Wall clock time and date at job start Tue Mar 31 2020 12:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.46854 * 2 1 4 4 C 1.50694 * 109.47295 * 240.00111 * 2 1 3 5 5 O 1.21284 * 120.00013 * 255.50989 * 4 2 1 6 6 N 1.34779 * 120.00221 * 75.50918 * 4 2 1 7 7 C 1.46962 * 120.59327 * 354.11958 * 6 4 2 8 8 C 1.53811 * 108.39598 * 124.75848 * 7 6 4 9 9 N 1.46955 * 108.57980 * 49.63912 * 8 7 6 10 10 C 1.36945 * 120.59579 * 124.62183 * 9 8 7 11 11 H 1.08000 * 120.00077 * 208.64570 * 10 9 8 12 12 C 1.38813 * 119.99605 * 28.64566 * 10 9 8 13 13 N 1.31620 * 120.00254 * 16.64070 * 12 10 9 14 14 Si 1.86801 * 119.99713 * 196.64120 * 12 10 9 15 15 H 1.48500 * 109.47200 * 89.99778 * 14 12 10 16 16 H 1.48499 * 109.47023 * 209.99878 * 14 12 10 17 17 H 1.48500 * 109.47222 * 329.99669 * 14 12 10 18 18 C 1.46961 * 118.81668 * 304.64590 * 9 8 7 19 19 C 1.46961 * 120.59175 * 174.40168 * 6 4 2 20 20 C 1.50697 * 109.47305 * 119.99681 * 2 1 3 21 21 C 1.38243 * 119.97559 * 52.62500 * 20 2 1 22 22 C 1.38192 * 120.02756 * 180.23392 * 21 20 2 23 23 C 1.38463 * 119.97618 * 359.50979 * 22 21 20 24 24 F 1.35095 * 120.02893 * 180.20925 * 23 22 21 25 25 C 1.38464 * 119.94286 * 0.48884 * 23 22 21 26 26 C 1.38191 * 119.97453 * 359.74682 * 25 23 22 27 27 H 1.08998 * 109.46933 * 305.33821 * 1 2 3 28 28 H 1.08996 * 109.47153 * 65.34355 * 1 2 3 29 29 H 1.09006 * 109.46616 * 185.34066 * 1 2 3 30 30 H 0.96703 * 113.99930 * 180.02562 * 3 2 1 31 31 H 1.08991 * 109.60960 * 244.54541 * 7 6 4 32 32 H 1.09009 * 109.60972 * 5.05512 * 7 6 4 33 33 H 1.08998 * 109.74284 * 289.84821 * 8 7 6 34 34 H 1.08999 * 109.67107 * 169.38871 * 8 7 6 35 35 H 0.96995 * 119.99601 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.60905 * 295.48633 * 18 9 8 37 37 H 1.08996 * 109.75670 * 175.05466 * 18 9 8 38 38 H 1.09000 * 109.61492 * 354.94928 * 19 6 4 39 39 H 1.09007 * 109.61068 * 115.29192 * 19 6 4 40 40 H 1.08006 * 119.98500 * 359.95255 * 21 20 2 41 41 H 1.08005 * 120.01434 * 179.71847 * 22 21 20 42 42 H 1.08003 * 120.00834 * 179.71862 * 25 23 22 43 43 H 1.08003 * 119.98610 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.4823 -1.8331 -1.1412 6 7 1.9817 -0.0980 -2.4300 7 6 1.3235 1.2078 -2.5760 8 6 2.3289 2.1912 -3.1988 9 7 2.9254 1.5622 -4.3855 10 6 2.8730 2.1839 -5.6046 11 1 2.8686 1.5962 -6.5107 12 6 2.8257 3.5694 -5.6755 13 7 3.1561 4.2937 -4.6275 14 14 2.2931 4.4058 -7.2586 15 1 0.8215 4.6042 -7.2428 16 1 2.9691 5.7229 -7.3742 17 1 2.6654 3.5550 -8.4175 18 6 3.5786 0.2537 -4.2407 19 6 2.5782 -0.7272 -3.6167 20 6 2.0324 -0.7103 1.2305 21 6 1.5773 -1.9812 1.5285 22 6 2.0336 -2.6316 2.6592 23 6 2.9547 -2.0141 3.4883 24 9 3.4046 -2.6507 4.5916 25 6 3.4098 -0.7411 3.1887 26 6 2.9483 -0.0908 2.0601 27 1 -0.3633 0.5944 0.8383 28 1 -0.3633 0.4287 -0.9339 29 1 -0.3633 -1.0233 0.0957 30 1 2.9703 1.4237 -0.0004 31 1 0.4541 1.1087 -3.2258 32 1 1.0119 1.5720 -1.5969 33 1 3.1110 2.4249 -2.4766 34 1 1.8143 3.1069 -3.4899 35 1 3.1227 5.2618 -4.6770 36 1 4.4497 0.3494 -3.5926 37 1 3.8891 -0.1133 -5.2190 38 1 3.0954 -1.6413 -3.3252 39 1 1.7957 -0.9636 -4.3378 40 1 0.8614 -2.4641 0.8799 41 1 1.6744 -3.6227 2.8943 42 1 4.1248 -0.2566 3.8372 43 1 3.3035 0.9020 1.8261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933236222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:58 Heat of formation + Delta-G solvation = -60.648518 kcal Electronic energy + Delta-G solvation = -28152.039441 eV Core-core repulsion = 24113.147536 eV Total energy + Delta-G solvation = -4038.891905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.03008 -40.80910 -38.83644 -36.85887 -36.72978 -33.84958 -32.41915 -31.35165 -31.13412 -30.16726 -29.12605 -27.05567 -24.74693 -23.50446 -23.10168 -22.94870 -21.81232 -20.30102 -18.97486 -18.45315 -17.64673 -16.78875 -16.43326 -16.21620 -15.71880 -15.60992 -15.10268 -14.76987 -14.74318 -14.11151 -13.92350 -13.78936 -13.67575 -13.44174 -13.40406 -13.16443 -13.01396 -12.51992 -12.47867 -12.25225 -12.19045 -11.75238 -11.57887 -11.38967 -11.12598 -10.91748 -10.80478 -10.62032 -10.51172 -10.23740 -9.97733 -9.85902 -9.26797 -9.12310 -8.70728 -8.61561 -8.29036 -6.73198 -5.87721 -3.32965 0.94735 1.11482 2.72440 3.19142 3.32480 3.39995 3.40810 3.54591 3.97789 4.11808 4.37937 4.42071 4.53381 4.64467 4.73536 4.95648 5.13293 5.27524 5.28740 5.35905 5.52209 5.56574 5.72978 5.79721 5.81131 5.86542 5.92632 5.94989 5.97656 6.08704 6.12190 6.21312 6.32174 6.40353 6.45003 6.71161 6.72936 6.88727 7.17879 7.35706 7.48932 7.69691 7.84950 8.34221 8.40058 9.10404 9.72313 10.29163 11.19591 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027977 B = 0.003099 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.585008 B = 9034.127171 C = 9271.485414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.164 3.836 3 O -0.532 6.532 4 C 0.485 3.515 5 O -0.548 6.548 6 N -0.581 5.581 7 C 0.063 3.937 8 C 0.163 3.837 9 N -0.592 5.592 10 C -0.257 4.257 11 H 0.067 0.933 12 C 0.004 3.996 13 N -0.901 5.901 14 Si 0.904 3.096 15 H -0.287 1.287 16 H -0.291 1.291 17 H -0.279 1.279 18 C 0.133 3.867 19 C 0.092 3.908 20 C -0.106 4.106 21 C -0.051 4.051 22 C -0.156 4.156 23 C 0.097 3.903 24 F -0.143 7.143 25 C -0.155 4.155 26 C -0.078 4.078 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.384 0.616 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.024 0.976 34 H 0.099 0.901 35 H 0.255 0.745 36 H 0.022 0.978 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.506 -8.871 13.741 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.120 3.880 3 O -0.339 6.339 4 C 0.271 3.729 5 O -0.427 6.427 6 N -0.312 5.312 7 C -0.060 4.060 8 C 0.036 3.964 9 N -0.315 5.315 10 C -0.386 4.386 11 H 0.084 0.916 12 C -0.195 4.195 13 N -0.545 5.545 14 Si 0.734 3.266 15 H -0.213 1.213 16 H -0.217 1.217 17 H -0.204 1.204 18 C 0.006 3.994 19 C -0.032 4.032 20 C -0.107 4.107 21 C -0.069 4.069 22 C -0.175 4.175 23 C 0.078 3.922 24 F -0.121 7.121 25 C -0.174 4.174 26 C -0.096 4.096 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.234 0.766 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.042 0.958 34 H 0.117 0.883 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.857 -9.141 13.789 17.242 hybrid contribution 0.515 0.297 -0.687 0.908 sum -4.342 -8.844 13.102 16.393 Atomic orbital electron populations 1.21949 0.90003 1.03342 1.04527 1.20058 0.96455 0.82129 0.89384 1.86609 1.27763 1.23385 1.96180 1.21053 0.79920 0.86737 0.85237 1.90670 1.47290 1.18827 1.85931 1.48069 1.54613 1.21169 1.07373 1.23226 0.96973 0.83057 1.02778 1.21209 0.93211 0.94480 0.87452 1.44031 1.63137 1.17970 1.06382 1.19212 1.45810 0.89034 0.84560 0.91563 1.25075 1.00231 0.96787 0.97369 1.70002 1.49822 1.05009 1.29658 0.86261 0.78413 0.78855 0.83045 1.21345 1.21715 1.20429 1.21267 0.92636 0.87147 0.98374 1.22268 0.97610 0.96975 0.86311 1.20077 0.98580 0.95541 0.96534 1.20756 0.98271 0.93166 0.94697 1.21092 0.99156 1.01361 0.95885 1.17751 0.97306 0.92069 0.85116 1.91486 1.87938 1.81784 1.50933 1.21053 1.02780 0.94024 0.99528 1.20810 0.95402 1.00065 0.93339 0.90256 0.90336 0.90586 0.76626 0.92524 0.87621 0.95829 0.88339 0.93478 0.96050 0.91579 0.90195 0.91891 0.84946 0.84729 0.84651 0.84506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.31 37.16 0.31 -1.24 16 2 C 0.16 2.11 0.79 -92.93 -0.07 2.04 16 3 O -0.53 -6.74 9.40 -35.23 -0.33 -7.07 16 4 C 0.48 7.82 6.60 -10.99 -0.07 7.75 16 5 O -0.55 -10.12 14.69 5.55 0.08 -10.04 16 6 N -0.58 -9.97 2.94 -172.21 -0.51 -10.48 16 7 C 0.06 1.10 5.10 -3.37 -0.02 1.08 16 8 C 0.16 3.57 5.53 -3.37 -0.02 3.55 16 9 N -0.59 -14.06 2.97 -171.77 -0.51 -14.57 16 10 C -0.26 -6.72 9.58 -15.06 -0.14 -6.86 16 11 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 12 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 13 N -0.90 -24.86 11.17 55.49 0.62 -24.24 16 14 Si 0.90 20.87 29.59 -169.99 -5.03 15.84 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 18 C 0.13 2.71 6.67 -3.60 -0.02 2.68 16 19 C 0.09 1.65 6.58 -3.60 -0.02 1.63 16 20 C -0.11 -1.31 4.46 -104.62 -0.47 -1.78 16 21 C -0.05 -0.60 7.99 -39.60 -0.32 -0.92 16 22 C -0.16 -1.75 10.03 -39.52 -0.40 -2.14 16 23 C 0.10 1.13 7.30 -39.42 -0.29 0.84 16 24 F -0.14 -1.70 17.27 2.25 0.04 -1.67 16 25 C -0.16 -1.68 10.03 -39.52 -0.40 -2.08 16 26 C -0.08 -0.87 9.24 -39.60 -0.37 -1.24 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.89 6.22 -51.93 -0.32 0.57 16 29 H 0.08 0.75 6.81 -51.93 -0.35 0.39 16 30 H 0.38 4.31 7.75 45.56 0.35 4.67 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.11 1.64 3.71 -51.92 -0.19 1.45 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 2.43 5.98 -51.93 -0.31 2.12 16 35 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 1.30 7.94 -51.93 -0.41 0.88 16 38 H 0.08 1.40 7.02 -51.93 -0.36 1.03 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.13 1.48 7.08 -52.48 -0.37 1.11 16 41 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 42 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 43 H 0.14 1.28 6.43 -52.48 -0.34 0.94 16 LS Contribution 344.43 15.07 5.19 5.19 Total: -1.00 -30.29 344.43 -7.64 -37.93 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.82 Total: 5.77 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -2.38 Total: 3.34 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.40 Total: -49.29 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.25 Total: -17.11 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.29 -7.64 -37.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.717 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds