Wall clock time and date at job start Tue Mar 31 2020 13:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46957 * 2 1 4 4 C 1.53005 * 109.46644 * 240.00445 * 2 1 3 5 5 C 1.50702 * 109.46787 * 184.99868 * 4 2 1 6 6 N 1.29436 * 124.80296 * 90.02091 * 5 4 2 7 7 C 1.30945 * 117.36074 * 179.97438 * 6 5 4 8 8 C 1.35661 * 114.19276 * 0.02562 * 7 6 5 9 9 C 1.46676 * 126.12863 * 179.97438 * 8 7 6 10 10 O 1.21685 * 120.00246 * 29.12422 * 9 8 7 11 11 N 1.34777 * 120.00210 * 209.12348 * 9 8 7 12 12 C 1.46924 * 120.62935 * 6.12577 * 11 9 8 13 13 C 1.53629 * 108.54809 * 126.36690 * 12 11 9 14 14 C 1.53042 * 109.23821 * 54.85434 * 13 12 11 15 15 C 1.50705 * 109.44497 * 178.50279 * 14 13 12 16 16 H 1.07997 * 119.99881 * 120.06644 * 15 14 13 17 17 C 1.37882 * 119.99717 * 300.05663 * 15 14 13 18 18 N 1.31510 * 119.99886 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99670 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46979 * 60.00588 * 19 17 15 21 21 H 1.48500 * 109.47073 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47316 * 300.00369 * 19 17 15 23 23 C 1.53041 * 109.53771 * 298.51272 * 14 13 12 24 24 C 1.46925 * 120.63492 * 186.40411 * 11 9 8 25 25 S 1.70950 * 124.80337 * 269.72124 * 5 4 2 26 26 H 1.09003 * 109.47322 * 59.99468 * 1 2 3 27 27 H 1.08993 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46725 * 299.99573 * 1 2 3 29 29 H 1.08994 * 109.47213 * 120.00252 * 2 1 3 30 30 H 1.08994 * 109.47365 * 300.00159 * 3 2 1 31 31 H 1.08999 * 109.47055 * 60.00629 * 3 2 1 32 32 H 1.09000 * 109.46963 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47007 * 304.99969 * 4 2 1 34 34 H 1.08998 * 109.47406 * 65.00182 * 4 2 1 35 35 H 1.08003 * 122.89826 * 180.02562 * 7 6 5 36 36 H 1.08997 * 109.58930 * 246.20334 * 12 11 9 37 37 H 1.09001 * 109.58956 * 6.62598 * 12 11 9 38 38 H 1.09001 * 109.62900 * 294.86594 * 13 12 11 39 39 H 1.08999 * 109.43139 * 174.72756 * 13 12 11 40 40 H 1.08999 * 109.45874 * 58.53757 * 14 13 12 41 41 H 0.97003 * 119.99909 * 180.02562 * 18 17 15 42 42 H 1.08991 * 109.49962 * 301.41285 * 23 14 13 43 43 H 1.08997 * 109.49341 * 181.31895 * 23 14 13 44 44 H 1.08999 * 109.58300 * 353.37147 * 24 11 9 45 45 H 1.08992 * 109.59034 * 113.65506 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5419 -0.8293 -1.1891 6 7 4.1908 -1.8149 -0.6573 7 6 5.4988 -1.7595 -0.6859 8 6 5.9952 -0.6477 -1.2841 9 6 7.4141 -0.3199 -1.4587 10 8 8.2365 -1.2111 -1.5601 11 7 7.8073 0.9683 -1.5068 12 6 6.8496 2.0532 -1.2527 13 6 7.4183 2.9588 -0.1497 14 6 8.8139 3.4357 -0.5585 15 6 9.3613 4.3541 0.5036 16 1 10.2787 4.1023 1.0147 17 6 8.6909 5.5160 0.8226 18 7 7.5735 5.8224 0.2004 19 14 9.3698 6.6547 2.1386 20 1 10.7232 7.1191 1.7411 21 1 8.4695 7.8257 2.2924 22 1 9.4560 5.9244 3.4287 23 6 9.7414 2.2287 -0.7163 24 6 9.2003 1.3148 -1.8202 25 16 4.6296 0.3288 -1.8198 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6053 -1.7197 -1.2953 34 1 1.7516 -0.1582 -2.1370 35 1 6.1279 -2.5322 -0.2693 36 1 6.7025 2.6318 -2.1647 37 1 5.8983 1.6322 -0.9273 38 1 7.4835 2.4011 0.7845 39 1 6.7643 3.8203 -0.0148 40 1 8.7514 3.9720 -1.5054 41 1 7.1020 6.6400 0.4246 42 1 9.7848 1.6780 0.2233 43 1 10.7410 2.5707 -0.9845 44 1 9.8005 0.4063 -1.8694 45 1 9.2414 1.8321 -2.7787 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935317911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:49 Heat of formation + Delta-G solvation = -26.334392 kcal Electronic energy + Delta-G solvation = -25343.194340 eV Core-core repulsion = 21872.003583 eV Total energy + Delta-G solvation = -3471.190757 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.48399 -40.56190 -38.45779 -37.31706 -35.41707 -33.39917 -32.22366 -31.55241 -29.31492 -28.02833 -27.94099 -25.62217 -24.73854 -24.19099 -22.66184 -21.46109 -20.84564 -19.61762 -19.44345 -18.45222 -17.67499 -17.36429 -16.58477 -16.51933 -16.24621 -15.79547 -15.57440 -15.16911 -14.97095 -14.83122 -14.59702 -14.38664 -14.26778 -13.97316 -13.54597 -13.38366 -13.24302 -13.04802 -12.81637 -12.78996 -12.63170 -12.49908 -12.19400 -12.09830 -12.06131 -11.85307 -11.61117 -11.55738 -11.28114 -11.04955 -10.96571 -10.69604 -10.43805 -10.30516 -9.82590 -9.66015 -8.08519 -6.21151 -0.80862 0.07754 0.50977 1.35543 1.42967 1.43987 1.50823 1.80304 2.05980 2.44192 3.00049 3.18390 3.42540 3.82181 3.91195 3.95316 4.01362 4.15448 4.21499 4.29577 4.34101 4.36467 4.51364 4.57752 4.59480 4.72722 4.79481 4.80570 4.89688 4.90410 4.97980 5.03286 5.10524 5.14656 5.17692 5.31182 5.35804 5.42283 5.45295 5.48210 5.62296 5.95901 6.07103 6.24846 6.37997 6.54634 6.87039 6.89494 7.46443 8.95089 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012610 B = 0.003983 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.905728 B = 7028.931861 C = 8795.157686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.163 4.163 4 C -0.044 4.044 5 C 0.052 3.948 6 N -0.497 5.497 7 C 0.115 3.885 8 C -0.325 4.325 9 C 0.591 3.409 10 O -0.571 6.571 11 N -0.597 5.597 12 C 0.104 3.896 13 C -0.110 4.110 14 C 0.047 3.953 15 C -0.537 4.537 16 H 0.047 0.953 17 C 0.022 3.978 18 N -0.909 5.909 19 Si 0.946 3.054 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.277 1.277 23 C -0.115 4.115 24 C 0.118 3.882 25 S 0.229 5.771 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.186 0.814 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.023 0.977 39 H 0.085 0.915 40 H 0.010 0.990 41 H 0.263 0.737 42 H 0.040 0.960 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.935 -9.653 -4.920 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C -0.221 4.221 4 C -0.084 4.084 5 C -0.221 4.221 6 N -0.212 5.212 7 C -0.043 4.043 8 C -0.449 4.449 9 C 0.379 3.621 10 O -0.453 6.453 11 N -0.328 5.328 12 C -0.019 4.019 13 C -0.149 4.149 14 C 0.029 3.971 15 C -0.575 4.575 16 H 0.065 0.935 17 C -0.178 4.178 18 N -0.548 5.548 19 Si 0.772 3.228 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.203 1.203 23 C -0.153 4.153 24 C -0.004 4.004 25 S 0.488 5.512 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.203 0.797 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.042 0.958 39 H 0.104 0.896 40 H 0.028 0.972 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.093 -9.401 -5.317 18.560 hybrid contribution 1.380 0.093 1.380 1.954 sum -13.714 -9.308 -3.937 17.036 Atomic orbital electron populations 1.21786 0.92415 1.02708 1.02892 1.21072 0.97470 0.95653 0.96519 1.22077 1.00411 0.96256 1.03327 1.20705 0.82595 1.04372 1.00734 1.28290 1.03590 0.92750 0.97518 1.66302 1.06944 1.26952 1.20964 1.22200 0.90071 0.95992 0.96020 1.25622 0.98326 1.03667 1.17267 1.17069 0.86225 0.82517 0.76288 1.90753 1.53949 1.47346 1.53221 1.48134 1.11821 1.05151 1.67720 1.22373 0.91229 0.88034 1.00277 1.21851 1.00466 0.97741 0.94808 1.18602 0.91595 0.91482 0.95464 1.21497 1.08572 1.05998 1.21470 0.93474 1.25585 0.95268 0.98881 0.98052 1.69912 1.16899 1.25304 1.42733 0.85799 0.78440 0.78587 0.79926 1.19938 1.20692 1.20300 1.21873 0.99812 0.96565 0.97035 1.21726 0.80571 0.99532 0.98545 1.84096 0.93629 1.20488 1.52985 0.91174 0.91678 0.92140 0.92035 0.90749 0.91880 0.94334 0.87374 0.86983 0.79703 0.90189 0.89630 0.95794 0.89630 0.97172 0.92795 0.94142 0.91122 0.89634 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.19 71.98 0.66 -0.80 16 2 C -0.09 -1.28 2.91 -10.79 -0.03 -1.31 16 3 C -0.16 -2.75 8.89 71.98 0.64 -2.11 16 4 C -0.04 -0.63 5.27 29.85 0.16 -0.48 16 5 C 0.05 1.15 6.00 88.46 0.53 1.69 16 6 N -0.50 -13.29 10.51 -190.29 -2.00 -15.29 16 7 C 0.12 3.36 11.21 84.23 0.94 4.31 16 8 C -0.32 -10.06 5.79 23.88 0.14 -9.92 16 9 C 0.59 21.58 7.60 86.45 0.66 22.23 16 10 O -0.57 -23.58 16.41 -4.30 -0.07 -23.65 16 11 N -0.60 -21.57 2.97 -822.79 -2.44 -24.01 16 12 C 0.10 3.68 5.59 86.51 0.48 4.16 16 13 C -0.11 -4.85 5.17 30.82 0.16 -4.70 16 14 C 0.05 2.22 2.06 -11.51 -0.02 2.20 16 15 C -0.54 -28.55 8.56 25.60 0.22 -28.34 16 16 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 17 C 0.02 1.14 5.30 84.66 0.45 1.59 16 18 N -0.91 -48.93 11.30 21.45 0.24 -48.69 16 19 Si 0.95 42.19 29.54 68.60 2.03 44.21 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 23 C -0.11 -4.65 5.30 30.67 0.16 -4.49 16 24 C 0.12 4.19 6.44 86.36 0.56 4.75 16 25 S 0.23 5.47 17.89 -56.49 -1.01 4.46 16 26 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.04 0.80 6.15 -2.39 -0.01 0.78 16 33 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.19 5.08 8.06 -2.91 -0.02 5.06 16 36 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.09 2.73 3.91 -19.03 -0.07 2.65 16 38 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 4.17 6.03 -2.39 -0.01 4.16 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 44 H 0.09 3.01 7.00 -2.39 -0.02 2.99 16 45 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -62.49 366.41 3.36 -59.12 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.91 Total: 15.05 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 5.70 Total: -11.22 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -4.20 Total: -87.98 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.07 Total: -23.65 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 5.47 SS G_CDS: -1.01 Total: 4.46 kcal Total: -62.49 3.36 -59.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935317911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.788 kcal (2) G-P(sol) polarization free energy of solvation -62.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds