Wall clock time and date at job start Tue Mar 31 2020 12:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46748 * 2 1 4 4 C 1.50693 * 109.47352 * 120.00119 * 2 1 3 5 5 O 1.21282 * 119.99960 * 5.48307 * 4 2 1 6 6 N 1.34773 * 120.00211 * 185.47384 * 4 2 1 7 7 C 1.46963 * 120.59881 * 173.75638 * 6 4 2 8 8 C 1.53814 * 108.39720 * 124.76018 * 7 6 4 9 9 N 1.46970 * 108.57712 * 49.64571 * 8 7 6 10 10 C 1.36930 * 120.59625 * 124.62341 * 9 8 7 11 11 H 1.07997 * 120.00515 * 208.84489 * 10 9 8 12 12 C 1.38813 * 119.99863 * 28.84277 * 10 9 8 13 13 N 1.31615 * 120.00126 * 15.67342 * 12 10 9 14 14 Si 1.86804 * 119.99991 * 195.66663 * 12 10 9 15 15 H 1.48504 * 109.46804 * 90.00334 * 14 12 10 16 16 H 1.48500 * 109.47340 * 210.00124 * 14 12 10 17 17 H 1.48498 * 109.47345 * 330.00587 * 14 12 10 18 18 C 1.46962 * 118.80846 * 304.64039 * 9 8 7 19 19 C 1.46970 * 120.59362 * 354.04588 * 6 4 2 20 20 C 1.50698 * 109.46813 * 240.00289 * 2 1 3 21 21 C 1.38250 * 119.97849 * 283.34122 * 20 2 1 22 22 C 1.38192 * 120.02768 * 179.72879 * 21 20 2 23 23 C 1.38458 * 119.97480 * 0.52482 * 22 21 20 24 24 F 1.35101 * 120.02594 * 179.73133 * 23 22 21 25 25 C 1.38455 * 119.94938 * 359.74770 * 23 22 21 26 26 C 1.38195 * 119.97506 * 0.02562 * 25 23 22 27 27 H 1.09000 * 109.46938 * 299.99432 * 1 2 3 28 28 H 1.08999 * 109.47681 * 60.00156 * 1 2 3 29 29 H 1.09004 * 109.46933 * 180.02562 * 1 2 3 30 30 H 0.96702 * 113.99820 * 185.53921 * 3 2 1 31 31 H 1.08999 * 109.61312 * 244.55213 * 7 6 4 32 32 H 1.08999 * 109.60854 * 5.05706 * 7 6 4 33 33 H 1.08992 * 109.74504 * 289.85235 * 8 7 6 34 34 H 1.09000 * 109.52954 * 169.30644 * 8 7 6 35 35 H 0.97000 * 120.00000 * 179.97438 * 13 12 10 36 36 H 1.08997 * 109.61338 * 295.48524 * 18 9 8 37 37 H 1.09001 * 109.60771 * 174.97142 * 18 9 8 38 38 H 1.09008 * 109.60534 * 354.93941 * 19 6 4 39 39 H 1.08992 * 109.61298 * 115.45187 * 19 6 4 40 40 H 1.07999 * 119.97987 * 359.97438 * 21 20 2 41 41 H 1.08000 * 120.01094 * 180.25470 * 22 21 20 42 42 H 1.08004 * 120.01699 * 179.97438 * 25 23 22 43 43 H 1.07999 * 119.99270 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.2488 -1.2575 1.9772 6 7 3.3524 -0.7380 1.5008 7 6 3.8457 -1.3066 2.7631 8 6 4.8740 -2.4018 2.4331 9 7 5.8456 -1.8581 1.4738 10 6 7.1867 -1.8852 1.7490 11 1 7.8382 -1.1295 1.3357 12 6 7.7089 -2.8841 2.5592 13 7 7.0010 -3.9649 2.8105 14 14 9.4164 -2.6945 3.2927 15 1 9.3162 -2.0206 4.6122 16 1 10.0320 -4.0346 3.4668 17 1 10.2583 -1.8775 2.3823 18 6 5.3520 -1.2845 0.2140 19 6 4.3241 -0.1943 0.5415 20 6 2.0323 -0.7103 -1.2305 21 6 2.0020 -2.0912 -1.2918 22 6 2.4571 -2.7434 -2.4219 23 6 2.9537 -2.0139 -3.4888 24 9 3.4039 -2.6507 -4.5920 25 6 2.9888 -0.6313 -3.4242 26 6 2.5288 0.0190 -2.2949 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 2.9664 1.4251 -0.0853 31 1 4.3182 -0.5241 3.3569 32 1 3.0139 -1.7391 3.3192 33 1 4.3681 -3.2616 1.9940 34 1 5.3897 -2.7040 3.3446 35 1 7.3661 -4.6630 3.3764 36 1 4.8801 -2.0647 -0.3832 37 1 6.1834 -0.8487 -0.3400 38 1 3.8082 0.1079 -0.3700 39 1 4.8299 0.6655 0.9807 40 1 1.6188 -2.6601 -0.4576 41 1 2.4295 -3.8219 -2.4711 42 1 3.3763 -0.0612 -4.2556 43 1 2.5564 1.0974 -2.2440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933236221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:55 Heat of formation + Delta-G solvation = -59.419378 kcal Electronic energy + Delta-G solvation = -28932.015930 eV Core-core repulsion = 24893.177324 eV Total energy + Delta-G solvation = -4038.838605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.97017 -41.06020 -38.73469 -37.06985 -36.73611 -33.94787 -32.28381 -31.27990 -31.19982 -30.36918 -29.17584 -27.18958 -24.71371 -23.63411 -23.15846 -22.89067 -21.87962 -20.32938 -19.28384 -18.12163 -17.59265 -17.24158 -16.50660 -16.12731 -15.90057 -15.64456 -14.90359 -14.80210 -14.60372 -14.30544 -13.92861 -13.70022 -13.69006 -13.42520 -13.35507 -13.30194 -13.07365 -12.54623 -12.42961 -12.29514 -12.08649 -11.80933 -11.69767 -11.26733 -11.16430 -10.99335 -10.88713 -10.82089 -10.60967 -10.30830 -10.03398 -9.91772 -9.43489 -9.23341 -8.65280 -8.60448 -8.35925 -6.77545 -5.89944 -3.37012 0.91650 1.08240 2.66700 3.21239 3.31229 3.38164 3.39428 3.40694 4.00421 4.11578 4.29139 4.38237 4.52341 4.65411 4.75939 4.96005 5.06355 5.12523 5.26456 5.27615 5.58233 5.59997 5.62578 5.68712 5.73454 5.74840 5.81970 5.97838 6.03215 6.05866 6.10405 6.21271 6.25674 6.28361 6.40092 6.60691 6.70777 6.74302 7.17683 7.24056 7.48793 7.66726 7.73720 8.30749 8.34142 9.06471 9.68454 10.24978 11.17397 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013275 B = 0.004765 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.699161 B = 5874.448897 C = 7069.422949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.165 3.835 3 O -0.545 6.545 4 C 0.493 3.507 5 O -0.542 6.542 6 N -0.587 5.587 7 C 0.084 3.916 8 C 0.160 3.840 9 N -0.589 5.589 10 C -0.259 4.259 11 H 0.068 0.932 12 C 0.006 3.994 13 N -0.901 5.901 14 Si 0.906 3.094 15 H -0.286 1.286 16 H -0.290 1.290 17 H -0.278 1.278 18 C 0.136 3.864 19 C 0.073 3.927 20 C -0.127 4.127 21 C -0.068 4.068 22 C -0.143 4.143 23 C 0.103 3.897 24 F -0.139 7.139 25 C -0.150 4.150 26 C -0.081 4.081 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.380 0.620 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.024 0.976 34 H 0.101 0.899 35 H 0.256 0.744 36 H 0.024 0.976 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.184 8.095 -10.152 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.121 3.879 3 O -0.355 6.355 4 C 0.279 3.721 5 O -0.420 6.420 6 N -0.319 5.319 7 C -0.040 4.040 8 C 0.033 3.967 9 N -0.311 5.311 10 C -0.388 4.388 11 H 0.085 0.915 12 C -0.193 4.193 13 N -0.545 5.545 14 Si 0.735 3.265 15 H -0.213 1.213 16 H -0.217 1.217 17 H -0.204 1.204 18 C 0.009 3.991 19 C -0.052 4.052 20 C -0.128 4.128 21 C -0.086 4.086 22 C -0.162 4.162 23 C 0.084 3.916 24 F -0.118 7.118 25 C -0.169 4.169 26 C -0.099 4.099 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.232 0.768 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.042 0.958 34 H 0.119 0.881 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.101 7.747 -9.630 16.613 hybrid contribution 1.766 -0.305 0.101 1.795 sum -9.335 7.442 -9.529 15.276 Atomic orbital electron populations 1.21559 0.89106 1.03584 1.03219 1.20255 0.96705 0.81690 0.89262 1.86625 1.28555 1.24257 1.96064 1.21033 0.82637 0.81078 0.87386 1.90665 1.55045 1.46121 1.50146 1.48072 1.04874 1.58757 1.20237 1.22680 0.98717 0.98388 0.84166 1.21275 0.88406 0.90819 0.96152 1.43966 1.02915 1.70225 1.14032 1.19188 0.83489 1.07143 1.29010 0.91461 1.25103 0.97953 0.94542 1.01745 1.69995 1.37877 1.06815 1.39779 0.86246 0.83828 0.76984 0.79413 1.21296 1.21672 1.20363 1.21182 0.94616 0.93454 0.89891 1.22706 0.92011 0.98962 0.91513 1.20299 1.01635 0.94411 0.96453 1.20860 0.96960 0.93438 0.97366 1.21132 1.01066 1.01078 0.92918 1.17755 0.98985 0.90791 0.84041 1.91506 1.86811 1.82293 1.51194 1.21080 1.03270 0.92491 1.00032 1.20808 0.96780 1.00639 0.91696 0.90803 0.91211 0.90180 0.76773 0.91929 0.90018 0.95815 0.88078 0.93382 0.95782 0.91540 0.90791 0.91118 0.84875 0.84412 0.84434 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 8.10 37.16 0.30 -1.12 16 2 C 0.17 2.19 0.92 -92.93 -0.09 2.10 16 3 O -0.55 -6.69 11.81 -35.23 -0.42 -7.10 16 4 C 0.49 8.29 5.63 -10.99 -0.06 8.22 16 5 O -0.54 -10.59 15.40 5.56 0.09 -10.51 16 6 N -0.59 -10.16 2.94 -172.21 -0.51 -10.66 16 7 C 0.08 1.63 6.63 -3.37 -0.02 1.61 16 8 C 0.16 3.69 5.52 -3.36 -0.02 3.68 16 9 N -0.59 -13.87 2.97 -171.77 -0.51 -14.38 16 10 C -0.26 -6.71 9.58 -15.06 -0.14 -6.86 16 11 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 12 C 0.01 0.15 4.95 -17.43 -0.09 0.07 16 13 N -0.90 -25.26 11.13 55.49 0.62 -24.65 16 14 Si 0.91 20.91 29.58 -169.99 -5.03 15.88 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 18 C 0.14 2.60 6.67 -3.60 -0.02 2.58 16 19 C 0.07 1.11 4.88 -3.59 -0.02 1.10 16 20 C -0.13 -1.55 3.05 -104.61 -0.32 -1.86 16 21 C -0.07 -0.89 9.12 -39.59 -0.36 -1.25 16 22 C -0.14 -1.79 10.03 -39.52 -0.40 -2.18 16 23 C 0.10 1.26 7.30 -39.42 -0.29 0.97 16 24 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 25 C -0.15 -1.56 10.03 -39.52 -0.40 -1.95 16 26 C -0.08 -0.83 8.09 -39.59 -0.32 -1.15 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 30 H 0.38 3.95 5.41 45.56 0.25 4.20 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.08 1.60 6.99 -51.93 -0.36 1.24 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 2.60 5.98 -51.93 -0.31 2.29 16 35 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 38 H 0.07 0.93 2.48 -51.92 -0.13 0.80 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.13 1.87 7.51 -52.49 -0.39 1.48 16 41 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 42 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 43 H 0.14 1.16 7.05 -52.49 -0.37 0.79 16 LS Contribution 345.44 15.07 5.21 5.21 Total: -1.00 -30.36 345.44 -7.83 -38.20 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.08 Total: 5.83 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -2.24 Total: 3.94 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.40 Total: -49.69 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.33 Total: -17.61 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.36 -7.83 -38.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.223 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds