Wall clock time and date at job start Tue Mar 31 2020 13:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47432 * 2 1 4 4 C 1.37477 * 122.44716 * 265.26175 * 3 2 1 5 5 C 1.36648 * 113.29498 * 180.24147 * 4 3 2 6 6 C 1.46580 * 125.45903 * 179.80447 * 5 4 3 7 7 O 1.21709 * 119.99724 * 5.46448 * 6 5 4 8 8 N 1.34775 * 120.00161 * 185.46273 * 6 5 4 9 9 C 1.47020 * 125.64870 * 355.20173 * 8 6 5 10 10 C 1.54317 * 107.27089 * 178.97388 * 9 8 6 11 11 H 1.08997 * 110.72000 * 96.35012 * 10 9 8 12 12 C 1.53000 * 110.72162 * 219.44111 * 10 9 8 13 13 C 1.55153 * 103.10234 * 337.89486 * 10 9 8 14 14 H 1.09003 * 111.00353 * 277.33592 * 13 10 9 15 15 N 1.46508 * 111.00324 * 153.48861 * 13 10 9 16 16 C 1.36933 * 120.00019 * 155.00248 * 15 13 10 17 17 H 1.08003 * 120.00323 * 359.97438 * 16 15 13 18 18 C 1.38813 * 120.00129 * 180.02562 * 16 15 13 19 19 N 1.31616 * 119.99816 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00122 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47064 * 59.99369 * 20 18 16 22 22 H 1.48497 * 109.47120 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46734 * 299.99522 * 20 18 16 24 24 C 1.47424 * 125.64706 * 175.23849 * 8 6 5 25 25 S 1.75833 * 109.08095 * 359.54311 * 5 4 3 26 26 C 1.33815 * 122.45024 * 85.00126 * 3 2 1 27 27 C 1.50693 * 124.52414 * 359.97438 * 26 3 2 28 28 H 1.08995 * 109.47053 * 300.00658 * 1 2 3 29 29 H 1.09004 * 109.46439 * 59.99989 * 1 2 3 30 30 H 1.08997 * 109.47275 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47089 * 239.99729 * 2 1 3 32 32 H 1.08999 * 109.47077 * 119.99721 * 2 1 3 33 33 H 1.08000 * 123.35157 * 0.05052 * 4 3 2 34 34 H 1.09002 * 109.88422 * 59.55346 * 9 8 6 35 35 H 1.09002 * 110.00913 * 298.46718 * 9 8 6 36 36 H 1.09005 * 109.46989 * 56.15791 * 12 10 9 37 37 H 1.09003 * 109.47080 * 296.16037 * 12 10 9 38 38 H 1.09002 * 109.47088 * 176.15811 * 12 10 9 39 39 H 0.97001 * 120.00085 * 334.99901 * 15 13 10 40 40 H 0.96997 * 119.99807 * 180.02562 * 19 18 16 41 41 H 1.08998 * 110.36790 * 322.93427 * 24 8 6 42 42 H 1.08997 * 110.36582 * 85.14916 * 24 8 6 43 43 H 1.08998 * 109.47504 * 180.02562 * 27 26 3 44 44 H 1.09006 * 109.47464 * 300.00759 * 27 26 3 45 45 H 1.09002 * 109.46950 * 60.00469 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3687 2.0842 -1.1562 5 6 2.8065 3.3604 -0.9392 6 6 3.2360 4.3004 -1.9786 7 8 3.1264 4.0005 -3.1531 8 7 3.7522 5.4966 -1.6339 9 6 3.8493 6.0257 -0.2656 10 6 4.5281 7.4086 -0.3563 11 1 3.7828 8.2038 -0.3721 12 6 5.5057 7.6089 0.8035 13 6 5.2867 7.3402 -1.7080 14 1 6.2455 6.8347 -1.5927 15 7 5.4659 8.6779 -2.2779 16 6 6.4982 8.9204 -3.1442 17 1 7.1807 8.1256 -3.4071 18 6 6.6683 10.1880 -3.6838 19 7 5.8370 11.1566 -3.3632 20 14 8.0771 10.5189 -4.8651 21 1 7.9442 9.6380 -6.0532 22 1 8.0385 11.9395 -5.2959 23 1 9.3681 10.2421 -4.1856 24 6 4.3123 6.4916 -2.5664 25 16 2.7649 3.6967 0.7862 26 6 2.1790 2.1305 1.1249 27 6 1.8681 1.6153 2.5065 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2970 1.6400 -2.1380 34 1 4.4518 5.3566 0.3488 35 1 2.8537 6.1290 0.1659 36 1 6.2340 6.7979 0.8090 37 1 4.9567 7.6107 1.7453 38 1 6.0228 8.5608 0.6826 39 1 4.8532 9.3918 -2.0416 40 1 5.9557 12.0423 -3.7405 41 1 4.8507 5.9945 -3.3732 42 1 3.5195 7.1205 -2.9713 43 1 2.0752 2.3944 3.2400 44 1 0.8161 1.3352 2.5616 45 1 2.4877 0.7436 2.7171 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939703913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:35 Heat of formation + Delta-G solvation = -23.581361 kcal Electronic energy + Delta-G solvation = -24809.562556 eV Core-core repulsion = 21338.491180 eV Total energy + Delta-G solvation = -3471.071376 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26962 -39.84515 -38.77541 -36.01338 -34.09395 -33.68059 -32.56915 -32.35365 -29.90242 -27.91197 -27.31760 -25.93297 -24.81730 -24.08943 -22.73959 -21.48939 -20.78809 -19.43378 -19.08751 -18.94101 -17.59362 -17.10986 -16.82420 -16.39537 -15.82919 -15.44513 -15.36992 -15.06791 -14.86373 -14.62973 -14.51297 -14.31623 -14.11089 -14.07825 -13.58196 -13.39552 -13.25405 -13.05712 -12.93060 -12.86654 -12.81987 -12.62523 -12.45102 -12.27055 -12.23731 -12.06986 -11.83826 -11.76025 -11.55533 -11.28794 -11.22902 -10.96885 -9.99899 -9.48338 -9.32724 -9.08802 -7.97998 -5.27926 -0.50952 0.48576 0.94458 1.30550 1.47007 1.49504 1.55162 1.79339 2.07519 2.54329 3.29389 3.44258 3.47492 3.78514 3.86178 3.98992 4.07945 4.10650 4.18554 4.24860 4.38050 4.41122 4.47983 4.53430 4.56911 4.64122 4.71185 4.78728 4.81162 4.85976 4.92782 4.98489 5.03547 5.09860 5.12717 5.15373 5.20536 5.32172 5.32868 5.46667 5.47529 5.51589 5.57229 6.23055 6.36409 6.92081 7.30902 8.00740 8.26081 9.24309 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026792 B = 0.002774 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.839349 B =10091.055117 C =10802.665734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.061 4.061 3 C -0.135 4.135 4 C -0.050 4.050 5 C -0.302 4.302 6 C 0.593 3.407 7 O -0.586 6.586 8 N -0.610 5.610 9 C 0.098 3.902 10 C -0.099 4.099 11 H 0.084 0.916 12 C -0.130 4.130 13 C 0.175 3.825 14 H 0.067 0.933 15 N -0.717 5.717 16 C -0.248 4.248 17 H 0.074 0.926 18 C -0.066 4.066 19 N -0.963 5.963 20 Si 0.969 3.031 21 H -0.283 1.283 22 H -0.294 1.294 23 H -0.275 1.275 24 C 0.091 3.909 25 S 0.255 5.745 26 C -0.201 4.201 27 C -0.084 4.084 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.378 0.622 40 H 0.253 0.747 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.481 -21.435 18.198 29.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 C -0.147 4.147 4 C -0.084 4.084 5 C -0.422 4.422 6 C 0.383 3.617 7 O -0.469 6.469 8 N -0.342 5.342 9 C -0.025 4.025 10 C -0.119 4.119 11 H 0.102 0.898 12 C -0.187 4.187 13 C 0.064 3.936 14 H 0.085 0.915 15 N -0.355 5.355 16 C -0.380 4.380 17 H 0.092 0.908 18 C -0.259 4.259 19 N -0.613 5.613 20 Si 0.798 3.202 21 H -0.210 1.210 22 H -0.220 1.220 23 H -0.201 1.201 24 C -0.035 4.035 25 S 0.526 5.474 26 C -0.320 4.320 27 C -0.143 4.143 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.155 0.845 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.211 0.789 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.023 -20.353 18.392 28.878 hybrid contribution 0.084 -0.327 -2.463 2.486 sum -8.939 -20.679 15.929 27.591 Atomic orbital electron populations 1.21722 0.94327 1.02425 1.01756 1.20280 0.96319 0.89812 1.03613 1.18750 1.05625 0.99703 0.90599 1.20717 0.95522 0.91807 1.00374 1.24247 1.19079 1.00254 0.98613 1.17141 0.76838 0.80205 0.87481 1.90777 1.58329 1.77405 1.20439 1.48344 1.59565 1.16085 1.10164 1.22404 1.02271 0.95556 0.82276 1.22400 0.98266 0.95372 0.95839 0.89773 1.21658 0.98308 1.02054 0.96696 1.21534 0.95386 0.85648 0.91044 0.91484 1.42343 1.33378 1.06599 1.53174 1.19543 1.05012 0.94985 1.18413 0.90824 1.25499 1.01652 0.96055 1.02713 1.69784 1.40286 1.02074 1.49159 0.85284 0.79551 0.76334 0.79019 1.20989 1.22039 1.20062 1.23128 0.97019 0.89680 0.93663 1.83036 1.59031 1.09919 0.95450 1.24852 1.05284 1.00363 1.01522 1.20530 1.03592 1.02230 0.87902 0.92107 0.94025 0.90900 0.91183 0.89168 0.84462 0.88675 0.89108 0.91821 0.89624 0.93339 0.78858 0.93850 0.93331 0.93208 0.90127 0.89075 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.89 71.98 0.71 -0.97 16 2 C -0.06 -0.79 5.83 29.85 0.17 -0.62 16 3 C -0.14 -2.51 5.04 -21.05 -0.11 -2.61 16 4 C -0.05 -1.25 9.79 21.72 0.21 -1.04 16 5 C -0.30 -8.41 6.38 24.08 0.15 -8.26 16 6 C 0.59 21.48 7.80 86.42 0.67 22.16 16 7 O -0.59 -26.16 17.14 -4.38 -0.08 -26.24 16 8 N -0.61 -20.71 3.33 -816.19 -2.72 -23.43 16 9 C 0.10 2.48 4.78 86.73 0.41 2.90 16 10 C -0.10 -2.86 3.19 -9.61 -0.03 -2.89 16 11 H 0.08 2.52 8.00 -2.39 -0.02 2.50 16 12 C -0.13 -3.11 9.14 71.98 0.66 -2.45 16 13 C 0.18 6.77 3.17 46.45 0.15 6.92 16 14 H 0.07 2.63 8.00 -2.39 -0.02 2.61 16 15 N -0.72 -34.91 5.25 -316.02 -1.66 -36.57 16 16 C -0.25 -13.53 9.96 84.03 0.84 -12.69 16 17 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 18 C -0.07 -3.74 5.50 84.86 0.47 -3.28 16 19 N -0.96 -57.74 13.06 21.65 0.28 -57.45 16 20 Si 0.97 45.96 29.55 68.60 2.03 47.98 16 21 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 24 C 0.09 3.66 6.59 86.93 0.57 4.24 16 25 S 0.26 4.69 18.40 -56.49 -1.04 3.65 16 26 C -0.20 -3.15 6.28 24.68 0.15 -3.00 16 27 C -0.08 -0.70 9.44 71.23 0.67 -0.02 16 28 H 0.06 0.63 7.40 -2.39 -0.02 0.61 16 29 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.94 8.11 -2.39 -0.02 0.92 16 32 H 0.09 0.84 7.45 -2.39 -0.02 0.82 16 33 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 34 H 0.10 2.00 6.35 -2.39 -0.02 1.99 16 35 H 0.09 1.94 7.14 -2.39 -0.02 1.92 16 36 H 0.06 1.41 8.12 -2.38 -0.02 1.39 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.38 19.60 7.76 -92.71 -0.72 18.88 16 40 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 41 H 0.05 2.15 8.09 -2.39 -0.02 2.13 16 42 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.08 0.50 8.11 -2.39 -0.02 0.48 16 44 H 0.09 0.57 7.41 -2.38 -0.02 0.56 16 45 H 0.09 0.56 7.92 -2.39 -0.02 0.54 16 Total: -1.00 -71.05 375.58 2.80 -68.25 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.27 Total: 25.43 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 5.71 Total: -1.62 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -4.09 Total: -117.45 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.08 Total: -26.24 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.04 Total: 3.65 kcal Total: -71.05 2.80 -68.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939703913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.666 kcal (2) G-P(sol) polarization free energy of solvation -71.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds