Wall clock time and date at job start Tue Mar 31 2020 13:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46652 * 2 1 4 4 C 1.52996 * 109.47020 * 119.99876 * 2 1 3 5 5 C 1.50701 * 109.47153 * 175.00346 * 4 2 1 6 6 N 1.29379 * 124.70031 * 89.97641 * 5 4 2 7 7 C 1.30941 * 117.46038 * 180.02562 * 6 5 4 8 8 C 1.36773 * 113.92652 * 359.97438 * 7 6 5 9 9 C 1.46564 * 126.17898 * 179.97438 * 8 7 6 10 10 O 1.21724 * 119.99877 * 115.72205 * 9 8 7 11 11 N 1.34775 * 120.00288 * 295.71925 * 9 8 7 12 12 C 1.36891 * 120.00003 * 227.63683 * 11 9 8 13 13 H 1.08005 * 120.00280 * 12.52272 * 12 11 9 14 14 C 1.39008 * 119.99790 * 192.53044 * 12 11 9 15 15 N 1.31400 * 120.00295 * 310.37565 * 14 12 11 16 16 Si 1.86807 * 120.00135 * 130.37555 * 14 12 11 17 17 H 1.48499 * 109.46859 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47097 * 119.99745 * 16 14 12 19 19 H 1.48502 * 109.47058 * 239.99955 * 16 14 12 20 20 C 1.46500 * 119.99736 * 47.63103 * 11 9 8 21 21 C 1.54965 * 110.92450 * 297.38564 * 20 11 9 22 22 C 1.54269 * 104.15727 * 156.29526 * 21 20 11 23 23 C 1.53873 * 106.64165 * 336.45107 * 22 21 20 24 24 C 1.54268 * 106.60082 * 359.97376 * 23 22 21 25 25 S 1.70917 * 124.70043 * 270.27056 * 5 4 2 26 26 H 1.08996 * 109.47757 * 300.00109 * 1 2 3 27 27 H 1.09001 * 109.46751 * 60.00399 * 1 2 3 28 28 H 1.09003 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47306 * 239.99926 * 2 1 3 30 30 H 1.08996 * 109.46786 * 60.00401 * 3 2 1 31 31 H 1.09002 * 109.46690 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46924 * 299.99530 * 3 2 1 33 33 H 1.09005 * 109.47058 * 54.99957 * 4 2 1 34 34 H 1.09004 * 109.47068 * 295.00190 * 4 2 1 35 35 H 1.08008 * 123.03502 * 180.02562 * 7 6 5 36 36 H 0.96995 * 120.00194 * 180.02562 * 15 14 12 37 37 H 1.09002 * 110.66874 * 174.08638 * 20 11 9 38 38 H 1.08998 * 110.47435 * 37.64667 * 21 20 11 39 39 H 1.08997 * 110.53257 * 274.97807 * 21 20 11 40 40 H 1.08993 * 110.03406 * 217.13800 * 22 21 20 41 41 H 1.09001 * 110.02657 * 95.75799 * 22 21 20 42 42 H 1.09000 * 110.03064 * 119.25703 * 23 22 21 43 43 H 1.09001 * 110.02950 * 240.63951 * 23 22 21 44 44 H 1.08994 * 110.48459 * 142.28469 * 24 23 22 45 45 H 1.08994 * 110.48336 * 264.80287 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8293 1.1889 6 7 4.3633 0.0512 1.6622 7 6 5.6443 -0.1865 1.5317 8 6 5.9282 -1.3643 0.8970 9 6 7.2650 -1.8920 0.6097 10 8 7.6345 -2.9290 1.1291 11 7 8.0851 -1.2292 -0.2297 12 6 8.7380 -1.9055 -1.2248 13 1 8.4496 -2.9172 -1.4694 14 6 9.7722 -1.2902 -1.9205 15 7 9.6022 -0.0880 -2.4228 16 14 11.4040 -2.1724 -2.1413 17 1 11.3398 -3.5033 -1.4858 18 1 11.6805 -2.3464 -3.5899 19 1 12.4889 -1.3686 -1.5233 20 6 8.2778 0.2150 -0.0770 21 6 6.9462 0.9771 -0.2949 22 6 7.1426 2.3049 0.4655 23 6 8.2191 2.0458 1.5340 24 6 8.6397 0.5688 1.3868 25 16 4.3963 -2.1286 0.4796 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6053 -1.7198 1.2952 34 1 1.7516 -0.1582 2.1370 35 1 6.4079 0.4863 1.8936 36 1 10.3238 0.3412 -2.9085 37 1 9.0449 0.5754 -0.7625 38 1 6.1123 0.4158 0.1268 39 1 6.7827 1.1656 -1.3559 40 1 6.2089 2.6044 0.9412 41 1 7.4776 3.0823 -0.2212 42 1 9.0769 2.6968 1.3653 43 1 7.8079 2.2204 2.5283 44 1 9.7114 0.4591 1.5520 45 1 8.0812 -0.0579 2.0820 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933242378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:51 Heat of formation + Delta-G solvation = 39.718351 kcal Electronic energy + Delta-G solvation = -26435.937625 eV Core-core repulsion = 22967.611130 eV Total energy + Delta-G solvation = -3468.326495 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.36249 -38.51330 -36.73919 -36.24980 -34.29398 -31.91119 -30.72882 -28.15002 -27.89470 -27.16363 -27.08731 -24.92243 -23.84303 -21.26406 -20.64096 -20.13452 -19.72040 -18.69946 -17.54924 -16.99927 -16.07967 -15.47155 -15.12245 -14.86295 -14.62937 -14.47143 -14.32281 -13.86299 -13.64655 -13.37118 -13.14867 -12.57169 -12.41112 -12.38942 -12.28372 -12.09671 -11.88133 -11.46196 -11.34466 -11.12343 -11.04956 -10.90907 -10.75981 -10.75010 -10.70556 -10.49104 -10.42121 -10.34784 -9.97022 -9.79278 -9.40798 -8.99166 -8.77854 -8.66635 -7.91953 -7.80805 -6.81264 -3.67303 0.93395 1.60830 2.13881 3.00639 3.11767 3.24599 3.35751 3.60805 4.02747 4.33399 4.58040 4.79082 4.81177 4.85971 4.98334 5.25346 5.31160 5.36091 5.42777 5.51257 5.56157 5.61760 5.72584 5.79870 5.81147 5.85469 5.92654 6.02980 6.07361 6.12651 6.22295 6.23688 6.26638 6.36205 6.38782 6.45671 6.56062 6.58176 6.63599 6.84938 7.06471 7.20290 7.45212 7.87843 8.08853 8.37868 8.96972 9.23239 9.69911 10.21167 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.004483 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.937954 B = 6244.429095 C = 6759.585088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.033 4.033 5 C 0.013 3.987 6 N -0.468 5.468 7 C 0.057 3.943 8 C -0.249 4.249 9 C 0.531 3.469 10 O -0.553 6.553 11 N -0.445 5.445 12 C -0.318 4.318 13 H 0.102 0.898 14 C 0.063 3.937 15 N -0.798 5.798 16 Si 0.873 3.127 17 H -0.262 1.262 18 H -0.282 1.282 19 H -0.276 1.276 20 C 0.118 3.882 21 C -0.178 4.178 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.148 4.148 25 S 0.170 5.830 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.186 0.814 36 H 0.275 0.725 37 H 0.146 0.854 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.156 5.015 3.432 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.074 4.074 5 C -0.262 4.262 6 N -0.183 5.183 7 C -0.097 4.097 8 C -0.374 4.374 9 C 0.319 3.681 10 O -0.435 6.435 11 N -0.163 5.163 12 C -0.444 4.444 13 H 0.120 0.880 14 C -0.147 4.147 15 N -0.432 5.432 16 Si 0.697 3.303 17 H -0.186 1.186 18 H -0.208 1.208 19 H -0.201 1.201 20 C 0.014 3.986 21 C -0.216 4.216 22 C -0.159 4.159 23 C -0.160 4.160 24 C -0.186 4.186 25 S 0.426 5.574 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.202 0.798 36 H 0.086 0.914 37 H 0.163 0.837 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.435 4.162 3.328 13.529 hybrid contribution 1.643 0.503 0.080 1.720 sum -10.792 4.665 3.408 12.241 Atomic orbital electron populations 1.21826 0.94732 1.01720 1.01956 1.21131 0.95572 0.97171 0.97307 1.21825 1.02277 0.95002 1.01171 1.20279 0.85512 1.01692 0.99910 1.27010 1.00782 0.95086 1.03321 1.65994 1.02327 1.29572 1.20390 1.22386 0.92337 0.95702 0.99289 1.26497 1.00713 1.00896 1.09338 1.16273 0.83206 0.84864 0.83747 1.90659 1.75626 1.28373 1.48823 1.43201 1.39657 1.06011 1.27481 1.19256 1.13781 0.99315 1.12013 0.88006 1.25146 0.99326 0.95236 0.94968 1.70216 1.31855 1.16717 1.24451 0.86757 0.83806 0.81800 0.77951 1.18588 1.20804 1.20108 1.23199 0.98843 0.81060 0.95523 1.23810 1.01089 0.95948 1.00750 1.22048 0.98085 0.98284 0.97453 1.22086 0.98765 0.96548 0.98591 1.22980 1.01295 0.95646 0.98695 1.83693 0.96484 1.23733 1.53457 0.92534 0.92468 0.92641 0.90964 0.92653 0.91772 0.93128 0.90089 0.89140 0.79788 0.91421 0.83729 0.88447 0.91794 0.92306 0.92202 0.91921 0.92320 0.91731 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.19 37.16 0.34 -0.83 16 2 C -0.09 -0.96 2.91 -90.62 -0.26 -1.23 16 3 C -0.15 -1.67 8.99 37.16 0.33 -1.34 16 4 C -0.03 -0.37 5.26 -27.88 -0.15 -0.52 16 5 C 0.01 0.20 5.87 -13.31 -0.08 0.12 16 6 N -0.47 -8.03 9.73 -36.03 -0.35 -8.38 16 7 C 0.06 1.08 7.01 -18.46 -0.13 0.95 16 8 C -0.25 -5.23 5.13 -36.76 -0.19 -5.42 16 9 C 0.53 13.22 5.49 -12.90 -0.07 13.15 16 10 O -0.55 -15.45 17.64 5.17 0.09 -15.35 16 11 N -0.45 -11.16 2.69 -107.08 -0.29 -11.45 16 12 C -0.32 -8.48 9.27 -15.01 -0.14 -8.62 16 13 H 0.10 2.82 8.06 -52.48 -0.42 2.39 16 14 C 0.06 1.58 4.77 -17.45 -0.08 1.49 16 15 N -0.80 -19.52 11.02 55.50 0.61 -18.91 16 16 Si 0.87 19.27 29.69 -169.99 -5.05 14.22 16 17 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 C 0.12 2.61 2.93 -65.90 -0.19 2.42 16 21 C -0.18 -3.52 5.65 -25.03 -0.14 -3.67 16 22 C -0.12 -1.97 6.02 -25.61 -0.15 -2.13 16 23 C -0.12 -1.93 6.07 -25.61 -0.16 -2.08 16 24 C -0.15 -2.86 5.64 -25.07 -0.14 -3.00 16 25 S 0.17 2.95 23.16 -107.50 -2.49 0.46 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.90 6.79 -51.93 -0.35 0.55 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.19 3.41 3.31 -52.48 -0.17 3.24 16 36 H 0.28 6.22 8.31 -40.82 -0.34 5.88 16 37 H 0.15 3.47 4.65 -51.93 -0.24 3.22 16 38 H 0.10 1.95 2.20 -100.71 -0.22 1.72 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.06 1.21 5.37 -51.93 -0.28 0.93 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -28.49 358.12 -10.03 -38.52 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.74 Total: 6.21 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -1.21 Total: -10.71 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: -0.03 Total: -38.74 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.09 Total: -15.35 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.05 Total: 14.22 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -2.49 Total: 0.46 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.49 -10.03 -38.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933242378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.239 kcal (2) G-P(sol) polarization free energy of solvation -28.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds