Wall clock time and date at job start Tue Mar 31 2020 12:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.46854 * 2 1 4 4 C 1.50694 * 109.47295 * 240.00111 * 2 1 3 5 5 O 1.21284 * 120.00013 * 255.50989 * 4 2 1 6 6 N 1.34779 * 120.00221 * 75.50918 * 4 2 1 7 7 C 1.46962 * 120.59327 * 354.11958 * 6 4 2 8 8 C 1.53811 * 108.39598 * 124.75848 * 7 6 4 9 9 N 1.46955 * 108.57980 * 49.63912 * 8 7 6 10 10 C 1.36945 * 120.59579 * 124.62183 * 9 8 7 11 11 H 1.08000 * 120.00077 * 208.64570 * 10 9 8 12 12 C 1.38813 * 119.99605 * 28.64566 * 10 9 8 13 13 N 1.31620 * 120.00254 * 16.64070 * 12 10 9 14 14 Si 1.86801 * 119.99713 * 196.64120 * 12 10 9 15 15 H 1.48500 * 109.47200 * 89.99778 * 14 12 10 16 16 H 1.48499 * 109.47023 * 209.99878 * 14 12 10 17 17 H 1.48500 * 109.47222 * 329.99669 * 14 12 10 18 18 C 1.46961 * 118.81668 * 304.64590 * 9 8 7 19 19 C 1.46961 * 120.59175 * 174.40168 * 6 4 2 20 20 C 1.50697 * 109.47305 * 119.99681 * 2 1 3 21 21 C 1.38243 * 119.97559 * 52.62500 * 20 2 1 22 22 C 1.38192 * 120.02756 * 180.23392 * 21 20 2 23 23 C 1.38463 * 119.97618 * 359.50979 * 22 21 20 24 24 F 1.35095 * 120.02893 * 180.20925 * 23 22 21 25 25 C 1.38464 * 119.94286 * 0.48884 * 23 22 21 26 26 C 1.38191 * 119.97453 * 359.74682 * 25 23 22 27 27 H 1.08998 * 109.46933 * 305.33821 * 1 2 3 28 28 H 1.08996 * 109.47153 * 65.34355 * 1 2 3 29 29 H 1.09006 * 109.46616 * 185.34066 * 1 2 3 30 30 H 0.96703 * 113.99930 * 180.02562 * 3 2 1 31 31 H 1.08991 * 109.60960 * 244.54541 * 7 6 4 32 32 H 1.09009 * 109.60972 * 5.05512 * 7 6 4 33 33 H 1.08998 * 109.74284 * 289.84821 * 8 7 6 34 34 H 1.08999 * 109.67107 * 169.38871 * 8 7 6 35 35 H 0.96995 * 119.99601 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.60905 * 295.48633 * 18 9 8 37 37 H 1.08996 * 109.75670 * 175.05466 * 18 9 8 38 38 H 1.09000 * 109.61492 * 354.94928 * 19 6 4 39 39 H 1.09007 * 109.61068 * 115.29192 * 19 6 4 40 40 H 1.08006 * 119.98500 * 359.95255 * 21 20 2 41 41 H 1.08005 * 120.01434 * 179.71847 * 22 21 20 42 42 H 1.08003 * 120.00834 * 179.71862 * 25 23 22 43 43 H 1.08003 * 119.98610 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.4823 -1.8331 -1.1412 6 7 1.9817 -0.0980 -2.4300 7 6 1.3235 1.2078 -2.5760 8 6 2.3289 2.1912 -3.1988 9 7 2.9254 1.5622 -4.3855 10 6 2.8730 2.1839 -5.6046 11 1 2.8686 1.5962 -6.5107 12 6 2.8257 3.5694 -5.6755 13 7 3.1561 4.2937 -4.6275 14 14 2.2931 4.4058 -7.2586 15 1 0.8215 4.6042 -7.2428 16 1 2.9691 5.7229 -7.3742 17 1 2.6654 3.5550 -8.4175 18 6 3.5786 0.2537 -4.2407 19 6 2.5782 -0.7272 -3.6167 20 6 2.0324 -0.7103 1.2305 21 6 1.5773 -1.9812 1.5285 22 6 2.0336 -2.6316 2.6592 23 6 2.9547 -2.0141 3.4883 24 9 3.4046 -2.6507 4.5916 25 6 3.4098 -0.7411 3.1887 26 6 2.9483 -0.0908 2.0601 27 1 -0.3633 0.5944 0.8383 28 1 -0.3633 0.4287 -0.9339 29 1 -0.3633 -1.0233 0.0957 30 1 2.9703 1.4237 -0.0004 31 1 0.4541 1.1087 -3.2258 32 1 1.0119 1.5720 -1.5969 33 1 3.1110 2.4249 -2.4766 34 1 1.8143 3.1069 -3.4899 35 1 3.1227 5.2618 -4.6770 36 1 4.4497 0.3494 -3.5926 37 1 3.8891 -0.1133 -5.2190 38 1 3.0954 -1.6413 -3.3252 39 1 1.7957 -0.9636 -4.3378 40 1 0.8614 -2.4641 0.8799 41 1 1.6744 -3.6227 2.8943 42 1 4.1248 -0.2566 3.8372 43 1 3.3035 0.9020 1.8261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933236222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:58 Heat of formation + Delta-G solvation = -79.139900 kcal Electronic energy + Delta-G solvation = -28152.841288 eV Core-core repulsion = 24113.147536 eV Total energy + Delta-G solvation = -4039.693751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.92580 -41.96009 -39.94532 -38.36691 -37.83708 -35.53775 -33.45065 -33.05516 -31.99191 -31.78864 -30.08442 -28.71107 -26.12169 -24.88597 -24.50961 -23.96060 -23.06987 -21.64155 -20.35812 -19.58115 -18.77160 -18.21443 -17.58798 -17.30578 -17.10074 -16.61416 -16.56421 -16.34641 -15.66417 -15.45327 -15.39807 -15.26082 -15.03492 -14.81671 -14.63721 -14.17443 -14.10058 -13.68833 -13.49928 -13.36358 -13.26672 -13.16790 -12.96974 -12.82655 -12.64749 -12.41865 -12.20893 -12.07017 -11.97343 -11.93698 -11.67830 -11.49184 -10.59410 -10.42217 -10.06173 -9.82863 -9.61123 -8.62508 -7.86427 -5.35006 0.04914 0.26934 1.43981 1.50179 1.51400 1.59334 1.95800 2.51825 2.58578 3.01759 3.23971 3.28037 3.39283 3.43897 3.66046 3.73429 3.93420 4.04402 4.26352 4.28042 4.30041 4.43324 4.46986 4.57378 4.66239 4.71634 4.76161 4.82899 4.88552 4.92213 4.94808 5.07423 5.11220 5.14164 5.22557 5.29893 5.44903 5.56317 5.63791 5.70608 5.86583 6.32407 6.38382 6.52321 7.07993 7.14062 7.81531 8.34273 9.17868 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027977 B = 0.003099 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.585008 B = 9034.127171 C = 9271.485414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.172 3.828 3 O -0.535 6.535 4 C 0.487 3.513 5 O -0.569 6.569 6 N -0.587 5.587 7 C 0.084 3.916 8 C 0.170 3.830 9 N -0.610 5.610 10 C -0.267 4.267 11 H 0.066 0.934 12 C -0.043 4.043 13 N -0.929 5.929 14 Si 0.966 3.034 15 H -0.283 1.283 16 H -0.296 1.296 17 H -0.272 1.272 18 C 0.134 3.866 19 C 0.102 3.898 20 C -0.119 4.119 21 C -0.060 4.060 22 C -0.158 4.158 23 C 0.084 3.916 24 F -0.146 7.146 25 C -0.156 4.156 26 C -0.083 4.083 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.389 0.611 31 H 0.057 0.943 32 H 0.129 0.871 33 H 0.007 0.993 34 H 0.069 0.931 35 H 0.252 0.748 36 H 0.011 0.989 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.138 0.862 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.344 -9.454 14.373 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.128 3.872 3 O -0.343 6.343 4 C 0.274 3.726 5 O -0.449 6.449 6 N -0.318 5.318 7 C -0.039 4.039 8 C 0.044 3.956 9 N -0.333 5.333 10 C -0.397 4.397 11 H 0.084 0.916 12 C -0.240 4.240 13 N -0.574 5.574 14 Si 0.794 3.206 15 H -0.210 1.210 16 H -0.223 1.223 17 H -0.197 1.197 18 C 0.007 3.993 19 C -0.022 4.022 20 C -0.120 4.120 21 C -0.078 4.078 22 C -0.177 4.177 23 C 0.065 3.935 24 F -0.125 7.125 25 C -0.174 4.174 26 C -0.100 4.100 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.241 0.759 31 H 0.075 0.925 32 H 0.146 0.854 33 H 0.025 0.975 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.155 0.845 41 H 0.170 0.830 42 H 0.172 0.828 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.697 -9.751 14.434 18.327 hybrid contribution 0.854 0.419 -0.842 1.270 sum -4.844 -9.332 13.592 17.184 Atomic orbital electron populations 1.22012 0.88420 1.04497 1.04955 1.20015 0.97519 0.81758 0.87905 1.86586 1.28457 1.23299 1.95996 1.21662 0.78883 0.86487 0.85564 1.90658 1.48038 1.19967 1.86252 1.48088 1.54940 1.21018 1.07744 1.22950 0.95279 0.82134 1.03529 1.21030 0.93283 0.94606 0.86696 1.44282 1.63953 1.18891 1.06207 1.19492 1.45156 0.89439 0.85587 0.91625 1.25758 1.00723 0.97351 1.00128 1.70141 1.51099 1.04821 1.31357 0.85294 0.77859 0.77433 0.79968 1.20954 1.22313 1.19705 1.21324 0.92870 0.86373 0.98706 1.22058 0.97137 0.96237 0.86756 1.20126 0.99371 0.95942 0.96562 1.20879 0.98626 0.93192 0.95078 1.21297 0.98809 1.02100 0.95476 1.17965 0.97743 0.92565 0.85241 1.91476 1.88021 1.81899 1.51121 1.21299 1.02754 0.93776 0.99586 1.21026 0.95003 1.00792 0.93220 0.88755 0.90723 0.89376 0.75939 0.92479 0.85368 0.97536 0.91258 0.93924 0.97109 0.91196 0.89588 0.91361 0.84459 0.83026 0.82764 0.82966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.31 71.98 0.60 -2.18 16 2 C 0.17 4.10 0.79 -12.29 -0.01 4.09 16 3 O -0.54 -12.61 9.40 -148.98 -1.40 -14.01 16 4 C 0.49 14.93 6.60 87.65 0.58 15.51 16 5 O -0.57 -20.18 14.69 -3.04 -0.04 -20.23 16 6 N -0.59 -19.41 2.94 -817.15 -2.40 -21.81 16 7 C 0.08 2.86 5.10 86.56 0.44 3.30 16 8 C 0.17 7.51 5.53 86.57 0.48 7.99 16 9 N -0.61 -29.10 2.97 -697.37 -2.07 -31.17 16 10 C -0.27 -14.01 9.58 84.03 0.81 -13.21 16 11 H 0.07 3.38 7.88 -2.91 -0.02 3.36 16 12 C -0.04 -2.31 4.92 84.86 0.42 -1.90 16 13 N -0.93 -52.06 11.17 21.65 0.24 -51.82 16 14 Si 0.97 43.02 29.59 68.60 2.03 45.05 16 15 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 16 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 18 C 0.13 5.43 6.67 86.42 0.58 6.00 16 19 C 0.10 3.55 6.58 86.42 0.57 4.12 16 20 C -0.12 -2.71 4.46 -19.86 -0.09 -2.80 16 21 C -0.06 -1.31 7.99 22.26 0.18 -1.13 16 22 C -0.16 -3.26 10.03 22.31 0.22 -3.04 16 23 C 0.08 1.82 7.30 22.38 0.16 1.98 16 24 F -0.15 -3.29 17.27 44.97 0.78 -2.51 16 25 C -0.16 -3.07 10.03 22.31 0.22 -2.85 16 26 C -0.08 -1.68 9.24 22.26 0.21 -1.48 16 27 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.52 6.22 -2.39 -0.01 1.51 16 29 H 0.09 1.51 6.81 -2.38 -0.02 1.49 16 30 H 0.39 8.21 7.75 -74.06 -0.57 7.64 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.13 3.78 3.71 -2.38 -0.01 3.77 16 33 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.07 3.49 5.98 -2.39 -0.01 3.47 16 35 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 36 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.07 2.73 7.94 -2.39 -0.02 2.71 16 38 H 0.09 2.90 7.02 -2.39 -0.02 2.89 16 39 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.14 2.81 7.08 -2.91 -0.02 2.79 16 41 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 42 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 43 H 0.15 2.52 6.43 -2.91 -0.02 2.50 16 Total: -1.00 -63.97 344.43 2.97 -60.99 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.48 Total: 21.08 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 5.36 Total: 14.42 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -4.23 Total: -104.80 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -1.44 Total: -34.24 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.78 Total: -2.51 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -63.97 2.97 -60.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.146 kcal (2) G-P(sol) polarization free energy of solvation -63.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds