 21.48 -107.50 -2.31 0.34 16 26 H 0.06 0.78 6.11 -51.93 -0.32 0.46 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.25 6.01 2.85 -52.49 -0.15 5.86 16 36 H 0.05 1.28 4.81 -51.93 -0.25 1.03 16 37 H 0.04 0.94 7.95 -51.93 -0.41 0.53 16 38 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.08 1.40 7.90 -51.93 -0.41 0.99 16 40 H 0.07 1.30 7.23 -51.93 -0.38 0.92 16 41 H 0.12 2.31 6.56 -51.93 -0.34 1.97 16 42 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 375.13 15.07 5.65 5.65 Total: -1.00 -27.70 375.13 -9.99 -37.69 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.79 Total: 7.84 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -1.79 Total: -8.55 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.18 Total: -44.78 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.31 Total: 0.34 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.70 -9.99 -37.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931938905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.189 kcal (2) G-P(sol) polarization free energy of solvation -27.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds