Wall clock time and date at job start Tue Mar 31 2020 13:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47274 * 2 1 4 4 C 1.53000 * 109.47619 * 120.00520 * 2 1 3 5 5 C 1.50698 * 109.46801 * 64.99670 * 4 2 1 6 6 N 1.29433 * 124.80790 * 89.98448 * 5 4 2 7 7 C 1.30939 * 117.36636 * 180.02562 * 6 5 4 8 8 C 1.35662 * 114.19386 * 359.97438 * 7 6 5 9 9 C 1.46676 * 126.13267 * 179.97438 * 8 7 6 10 10 O 1.21682 * 120.00743 * 195.46431 * 9 8 7 11 11 N 1.34782 * 119.99693 * 15.47044 * 9 8 7 12 12 C 1.46495 * 120.00042 * 6.97967 * 11 9 8 13 13 C 1.50699 * 109.46922 * 263.77140 * 12 11 9 14 14 H 1.08001 * 120.00507 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99957 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00039 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99999 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47292 * 59.99916 * 17 15 13 19 19 H 1.48502 * 109.47274 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47264 * 299.99523 * 17 15 13 21 21 C 1.46504 * 119.99826 * 186.70304 * 11 9 8 22 22 C 1.53002 * 109.46985 * 84.71934 * 21 11 9 23 23 C 1.53002 * 117.49533 * 241.74483 * 22 21 11 24 24 C 1.52996 * 117.49847 * 173.08462 * 22 21 11 25 25 S 1.70956 * 124.80405 * 270.32824 * 5 4 2 26 26 H 1.09003 * 109.47501 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47198 * 299.99563 * 1 2 3 28 28 H 1.09000 * 109.47610 * 59.99664 * 1 2 3 29 29 H 1.09007 * 109.46919 * 240.00729 * 2 1 3 30 30 H 1.09000 * 109.46853 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47076 * 300.00663 * 3 2 1 32 32 H 1.09007 * 109.46552 * 60.00505 * 3 2 1 33 33 H 1.08995 * 109.46832 * 305.00025 * 4 2 1 34 34 H 1.08998 * 109.47286 * 184.99501 * 4 2 1 35 35 H 1.08002 * 122.90059 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.47331 * 23.77188 * 12 11 9 37 37 H 1.09003 * 109.47402 * 143.77627 * 12 11 9 38 38 H 0.97000 * 120.00177 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.47238 * 204.71658 * 21 11 9 40 40 H 1.08997 * 109.46967 * 324.71752 * 21 11 9 41 41 H 1.08999 * 115.54769 * 27.41366 * 22 21 11 42 42 H 1.08999 * 117.50032 * 359.97438 * 23 22 21 43 43 H 1.08996 * 117.49779 * 145.02537 * 23 22 21 44 44 H 1.08992 * 117.50104 * 214.97912 * 24 22 21 45 45 H 1.09000 * 117.49888 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6413 -2.1734 1.1886 6 7 2.3538 -3.1136 0.6560 7 6 1.8651 -4.3281 0.6837 8 6 0.6519 -4.4257 1.2829 9 6 -0.1304 -5.6542 1.4568 10 8 -1.3098 -5.5883 1.7492 11 7 0.4570 -6.8561 1.2928 12 6 1.9056 -6.9421 1.0925 13 6 2.2047 -7.0261 -0.3821 14 1 1.3965 -7.0160 -1.0985 15 6 3.5101 -7.1159 -0.8168 16 7 4.4943 -7.1278 0.0554 17 14 3.8808 -7.2193 -2.6447 18 1 3.3588 -6.0069 -3.3250 19 1 5.3493 -7.3066 -2.8478 20 1 3.2293 -8.4260 -3.2145 21 6 -0.3524 -8.0769 1.3210 22 6 -0.9399 -8.3314 -0.0687 23 6 -2.4641 -8.3334 -0.2017 24 6 -1.6860 -9.6487 -0.2898 25 16 0.1802 -2.8106 1.8064 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6055 -0.2619 2.1369 34 1 3.1264 -0.6445 1.2949 35 1 2.3832 -5.1785 0.2656 36 1 2.3835 -6.0560 1.5102 37 1 2.2894 -7.8316 1.5922 38 1 5.4127 -7.1913 -0.2504 39 1 0.2732 -8.9210 1.6111 40 1 -1.1616 -7.9598 2.0417 41 1 -0.3623 -7.9339 -0.9032 42 1 -3.0483 -8.1538 0.7009 43 1 -2.8893 -7.9377 -1.1239 44 1 -1.5997 -10.1177 -1.2698 45 1 -1.7579 -10.3342 0.5546 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931938905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:35 Heat of formation + Delta-G solvation = 17.871279 kcal Electronic energy + Delta-G solvation = -25452.677423 eV Core-core repulsion = 21983.403568 eV Total energy + Delta-G solvation = -3469.273855 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.44827 -40.21381 -38.20332 -37.38309 -36.59040 -34.55773 -32.25090 -29.83531 -29.36325 -28.03294 -27.42845 -25.34774 -24.74727 -23.20855 -22.55665 -21.75778 -21.11064 -20.05526 -18.89238 -18.66915 -17.67718 -17.22784 -16.53861 -16.35102 -16.14363 -15.81859 -15.73090 -15.41846 -15.06704 -14.88558 -14.51196 -14.30983 -14.14199 -13.70893 -13.54029 -13.20745 -13.04889 -12.94389 -12.80454 -12.74293 -12.62088 -12.34940 -12.19943 -12.10457 -11.93784 -11.81635 -11.66028 -11.60466 -11.36517 -11.12570 -10.79343 -10.69196 -10.47179 -10.37254 -9.72658 -9.54850 -8.27119 -6.41470 -0.66269 0.24433 0.70757 1.39523 1.41972 1.47567 1.53563 2.17853 2.28077 2.39643 2.95622 3.01869 3.19673 3.72709 3.87035 3.90820 3.93220 4.03903 4.10698 4.15621 4.31401 4.43566 4.47875 4.63451 4.65993 4.71858 4.74473 4.78030 4.81651 4.87725 4.91045 5.01159 5.01190 5.08336 5.12007 5.26821 5.26968 5.34858 5.39349 5.44213 5.47004 5.61323 5.74359 5.94451 6.41832 6.71229 6.75585 7.13679 7.29808 8.76852 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010566 B = 0.004891 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.333264 B = 5723.696330 C = 7416.672138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.089 4.089 3 C -0.138 4.138 4 C -0.041 4.041 5 C 0.055 3.945 6 N -0.508 5.508 7 C 0.077 3.923 8 C -0.329 4.329 9 C 0.590 3.410 10 O -0.584 6.584 11 N -0.583 5.583 12 C 0.232 3.768 13 C -0.543 4.543 14 H 0.059 0.941 15 C 0.034 3.966 16 N -0.905 5.905 17 Si 0.947 3.053 18 H -0.277 1.277 19 H -0.279 1.279 20 H -0.267 1.267 21 C 0.156 3.844 22 C -0.183 4.183 23 C -0.174 4.174 24 C -0.153 4.153 25 S 0.211 5.789 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.223 0.777 36 H 0.040 0.960 37 H 0.026 0.974 38 H 0.271 0.729 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.744 10.126 1.773 12.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.110 4.110 3 C -0.195 4.195 4 C -0.082 4.082 5 C -0.220 4.220 6 N -0.223 5.223 7 C -0.079 4.079 8 C -0.452 4.452 9 C 0.378 3.622 10 O -0.467 6.467 11 N -0.311 5.311 12 C 0.111 3.889 13 C -0.581 4.581 14 H 0.077 0.923 15 C -0.169 4.169 16 N -0.542 5.542 17 Si 0.773 3.227 18 H -0.202 1.202 19 H -0.204 1.204 20 H -0.192 1.192 21 C 0.034 3.966 22 C -0.202 4.202 23 C -0.211 4.211 24 C -0.190 4.190 25 S 0.468 5.532 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.119 0.881 35 H 0.238 0.762 36 H 0.057 0.943 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.121 0.879 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.503 10.704 2.273 13.268 hybrid contribution 1.111 -1.284 -1.457 2.237 sum -6.391 9.420 0.816 11.413 Atomic orbital electron populations 1.22039 0.94722 1.01347 1.03481 1.21087 0.96389 0.97362 0.96127 1.21769 1.01341 0.93285 1.03109 1.20694 1.03580 0.82917 1.00991 1.28308 0.94276 1.01816 0.97587 1.66381 1.35127 1.00195 1.20644 1.24559 0.92178 0.96354 0.94766 1.25772 1.02706 0.99740 1.17021 1.16916 0.85571 0.82901 0.76764 1.90682 1.16426 1.87733 1.51899 1.47913 1.09951 1.05035 1.68234 1.19747 0.74733 0.98153 0.96250 1.21470 0.92423 1.51907 0.92306 0.92255 1.25575 0.95859 0.93892 1.01556 1.69984 1.00168 1.48470 1.35612 0.85757 0.77403 0.78869 0.80713 1.20242 1.20411 1.19223 1.21003 0.94543 0.85775 0.95329 1.22675 0.95018 1.03953 0.98596 1.22997 0.93275 1.01776 1.03042 1.23010 1.02088 0.90013 1.03929 1.83278 1.19710 0.96318 1.53868 0.94623 0.90450 0.91329 0.92757 0.92153 0.91714 0.90813 0.86714 0.88098 0.76180 0.94266 0.95556 0.91923 0.89348 0.90628 0.89526 0.88799 0.89153 0.87938 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 8.89 71.98 0.64 -2.44 16 2 C -0.09 -1.80 2.91 -10.79 -0.03 -1.84 16 3 C -0.14 -1.95 9.19 71.98 0.66 -1.28 16 4 C -0.04 -0.91 5.27 29.85 0.16 -0.75 16 5 C 0.05 1.78 6.02 88.46 0.53 2.32 16 6 N -0.51 -21.04 10.51 -190.30 -2.00 -23.04 16 7 C 0.08 3.50 9.13 84.23 0.77 4.27 16 8 C -0.33 -14.25 6.18 23.88 0.15 -14.10 16 9 C 0.59 26.82 7.59 86.45 0.66 27.48 16 10 O -0.58 -27.44 16.63 -4.29 -0.07 -27.51 16 11 N -0.58 -25.65 2.47 -830.88 -2.05 -27.70 16 12 C 0.23 11.19 4.66 85.63 0.40 11.58 16 13 C -0.54 -27.48 7.15 25.60 0.18 -27.30 16 14 H 0.06 3.07 6.32 -2.91 -0.02 3.05 16 15 C 0.03 1.75 5.14 84.66 0.44 2.19 16 16 N -0.91 -48.63 13.29 21.45 0.28 -48.34 16 17 Si 0.95 41.53 29.54 68.60 2.03 43.56 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 21 C 0.16 5.86 5.73 86.38 0.49 6.36 16 22 C -0.18 -6.51 5.97 -10.79 -0.06 -6.57 16 23 C -0.17 -5.26 10.18 30.62 0.31 -4.95 16 24 C -0.15 -4.14 10.25 30.62 0.31 -3.83 16 25 S 0.21 7.02 21.48 -56.49 -1.21 5.81 16 26 H 0.03 0.86 6.11 -2.39 -0.01 0.85 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.22 11.31 2.85 -2.91 -0.01 11.30 16 36 H 0.04 2.03 4.81 -2.39 -0.01 2.02 16 37 H 0.03 1.32 7.95 -2.39 -0.02 1.30 16 38 H 0.27 13.94 8.31 -92.71 -0.77 13.16 16 39 H 0.09 3.10 7.90 -2.39 -0.02 3.08 16 40 H 0.08 2.75 7.23 -2.39 -0.02 2.73 16 41 H 0.09 3.59 6.56 -2.39 -0.02 3.57 16 42 H 0.09 2.81 8.03 -2.39 -0.02 2.79 16 43 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -61.52 375.13 3.57 -57.94 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.99 Total: 28.16 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 5.61 Total: -8.87 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -3.77 Total: -99.08 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.07 Total: -27.51 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 7.02 SS G_CDS: -1.21 Total: 5.81 kcal Total: -61.52 3.57 -57.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931938905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.816 kcal (2) G-P(sol) polarization free energy of solvation -61.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds