Wall clock time and date at job start Tue Mar 31 2020 13:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46957 * 2 1 4 4 C 1.53005 * 109.46644 * 240.00445 * 2 1 3 5 5 C 1.50702 * 109.46787 * 184.99868 * 4 2 1 6 6 N 1.29436 * 124.80296 * 90.02091 * 5 4 2 7 7 C 1.30945 * 117.36074 * 179.97438 * 6 5 4 8 8 C 1.35661 * 114.19276 * 0.02562 * 7 6 5 9 9 C 1.46676 * 126.12863 * 179.97438 * 8 7 6 10 10 O 1.21685 * 120.00246 * 29.12422 * 9 8 7 11 11 N 1.34777 * 120.00210 * 209.12348 * 9 8 7 12 12 C 1.46924 * 120.62935 * 6.12577 * 11 9 8 13 13 C 1.53629 * 108.54809 * 126.36690 * 12 11 9 14 14 C 1.53042 * 109.23821 * 54.85434 * 13 12 11 15 15 C 1.50705 * 109.44497 * 178.50279 * 14 13 12 16 16 H 1.07997 * 119.99881 * 120.06644 * 15 14 13 17 17 C 1.37882 * 119.99717 * 300.05663 * 15 14 13 18 18 N 1.31510 * 119.99886 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99670 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46979 * 60.00588 * 19 17 15 21 21 H 1.48500 * 109.47073 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47316 * 300.00369 * 19 17 15 23 23 C 1.53041 * 109.53771 * 298.51272 * 14 13 12 24 24 C 1.46925 * 120.63492 * 186.40411 * 11 9 8 25 25 S 1.70950 * 124.80337 * 269.72124 * 5 4 2 26 26 H 1.09003 * 109.47322 * 59.99468 * 1 2 3 27 27 H 1.08993 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46725 * 299.99573 * 1 2 3 29 29 H 1.08994 * 109.47213 * 120.00252 * 2 1 3 30 30 H 1.08994 * 109.47365 * 300.00159 * 3 2 1 31 31 H 1.08999 * 109.47055 * 60.00629 * 3 2 1 32 32 H 1.09000 * 109.46963 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47007 * 304.99969 * 4 2 1 34 34 H 1.08998 * 109.47406 * 65.00182 * 4 2 1 35 35 H 1.08003 * 122.89826 * 180.02562 * 7 6 5 36 36 H 1.08997 * 109.58930 * 246.20334 * 12 11 9 37 37 H 1.09001 * 109.58956 * 6.62598 * 12 11 9 38 38 H 1.09001 * 109.62900 * 294.86594 * 13 12 11 39 39 H 1.08999 * 109.43139 * 174.72756 * 13 12 11 40 40 H 1.08999 * 109.45874 * 58.53757 * 14 13 12 41 41 H 0.97003 * 119.99909 * 180.02562 * 18 17 15 42 42 H 1.08991 * 109.49962 * 301.41285 * 23 14 13 43 43 H 1.08997 * 109.49341 * 181.31895 * 23 14 13 44 44 H 1.08999 * 109.58300 * 353.37147 * 24 11 9 45 45 H 1.08992 * 109.59034 * 113.65506 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5419 -0.8293 -1.1891 6 7 4.1908 -1.8149 -0.6573 7 6 5.4988 -1.7595 -0.6859 8 6 5.9952 -0.6477 -1.2841 9 6 7.4141 -0.3199 -1.4587 10 8 8.2365 -1.2111 -1.5601 11 7 7.8073 0.9683 -1.5068 12 6 6.8496 2.0532 -1.2527 13 6 7.4183 2.9588 -0.1497 14 6 8.8139 3.4357 -0.5585 15 6 9.3613 4.3541 0.5036 16 1 10.2787 4.1023 1.0147 17 6 8.6909 5.5160 0.8226 18 7 7.5735 5.8224 0.2004 19 14 9.3698 6.6547 2.1386 20 1 10.7232 7.1191 1.7411 21 1 8.4695 7.8257 2.2924 22 1 9.4560 5.9244 3.4287 23 6 9.7414 2.2287 -0.7163 24 6 9.2003 1.3148 -1.8202 25 16 4.6296 0.3288 -1.8198 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6053 -1.7197 -1.2953 34 1 1.7516 -0.1582 -2.1370 35 1 6.1279 -2.5322 -0.2693 36 1 6.7025 2.6318 -2.1647 37 1 5.8983 1.6322 -0.9273 38 1 7.4835 2.4011 0.7845 39 1 6.7643 3.8203 -0.0148 40 1 8.7514 3.9720 -1.5054 41 1 7.1020 6.6400 0.4246 42 1 9.7848 1.6780 0.2233 43 1 10.7410 2.5707 -0.9845 44 1 9.8005 0.4063 -1.8694 45 1 9.2414 1.8321 -2.7787 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935317911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:50 Heat of formation + Delta-G solvation = -11.119362 kcal Electronic energy + Delta-G solvation = -25342.534566 eV Core-core repulsion = 21872.003583 eV Total energy + Delta-G solvation = -3470.530983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.19037 -39.30667 -36.92040 -36.51233 -33.62607 -31.81809 -30.82578 -30.11668 -28.24294 -27.38635 -26.24456 -24.46580 -23.18901 -22.64456 -21.30145 -20.55285 -19.38286 -18.53214 -18.05928 -16.75073 -16.11640 -16.03320 -15.46181 -15.21548 -14.66924 -14.57953 -14.50836 -14.25784 -13.55603 -13.43889 -13.19528 -12.87804 -12.80070 -12.68948 -12.45398 -12.41049 -12.13118 -11.81717 -11.65403 -11.36302 -11.32856 -11.16606 -10.96760 -10.93837 -10.72806 -10.48405 -10.21480 -9.93027 -9.71992 -9.60740 -9.30336 -9.24845 -9.02833 -8.69039 -8.42479 -8.12690 -6.08277 -4.14340 0.30043 1.15928 1.59201 2.54096 3.17169 3.27003 3.31759 3.34937 3.41221 3.95471 4.37068 4.57907 4.61718 4.71041 4.80391 5.07000 5.20851 5.28418 5.32040 5.35676 5.43872 5.45974 5.50601 5.66199 5.70670 5.73085 5.83440 5.89111 5.94030 6.05258 6.06395 6.08652 6.13931 6.16475 6.34528 6.56414 6.79610 6.95056 7.04188 7.18547 7.57298 7.61004 7.74696 7.84251 7.96565 8.33016 8.34029 8.88588 9.51013 10.97356 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012610 B = 0.003983 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.905728 B = 7028.931861 C = 8795.157686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.160 4.160 4 C -0.041 4.041 5 C 0.035 3.965 6 N -0.479 5.479 7 C 0.109 3.891 8 C -0.287 4.287 9 C 0.590 3.410 10 O -0.542 6.542 11 N -0.593 5.593 12 C 0.092 3.908 13 C -0.119 4.119 14 C 0.049 3.951 15 C -0.513 4.513 16 H 0.055 0.945 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.124 4.124 24 C 0.114 3.886 25 S 0.202 5.798 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.183 0.817 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.107 0.893 40 H 0.029 0.971 41 H 0.261 0.739 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.070 -9.509 -4.383 16.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.217 4.217 4 C -0.082 4.082 5 C -0.239 4.239 6 N -0.193 5.193 7 C -0.048 4.048 8 C -0.411 4.411 9 C 0.376 3.624 10 O -0.422 6.422 11 N -0.325 5.325 12 C -0.031 4.031 13 C -0.158 4.158 14 C 0.031 3.969 15 C -0.551 4.551 16 H 0.073 0.927 17 C -0.138 4.138 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.162 4.162 24 C -0.008 4.008 25 S 0.460 5.540 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.200 0.800 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.125 0.875 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.226 -9.271 -4.772 16.842 hybrid contribution 0.886 0.054 1.188 1.483 sum -12.340 -9.217 -3.584 15.814 Atomic orbital electron populations 1.21817 0.94282 1.01919 1.02211 1.21113 0.96030 0.96577 0.97410 1.22033 1.01750 0.95398 1.02529 1.20435 0.85142 1.03029 0.99564 1.27643 1.02208 0.94027 1.00032 1.66214 1.07383 1.25957 1.19781 1.22044 0.89511 0.96340 0.96947 1.25810 0.98683 1.01989 1.14630 1.16810 0.85297 0.83070 0.77257 1.90782 1.52713 1.46779 1.51945 1.48112 1.11801 1.04960 1.67588 1.22522 0.90762 0.88533 1.01255 1.22096 1.01469 0.98051 0.94164 1.18640 0.90182 0.90861 0.97248 1.21156 1.08524 1.04902 1.20555 0.92673 1.24948 0.94941 0.97638 0.96315 1.69812 1.16324 1.25020 1.41924 0.86670 0.78931 0.80232 0.82264 1.20266 1.21268 1.20322 1.22020 0.99915 0.97523 0.96750 1.21775 0.80453 0.99791 0.98771 1.84309 0.95028 1.20998 1.53644 0.92411 0.92494 0.92210 0.90427 0.92168 0.91911 0.92305 0.88726 0.89505 0.80006 0.91273 0.91398 0.94095 0.87482 0.95323 0.92863 0.92772 0.91840 0.90020 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.19 37.16 0.34 -0.62 16 2 C -0.09 -0.78 2.91 -90.61 -0.26 -1.05 16 3 C -0.16 -1.50 8.89 37.16 0.33 -1.17 16 4 C -0.04 -0.36 5.27 -27.88 -0.15 -0.51 16 5 C 0.04 0.42 6.00 -13.29 -0.08 0.34 16 6 N -0.48 -6.73 10.51 -11.50 -0.12 -6.86 16 7 C 0.11 1.62 11.21 -18.85 -0.21 1.41 16 8 C -0.29 -4.53 5.79 -37.10 -0.21 -4.75 16 9 C 0.59 10.82 7.60 -12.85 -0.10 10.72 16 10 O -0.54 -11.16 16.41 5.20 0.09 -11.08 16 11 N -0.59 -10.80 2.97 -174.05 -0.52 -11.32 16 12 C 0.09 1.65 5.59 -3.48 -0.02 1.63 16 13 C -0.12 -2.59 5.17 -26.38 -0.14 -2.73 16 14 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 15 C -0.51 -13.41 8.56 -34.44 -0.29 -13.71 16 16 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 18 N -0.89 -23.83 11.30 55.43 0.63 -23.20 16 19 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 C -0.12 -2.49 5.30 -26.61 -0.14 -2.63 16 24 C 0.11 2.04 6.44 -3.71 -0.02 2.02 16 25 S 0.20 2.58 17.89 -107.50 -1.92 0.65 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.65 6.15 -51.93 -0.32 0.33 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.18 2.50 8.06 -52.48 -0.42 2.08 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.11 3.91 -25.75 -0.10 1.01 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.11 2.56 6.03 -51.93 -0.31 2.25 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -29.05 366.41 -9.57 -38.62 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.98 Total: 0.68 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -1.24 Total: -8.53 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.01 Total: -41.38 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -1.92 Total: 0.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.05 -9.57 -38.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935317911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.501 kcal (2) G-P(sol) polarization free energy of solvation -29.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds