Wall clock time and date at job start Tue Mar 31 2020 13:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46652 * 2 1 4 4 C 1.52996 * 109.47020 * 119.99876 * 2 1 3 5 5 C 1.50701 * 109.47153 * 175.00346 * 4 2 1 6 6 N 1.29379 * 124.70031 * 89.97641 * 5 4 2 7 7 C 1.30941 * 117.46038 * 180.02562 * 6 5 4 8 8 C 1.36773 * 113.92652 * 359.97438 * 7 6 5 9 9 C 1.46564 * 126.17898 * 179.97438 * 8 7 6 10 10 O 1.21724 * 119.99877 * 115.72205 * 9 8 7 11 11 N 1.34775 * 120.00288 * 295.71925 * 9 8 7 12 12 C 1.36891 * 120.00003 * 227.63683 * 11 9 8 13 13 H 1.08005 * 120.00280 * 12.52272 * 12 11 9 14 14 C 1.39008 * 119.99790 * 192.53044 * 12 11 9 15 15 N 1.31400 * 120.00295 * 310.37565 * 14 12 11 16 16 Si 1.86807 * 120.00135 * 130.37555 * 14 12 11 17 17 H 1.48499 * 109.46859 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47097 * 119.99745 * 16 14 12 19 19 H 1.48502 * 109.47058 * 239.99955 * 16 14 12 20 20 C 1.46500 * 119.99736 * 47.63103 * 11 9 8 21 21 C 1.54965 * 110.92450 * 297.38564 * 20 11 9 22 22 C 1.54269 * 104.15727 * 156.29526 * 21 20 11 23 23 C 1.53873 * 106.64165 * 336.45107 * 22 21 20 24 24 C 1.54268 * 106.60082 * 359.97376 * 23 22 21 25 25 S 1.70917 * 124.70043 * 270.27056 * 5 4 2 26 26 H 1.08996 * 109.47757 * 300.00109 * 1 2 3 27 27 H 1.09001 * 109.46751 * 60.00399 * 1 2 3 28 28 H 1.09003 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47306 * 239.99926 * 2 1 3 30 30 H 1.08996 * 109.46786 * 60.00401 * 3 2 1 31 31 H 1.09002 * 109.46690 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46924 * 299.99530 * 3 2 1 33 33 H 1.09005 * 109.47058 * 54.99957 * 4 2 1 34 34 H 1.09004 * 109.47068 * 295.00190 * 4 2 1 35 35 H 1.08008 * 123.03502 * 180.02562 * 7 6 5 36 36 H 0.96995 * 120.00194 * 180.02562 * 15 14 12 37 37 H 1.09002 * 110.66874 * 174.08638 * 20 11 9 38 38 H 1.08998 * 110.47435 * 37.64667 * 21 20 11 39 39 H 1.08997 * 110.53257 * 274.97807 * 21 20 11 40 40 H 1.08993 * 110.03406 * 217.13800 * 22 21 20 41 41 H 1.09001 * 110.02657 * 95.75799 * 22 21 20 42 42 H 1.09000 * 110.03064 * 119.25703 * 23 22 21 43 43 H 1.09001 * 110.02950 * 240.63951 * 23 22 21 44 44 H 1.08994 * 110.48459 * 142.28469 * 24 23 22 45 45 H 1.08994 * 110.48336 * 264.80287 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8293 1.1889 6 7 4.3633 0.0512 1.6622 7 6 5.6443 -0.1865 1.5317 8 6 5.9282 -1.3643 0.8970 9 6 7.2650 -1.8920 0.6097 10 8 7.6345 -2.9290 1.1291 11 7 8.0851 -1.2292 -0.2297 12 6 8.7380 -1.9055 -1.2248 13 1 8.4496 -2.9172 -1.4694 14 6 9.7722 -1.2902 -1.9205 15 7 9.6022 -0.0880 -2.4228 16 14 11.4040 -2.1724 -2.1413 17 1 11.3398 -3.5033 -1.4858 18 1 11.6805 -2.3464 -3.5899 19 1 12.4889 -1.3686 -1.5233 20 6 8.2778 0.2150 -0.0770 21 6 6.9462 0.9771 -0.2949 22 6 7.1426 2.3049 0.4655 23 6 8.2191 2.0458 1.5340 24 6 8.6397 0.5688 1.3868 25 16 4.3963 -2.1286 0.4796 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6053 -1.7198 1.2952 34 1 1.7516 -0.1582 2.1370 35 1 6.4079 0.4863 1.8936 36 1 10.3238 0.3412 -2.9085 37 1 9.0449 0.5754 -0.7625 38 1 6.1123 0.4158 0.1268 39 1 6.7827 1.1656 -1.3559 40 1 6.2089 2.6044 0.9412 41 1 7.4776 3.0823 -0.2212 42 1 9.0769 2.6968 1.3653 43 1 7.8079 2.2204 2.5283 44 1 9.7114 0.4591 1.5520 45 1 8.0812 -0.0579 2.0820 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933242378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:50 Heat of formation + Delta-G solvation = 23.912709 kcal Electronic energy + Delta-G solvation = -26436.623009 eV Core-core repulsion = 22967.611130 eV Total energy + Delta-G solvation = -3469.011879 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.93854 -40.08152 -38.45619 -37.22864 -36.09553 -33.78059 -32.09221 -29.55800 -29.30119 -28.66800 -27.92857 -26.67850 -25.23989 -22.95265 -22.04630 -21.18802 -21.10652 -20.36013 -19.08290 -18.67485 -17.72714 -17.14290 -16.48516 -16.43559 -16.09523 -16.03834 -15.65319 -15.22707 -14.88106 -14.71957 -14.60401 -14.17867 -14.06946 -13.79581 -13.41534 -13.31952 -13.00890 -12.91085 -12.67598 -12.61738 -12.40343 -12.31065 -12.20094 -12.11672 -12.00908 -11.92472 -11.77336 -11.57657 -11.46123 -11.27223 -11.00882 -10.64925 -10.47256 -10.34585 -9.76936 -9.31767 -8.72506 -5.67379 -0.50285 0.12177 0.71014 1.21984 1.40331 1.50762 1.63314 1.83919 2.21276 2.65403 3.01393 3.11688 3.79779 3.83431 3.85220 3.89413 3.98184 4.05142 4.19780 4.29202 4.39404 4.57136 4.67315 4.70374 4.72529 4.74826 4.75788 4.87828 4.88400 4.92098 4.98576 5.04271 5.09274 5.09493 5.19250 5.22187 5.32386 5.35267 5.39738 5.49896 5.51467 5.53059 5.59701 5.94014 6.46962 6.64445 7.05446 7.36015 7.79792 8.31350 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.004483 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.937954 B = 6244.429095 C = 6759.585088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.037 4.037 5 C 0.050 3.950 6 N -0.478 5.478 7 C 0.083 3.917 8 C -0.303 4.303 9 C 0.530 3.470 10 O -0.602 6.602 11 N -0.457 5.457 12 C -0.372 4.372 13 H 0.072 0.928 14 C 0.048 3.952 15 N -0.806 5.806 16 Si 0.931 3.069 17 H -0.282 1.282 18 H -0.267 1.267 19 H -0.265 1.265 20 C 0.110 3.890 21 C -0.173 4.173 22 C -0.112 4.112 23 C -0.112 4.112 24 C -0.146 4.146 25 S 0.179 5.821 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.189 0.811 36 H 0.286 0.714 37 H 0.128 0.872 38 H 0.098 0.902 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.232 7.094 4.209 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 C -0.203 4.203 4 C -0.078 4.078 5 C -0.226 4.226 6 N -0.192 5.192 7 C -0.072 4.072 8 C -0.428 4.428 9 C 0.320 3.680 10 O -0.488 6.488 11 N -0.175 5.175 12 C -0.497 4.497 13 H 0.090 0.910 14 C -0.163 4.163 15 N -0.439 5.439 16 Si 0.753 3.247 17 H -0.208 1.208 18 H -0.192 1.192 19 H -0.190 1.190 20 C 0.007 3.993 21 C -0.211 4.211 22 C -0.150 4.150 23 C -0.150 4.150 24 C -0.184 4.184 25 S 0.436 5.564 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.205 0.795 36 H 0.097 0.903 37 H 0.144 0.856 38 H 0.115 0.885 39 H 0.060 0.940 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.500 6.278 4.066 16.315 hybrid contribution 2.113 -0.124 -0.161 2.123 sum -12.387 6.154 3.904 14.372 Atomic orbital electron populations 1.21781 0.92297 1.02799 1.02781 1.21134 0.97497 0.96159 0.96203 1.21828 1.00324 0.96000 1.02135 1.20634 0.82120 1.03828 1.01175 1.27934 1.02485 0.92911 0.99258 1.66136 1.01513 1.29910 1.21655 1.22459 0.93260 0.94335 0.97166 1.26117 1.00038 1.03153 1.13472 1.16696 0.84443 0.84215 0.82636 1.90594 1.76969 1.30512 1.50769 1.43206 1.40353 1.07179 1.26796 1.19075 1.17406 0.99062 1.14127 0.91014 1.25601 1.00450 0.96038 0.94241 1.70196 1.32668 1.17276 1.23803 0.85916 0.80518 0.79852 0.78368 1.20764 1.19238 1.18952 1.23208 0.99637 0.79657 0.96837 1.23734 0.99813 0.97616 0.99888 1.22014 0.99193 0.96343 0.97465 1.22070 0.99300 0.93827 0.99755 1.22955 1.00836 0.98154 0.96485 1.83608 0.94731 1.24299 1.53723 0.91462 0.91963 0.91482 0.91954 0.91679 0.94669 0.92307 0.87470 0.87343 0.79467 0.90331 0.85556 0.88486 0.94037 0.90601 0.91103 0.90193 0.89770 0.92317 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.19 71.98 0.66 -1.05 16 2 C -0.09 -1.61 2.91 -10.79 -0.03 -1.64 16 3 C -0.15 -2.97 8.99 71.98 0.65 -2.32 16 4 C -0.04 -0.70 5.26 29.85 0.16 -0.54 16 5 C 0.05 1.42 5.87 88.47 0.52 1.94 16 6 N -0.48 -15.53 9.73 -267.90 -2.61 -18.13 16 7 C 0.08 3.09 7.01 84.48 0.59 3.68 16 8 C -0.30 -13.09 5.13 24.10 0.12 -12.97 16 9 C 0.53 27.96 5.49 86.41 0.47 28.43 16 10 O -0.60 -35.99 17.64 -4.42 -0.08 -36.07 16 11 N -0.46 -24.24 2.69 -610.90 -1.64 -25.88 16 12 C -0.37 -21.14 9.27 84.09 0.78 -20.36 16 13 H 0.07 4.35 8.06 -2.91 -0.02 4.33 16 14 C 0.05 2.44 4.77 84.94 0.41 2.85 16 15 N -0.81 -40.19 11.02 21.68 0.24 -39.95 16 16 Si 0.93 40.79 29.69 68.60 2.04 42.82 16 17 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 18 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 19 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 20 C 0.11 5.02 2.93 46.31 0.14 5.15 16 21 C -0.17 -6.89 5.65 31.70 0.18 -6.71 16 22 C -0.11 -3.45 6.02 31.32 0.19 -3.26 16 23 C -0.11 -3.28 6.07 31.32 0.19 -3.09 16 24 C -0.15 -5.66 5.64 31.67 0.18 -5.49 16 25 S 0.18 6.19 23.16 -56.49 -1.31 4.88 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.03 0.92 6.79 -2.39 -0.02 0.90 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.19 6.78 3.31 -2.91 -0.01 6.77 16 36 H 0.29 12.90 8.31 -92.71 -0.77 12.13 16 37 H 0.13 6.23 4.65 -2.39 -0.01 6.22 16 38 H 0.10 3.91 2.20 -48.20 -0.11 3.80 16 39 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.05 2.02 5.37 -2.39 -0.01 2.01 16 Total: -1.00 -66.32 358.12 2.74 -63.58 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.90 Total: 24.12 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 5.20 Total: -15.36 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -4.01 Total: -83.97 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -0.08 Total: -36.07 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.04 Total: 42.82 kcal Atomic # 16 Polarization: 6.19 SS G_CDS: -1.31 Total: 4.88 kcal Total: -66.32 2.74 -63.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933242378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.491 kcal (2) G-P(sol) polarization free energy of solvation -66.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds