Wall clock time and date at job start Tue Mar 31 2020 12:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46748 * 2 1 4 4 C 1.50693 * 109.47352 * 120.00119 * 2 1 3 5 5 O 1.21282 * 119.99960 * 5.48307 * 4 2 1 6 6 N 1.34773 * 120.00211 * 185.47384 * 4 2 1 7 7 C 1.46963 * 120.59881 * 173.75638 * 6 4 2 8 8 C 1.53814 * 108.39720 * 124.76018 * 7 6 4 9 9 N 1.46970 * 108.57712 * 49.64571 * 8 7 6 10 10 C 1.36930 * 120.59625 * 124.62341 * 9 8 7 11 11 H 1.07997 * 120.00515 * 208.84489 * 10 9 8 12 12 C 1.38813 * 119.99863 * 28.84277 * 10 9 8 13 13 N 1.31615 * 120.00126 * 15.67342 * 12 10 9 14 14 Si 1.86804 * 119.99991 * 195.66663 * 12 10 9 15 15 H 1.48504 * 109.46804 * 90.00334 * 14 12 10 16 16 H 1.48500 * 109.47340 * 210.00124 * 14 12 10 17 17 H 1.48498 * 109.47345 * 330.00587 * 14 12 10 18 18 C 1.46962 * 118.80846 * 304.64039 * 9 8 7 19 19 C 1.46970 * 120.59362 * 354.04588 * 6 4 2 20 20 C 1.50698 * 109.46813 * 240.00289 * 2 1 3 21 21 C 1.38250 * 119.97849 * 283.34122 * 20 2 1 22 22 C 1.38192 * 120.02768 * 179.72879 * 21 20 2 23 23 C 1.38458 * 119.97480 * 0.52482 * 22 21 20 24 24 F 1.35101 * 120.02594 * 179.73133 * 23 22 21 25 25 C 1.38455 * 119.94938 * 359.74770 * 23 22 21 26 26 C 1.38195 * 119.97506 * 0.02562 * 25 23 22 27 27 H 1.09000 * 109.46938 * 299.99432 * 1 2 3 28 28 H 1.08999 * 109.47681 * 60.00156 * 1 2 3 29 29 H 1.09004 * 109.46933 * 180.02562 * 1 2 3 30 30 H 0.96702 * 113.99820 * 185.53921 * 3 2 1 31 31 H 1.08999 * 109.61312 * 244.55213 * 7 6 4 32 32 H 1.08999 * 109.60854 * 5.05706 * 7 6 4 33 33 H 1.08992 * 109.74504 * 289.85235 * 8 7 6 34 34 H 1.09000 * 109.52954 * 169.30644 * 8 7 6 35 35 H 0.97000 * 120.00000 * 179.97438 * 13 12 10 36 36 H 1.08997 * 109.61338 * 295.48524 * 18 9 8 37 37 H 1.09001 * 109.60771 * 174.97142 * 18 9 8 38 38 H 1.09008 * 109.60534 * 354.93941 * 19 6 4 39 39 H 1.08992 * 109.61298 * 115.45187 * 19 6 4 40 40 H 1.07999 * 119.97987 * 359.97438 * 21 20 2 41 41 H 1.08000 * 120.01094 * 180.25470 * 22 21 20 42 42 H 1.08004 * 120.01699 * 179.97438 * 25 23 22 43 43 H 1.07999 * 119.99270 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.2488 -1.2575 1.9772 6 7 3.3524 -0.7380 1.5008 7 6 3.8457 -1.3066 2.7631 8 6 4.8740 -2.4018 2.4331 9 7 5.8456 -1.8581 1.4738 10 6 7.1867 -1.8852 1.7490 11 1 7.8382 -1.1295 1.3357 12 6 7.7089 -2.8841 2.5592 13 7 7.0010 -3.9649 2.8105 14 14 9.4164 -2.6945 3.2927 15 1 9.3162 -2.0206 4.6122 16 1 10.0320 -4.0346 3.4668 17 1 10.2583 -1.8775 2.3823 18 6 5.3520 -1.2845 0.2140 19 6 4.3241 -0.1943 0.5415 20 6 2.0323 -0.7103 -1.2305 21 6 2.0020 -2.0912 -1.2918 22 6 2.4571 -2.7434 -2.4219 23 6 2.9537 -2.0139 -3.4888 24 9 3.4039 -2.6507 -4.5920 25 6 2.9888 -0.6313 -3.4242 26 6 2.5288 0.0190 -2.2949 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 2.9664 1.4251 -0.0853 31 1 4.3182 -0.5241 3.3569 32 1 3.0139 -1.7391 3.3192 33 1 4.3681 -3.2616 1.9940 34 1 5.3897 -2.7040 3.3446 35 1 7.3661 -4.6630 3.3764 36 1 4.8801 -2.0647 -0.3832 37 1 6.1834 -0.8487 -0.3400 38 1 3.8082 0.1079 -0.3700 39 1 4.8299 0.6655 0.9807 40 1 1.6188 -2.6601 -0.4576 41 1 2.4295 -3.8219 -2.4711 42 1 3.3763 -0.0612 -4.2556 43 1 2.5564 1.0974 -2.2440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933236221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:54 Heat of formation + Delta-G solvation = -78.675813 kcal Electronic energy + Delta-G solvation = -28932.850951 eV Core-core repulsion = 24893.177324 eV Total energy + Delta-G solvation = -4039.673627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.93567 -42.23958 -39.88955 -38.61518 -37.85106 -35.65726 -33.28259 -33.09522 -32.14179 -31.97180 -30.14420 -28.86981 -26.18310 -25.11694 -24.34392 -24.12314 -23.10272 -21.73550 -20.68831 -19.11169 -19.04921 -18.28255 -18.03827 -17.33512 -17.16083 -16.75469 -16.62844 -16.08791 -15.75231 -15.55370 -15.50222 -15.23960 -15.03431 -14.86390 -14.62965 -14.26248 -14.05790 -13.96824 -13.54284 -13.38588 -13.26005 -13.13215 -13.01570 -12.83513 -12.66708 -12.51166 -12.32886 -12.07283 -12.05815 -12.00920 -11.89160 -11.67789 -10.71975 -10.61272 -10.13878 -9.90509 -9.61220 -8.68279 -7.89640 -5.39922 -0.03096 0.18484 1.35631 1.48381 1.49809 1.58017 1.87488 2.45177 2.49912 3.00213 3.14873 3.23957 3.26095 3.40886 3.52845 3.73979 3.88901 3.96221 4.11201 4.15752 4.22774 4.29842 4.36380 4.41001 4.59784 4.70705 4.71986 4.73044 4.83870 4.86857 4.90328 4.99964 5.09174 5.13656 5.16445 5.18445 5.31787 5.40673 5.58123 5.64462 5.80428 6.32447 6.33797 6.38127 6.97368 7.07993 7.76600 8.29964 9.15575 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013275 B = 0.004765 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.699161 B = 5874.448897 C = 7069.422949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.177 3.823 3 O -0.539 6.539 4 C 0.488 3.512 5 O -0.574 6.574 6 N -0.592 5.592 7 C 0.098 3.902 8 C 0.172 3.828 9 N -0.605 5.605 10 C -0.262 4.262 11 H 0.077 0.923 12 C -0.049 4.049 13 N -0.937 5.937 14 Si 0.969 3.031 15 H -0.285 1.285 16 H -0.300 1.300 17 H -0.265 1.265 18 C 0.133 3.867 19 C 0.084 3.916 20 C -0.132 4.132 21 C -0.082 4.082 22 C -0.155 4.155 23 C 0.091 3.909 24 F -0.146 7.146 25 C -0.138 4.138 26 C -0.070 4.070 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.389 0.611 31 H 0.071 0.929 32 H 0.075 0.925 33 H -0.009 1.009 34 H 0.071 0.929 35 H 0.250 0.750 36 H 0.010 0.990 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.137 0.863 42 H 0.168 0.832 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 11.232 -12.007 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.133 3.867 3 O -0.350 6.350 4 C 0.276 3.724 5 O -0.454 6.454 6 N -0.324 5.324 7 C -0.026 4.026 8 C 0.045 3.955 9 N -0.328 5.328 10 C -0.391 4.391 11 H 0.095 0.905 12 C -0.244 4.244 13 N -0.583 5.583 14 Si 0.797 3.203 15 H -0.212 1.212 16 H -0.227 1.227 17 H -0.189 1.189 18 C 0.007 3.993 19 C -0.039 4.039 20 C -0.133 4.133 21 C -0.100 4.100 22 C -0.174 4.174 23 C 0.072 3.928 24 F -0.124 7.124 25 C -0.156 4.156 26 C -0.087 4.087 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.092 0.908 30 H 0.243 0.757 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.009 0.991 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.028 0.972 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.107 0.893 40 H 0.131 0.869 41 H 0.155 0.845 42 H 0.186 0.814 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -10.829 10.928 -11.524 19.222 hybrid contribution 1.643 -1.310 0.605 2.187 sum -9.186 9.617 -10.919 17.207 Atomic orbital electron populations 1.21597 0.88305 1.03555 1.04077 1.20081 0.97253 0.81798 0.87579 1.86650 1.29444 1.22998 1.95893 1.21837 0.81954 0.80463 0.88131 1.90648 1.55797 1.47405 1.51536 1.48125 1.05685 1.58820 1.19759 1.22278 0.97391 0.97399 0.85525 1.20941 0.88720 0.91133 0.94665 1.44189 1.02444 1.70416 1.15759 1.19571 0.84624 1.06736 1.28205 0.90535 1.25856 1.01402 0.94431 1.02734 1.70163 1.39556 1.07714 1.40892 0.85245 0.79984 0.76375 0.78692 1.21191 1.22689 1.18903 1.21337 0.95938 0.93973 0.88047 1.22696 0.90951 0.97704 0.92585 1.20239 1.02417 0.93854 0.96782 1.20743 0.98050 0.94151 0.97084 1.21184 1.01571 1.01387 0.93240 1.17969 0.99336 0.91771 0.83691 1.91492 1.86931 1.82615 1.51398 1.21413 1.01829 0.91603 1.00788 1.21109 0.95133 1.01981 0.90501 0.91578 0.88647 0.90790 0.75689 0.91089 0.90645 0.99125 0.91103 0.94085 0.97152 0.90239 0.87487 0.89294 0.86930 0.84512 0.81428 0.80966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 8.10 71.98 0.58 -2.05 16 2 C 0.18 4.27 0.92 -12.29 -0.01 4.26 16 3 O -0.54 -10.97 11.81 -148.98 -1.76 -12.73 16 4 C 0.49 16.02 5.63 87.66 0.49 16.51 16 5 O -0.57 -22.68 15.40 -3.04 -0.05 -22.73 16 6 N -0.59 -19.91 2.94 -817.15 -2.40 -22.31 16 7 C 0.10 3.88 6.63 86.57 0.57 4.45 16 8 C 0.17 8.27 5.52 86.56 0.48 8.75 16 9 N -0.60 -28.59 2.97 -697.35 -2.07 -30.65 16 10 C -0.26 -13.49 9.58 84.03 0.81 -12.68 16 11 H 0.08 3.75 7.88 -2.91 -0.02 3.72 16 12 C -0.05 -2.62 4.95 84.86 0.42 -2.20 16 13 N -0.94 -54.43 11.13 21.65 0.24 -54.19 16 14 Si 0.97 43.25 29.58 68.60 2.03 45.28 16 15 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 16 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 17 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 18 C 0.13 4.92 6.67 86.42 0.58 5.50 16 19 C 0.08 2.36 4.88 86.42 0.42 2.78 16 20 C -0.13 -2.89 3.05 -19.86 -0.06 -2.95 16 21 C -0.08 -2.12 9.12 22.26 0.20 -1.91 16 22 C -0.16 -3.83 10.03 22.31 0.22 -3.60 16 23 C 0.09 2.06 7.30 22.37 0.16 2.22 16 24 F -0.15 -3.54 17.27 44.97 0.78 -2.76 16 25 C -0.14 -2.32 10.03 22.31 0.22 -2.10 16 26 C -0.07 -1.12 8.09 22.26 0.18 -0.94 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 1.73 8.04 -2.38 -0.02 1.71 16 30 H 0.39 6.15 5.41 -74.06 -0.40 5.75 16 31 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.08 3.06 6.99 -2.39 -0.02 3.04 16 33 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.07 3.83 5.98 -2.39 -0.01 3.82 16 35 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 36 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.08 2.72 7.93 -2.39 -0.02 2.70 16 38 H 0.11 2.28 2.48 -2.38 -0.01 2.27 16 39 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.11 3.33 7.51 -2.91 -0.02 3.31 16 41 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 42 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 43 H 0.17 1.75 7.05 -2.91 -0.02 1.73 16 Total: -1.00 -67.60 345.44 2.69 -64.91 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.65 Total: 19.15 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 5.27 Total: 16.03 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -4.23 Total: -107.16 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -1.81 Total: -35.45 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -67.60 2.69 -64.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.761 kcal (2) G-P(sol) polarization free energy of solvation -67.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds