Wall clock time and date at job start Tue Mar 31 2020 13:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47432 * 2 1 4 4 C 1.37477 * 122.44716 * 265.26175 * 3 2 1 5 5 C 1.36648 * 113.29498 * 180.24147 * 4 3 2 6 6 C 1.46580 * 125.45903 * 179.80447 * 5 4 3 7 7 O 1.21709 * 119.99724 * 5.46448 * 6 5 4 8 8 N 1.34775 * 120.00161 * 185.46273 * 6 5 4 9 9 C 1.47020 * 125.64870 * 355.20173 * 8 6 5 10 10 C 1.54317 * 107.27089 * 178.97388 * 9 8 6 11 11 H 1.08997 * 110.72000 * 96.35012 * 10 9 8 12 12 C 1.53000 * 110.72162 * 219.44111 * 10 9 8 13 13 C 1.55153 * 103.10234 * 337.89486 * 10 9 8 14 14 H 1.09003 * 111.00353 * 277.33592 * 13 10 9 15 15 N 1.46508 * 111.00324 * 153.48861 * 13 10 9 16 16 C 1.36933 * 120.00019 * 155.00248 * 15 13 10 17 17 H 1.08003 * 120.00323 * 359.97438 * 16 15 13 18 18 C 1.38813 * 120.00129 * 180.02562 * 16 15 13 19 19 N 1.31616 * 119.99816 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00122 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47064 * 59.99369 * 20 18 16 22 22 H 1.48497 * 109.47120 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46734 * 299.99522 * 20 18 16 24 24 C 1.47424 * 125.64706 * 175.23849 * 8 6 5 25 25 S 1.75833 * 109.08095 * 359.54311 * 5 4 3 26 26 C 1.33815 * 122.45024 * 85.00126 * 3 2 1 27 27 C 1.50693 * 124.52414 * 359.97438 * 26 3 2 28 28 H 1.08995 * 109.47053 * 300.00658 * 1 2 3 29 29 H 1.09004 * 109.46439 * 59.99989 * 1 2 3 30 30 H 1.08997 * 109.47275 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47089 * 239.99729 * 2 1 3 32 32 H 1.08999 * 109.47077 * 119.99721 * 2 1 3 33 33 H 1.08000 * 123.35157 * 0.05052 * 4 3 2 34 34 H 1.09002 * 109.88422 * 59.55346 * 9 8 6 35 35 H 1.09002 * 110.00913 * 298.46718 * 9 8 6 36 36 H 1.09005 * 109.46989 * 56.15791 * 12 10 9 37 37 H 1.09003 * 109.47080 * 296.16037 * 12 10 9 38 38 H 1.09002 * 109.47088 * 176.15811 * 12 10 9 39 39 H 0.97001 * 120.00085 * 334.99901 * 15 13 10 40 40 H 0.96997 * 119.99807 * 180.02562 * 19 18 16 41 41 H 1.08998 * 110.36790 * 322.93427 * 24 8 6 42 42 H 1.08997 * 110.36582 * 85.14916 * 24 8 6 43 43 H 1.08998 * 109.47504 * 180.02562 * 27 26 3 44 44 H 1.09006 * 109.47464 * 300.00759 * 27 26 3 45 45 H 1.09002 * 109.46950 * 60.00469 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3687 2.0842 -1.1562 5 6 2.8065 3.3604 -0.9392 6 6 3.2360 4.3004 -1.9786 7 8 3.1264 4.0005 -3.1531 8 7 3.7522 5.4966 -1.6339 9 6 3.8493 6.0257 -0.2656 10 6 4.5281 7.4086 -0.3563 11 1 3.7828 8.2038 -0.3721 12 6 5.5057 7.6089 0.8035 13 6 5.2867 7.3402 -1.7080 14 1 6.2455 6.8347 -1.5927 15 7 5.4659 8.6779 -2.2779 16 6 6.4982 8.9204 -3.1442 17 1 7.1807 8.1256 -3.4071 18 6 6.6683 10.1880 -3.6838 19 7 5.8370 11.1566 -3.3632 20 14 8.0771 10.5189 -4.8651 21 1 7.9442 9.6380 -6.0532 22 1 8.0385 11.9395 -5.2959 23 1 9.3681 10.2421 -4.1856 24 6 4.3123 6.4916 -2.5664 25 16 2.7649 3.6967 0.7862 26 6 2.1790 2.1305 1.1249 27 6 1.8681 1.6153 2.5065 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2970 1.6400 -2.1380 34 1 4.4518 5.3566 0.3488 35 1 2.8537 6.1290 0.1659 36 1 6.2340 6.7979 0.8090 37 1 4.9567 7.6107 1.7453 38 1 6.0228 8.5608 0.6826 39 1 4.8532 9.3918 -2.0416 40 1 5.9557 12.0423 -3.7405 41 1 4.8507 5.9945 -3.3732 42 1 3.5195 7.1205 -2.9713 43 1 2.0752 2.3944 3.2400 44 1 0.8161 1.3352 2.5616 45 1 2.4877 0.7436 2.7171 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939703913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:36 Heat of formation + Delta-G solvation = -5.303165 kcal Electronic energy + Delta-G solvation = -24808.769954 eV Core-core repulsion = 21338.491180 eV Total energy + Delta-G solvation = -3470.278774 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.93048 -38.90503 -37.41255 -34.20291 -33.07625 -32.38357 -31.77777 -30.76594 -28.44488 -26.77488 -26.20693 -24.21008 -24.14122 -22.85040 -21.43334 -20.06233 -19.67846 -18.33830 -17.89840 -17.20242 -16.22094 -16.04568 -15.51419 -14.92535 -14.57293 -14.34530 -14.15799 -13.96995 -13.64458 -13.50696 -13.19028 -13.04522 -13.01680 -12.80461 -12.78075 -12.57714 -12.26660 -11.97592 -11.79656 -11.68222 -11.57869 -11.25537 -11.18516 -11.07658 -10.89882 -10.70421 -10.48184 -10.28834 -10.00204 -9.86565 -9.73679 -9.02485 -8.81826 -8.51867 -8.31182 -7.09811 -5.85293 -3.16041 0.45337 1.39390 1.81277 2.25088 3.11991 3.30602 3.41523 3.46302 3.47098 4.50508 4.52912 4.55650 4.76162 4.78836 4.83509 4.99915 5.05277 5.07414 5.19992 5.22422 5.38319 5.40163 5.44702 5.52193 5.54029 5.60395 5.63926 5.67136 5.78209 5.79975 5.89664 5.94348 5.97473 6.14657 6.19361 6.22332 6.32620 6.37001 6.44981 6.55670 6.58489 6.85961 7.64076 7.69013 8.27623 8.32432 9.44217 9.96511 10.31750 11.36526 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026792 B = 0.002774 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.839349 B =10091.055117 C =10802.665734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.063 4.063 3 C -0.121 4.121 4 C -0.053 4.053 5 C -0.257 4.257 6 C 0.597 3.403 7 O -0.536 6.536 8 N -0.609 5.609 9 C 0.095 3.905 10 C -0.109 4.109 11 H 0.087 0.913 12 C -0.135 4.135 13 C 0.178 3.822 14 H 0.070 0.930 15 N -0.707 5.707 16 C -0.249 4.249 17 H 0.072 0.928 18 C -0.007 4.007 19 N -0.930 5.930 20 Si 0.909 3.091 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.082 3.918 25 S 0.215 5.785 26 C -0.219 4.219 27 C -0.081 4.081 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.149 0.851 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 -19.392 14.844 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.134 4.134 4 C -0.086 4.086 5 C -0.377 4.377 6 C 0.385 3.615 7 O -0.415 6.415 8 N -0.341 5.341 9 C -0.030 4.030 10 C -0.129 4.129 11 H 0.105 0.895 12 C -0.193 4.193 13 C 0.065 3.935 14 H 0.088 0.912 15 N -0.347 5.347 16 C -0.380 4.380 17 H 0.090 0.910 18 C -0.204 4.204 19 N -0.577 5.577 20 Si 0.739 3.261 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 C -0.043 4.043 25 S 0.486 5.514 26 C -0.338 4.338 27 C -0.139 4.139 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.167 0.833 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.222 0.778 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.712 -18.273 14.990 25.189 hybrid contribution 0.060 -0.814 -1.507 1.714 sum -8.653 -19.087 13.483 24.920 Atomic orbital electron populations 1.21730 0.94897 1.01529 1.02255 1.20218 0.95907 0.91380 1.02696 1.18586 1.05038 0.98352 0.91389 1.20555 0.96363 0.91980 0.99684 1.24537 1.15879 1.00275 0.97008 1.16607 0.77708 0.79960 0.87194 1.90825 1.56187 1.76391 1.18096 1.48348 1.59882 1.16516 1.09398 1.22233 1.00654 0.96356 0.83744 1.22481 0.98376 0.94415 0.97650 0.89463 1.21685 0.98456 1.02948 0.96185 1.21413 0.95093 0.87939 0.89018 0.91237 1.42265 1.34142 1.05054 1.53195 1.19207 1.04838 0.95088 1.18832 0.90987 1.24761 0.99086 0.95958 1.00587 1.69645 1.38470 1.01982 1.47604 0.86250 0.81859 0.76994 0.80977 1.21096 1.21639 1.21130 1.23525 0.97735 0.89401 0.93629 1.83402 1.59615 1.09360 0.99062 1.24362 1.07971 1.01317 1.00116 1.20327 1.02331 1.01217 0.90016 0.92703 0.92444 0.92449 0.91004 0.91132 0.83290 0.91004 0.91398 0.92798 0.93121 0.91089 0.77823 0.93276 0.90844 0.91247 0.91479 0.90584 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.67 16 2 C -0.06 -0.49 5.83 -27.88 -0.16 -0.65 16 3 C -0.12 -1.25 5.04 -106.45 -0.54 -1.79 16 4 C -0.05 -0.67 9.79 -40.43 -0.40 -1.07 16 5 C -0.26 -3.63 6.38 -36.79 -0.23 -3.87 16 6 C 0.60 10.51 7.80 -12.90 -0.10 10.41 16 7 O -0.54 -11.25 17.14 5.18 0.09 -11.16 16 8 N -0.61 -10.21 3.33 -171.97 -0.57 -10.78 16 9 C 0.09 1.29 4.78 -3.07 -0.01 1.27 16 10 C -0.11 -1.64 3.19 -88.79 -0.28 -1.92 16 11 H 0.09 1.34 8.00 -51.93 -0.42 0.93 16 12 C -0.14 -1.78 9.14 37.16 0.34 -1.44 16 13 C 0.18 3.39 3.17 -65.67 -0.21 3.18 16 14 H 0.07 1.35 8.00 -51.93 -0.42 0.94 16 15 N -0.71 -16.77 5.25 -51.24 -0.27 -17.04 16 16 C -0.25 -6.65 9.96 -15.06 -0.15 -6.80 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.93 -27.20 13.06 55.49 0.72 -26.48 16 20 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.08 1.57 6.59 -2.42 -0.02 1.56 16 25 S 0.22 2.30 18.40 -107.50 -1.98 0.32 16 26 C -0.22 -2.10 6.28 -35.86 -0.23 -2.33 16 27 C -0.08 -0.53 9.44 36.00 0.34 -0.19 16 28 H 0.05 0.37 7.40 -51.93 -0.38 -0.01 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 32 H 0.07 0.47 7.45 -51.93 -0.39 0.08 16 33 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.07 0.87 6.35 -51.92 -0.33 0.54 16 35 H 0.07 0.82 7.14 -51.93 -0.37 0.45 16 36 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.39 9.71 7.76 -40.82 -0.32 9.39 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.07 1.52 8.09 -51.93 -0.42 1.10 16 42 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 44 H 0.08 0.43 7.41 -51.93 -0.38 0.05 16 45 H 0.08 0.43 7.92 -51.93 -0.41 0.02 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -31.25 375.58 -9.93 -41.17 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.18 Total: 5.92 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -1.38 Total: -4.61 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.12 Total: -54.29 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.98 Total: 0.32 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.25 -9.93 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939703913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.871 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds