Wall clock time and date at job start Tue Mar 31 2020 13:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50709 * 109.46731 * 2 1 4 4 C 1.33818 * 124.52324 * 89.99743 * 3 2 1 5 5 C 1.37464 * 115.09837 * 179.70401 * 4 3 2 6 6 C 1.36652 * 113.30105 * 0.49549 * 5 4 3 7 7 C 1.46578 * 125.46168 * 179.79867 * 6 5 4 8 8 O 1.21701 * 119.99855 * 359.71924 * 7 6 5 9 9 N 1.34777 * 120.00038 * 179.71439 * 7 6 5 10 10 C 1.46501 * 119.99862 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.46040 * 324.97609 * 10 9 7 12 12 C 1.53040 * 109.44910 * 84.94362 * 10 9 7 13 13 C 1.53184 * 109.31449 * 181.37374 * 12 10 9 14 14 N 1.46926 * 108.77920 * 305.36598 * 13 12 10 15 15 C 1.36936 * 120.62960 * 233.58383 * 14 13 12 16 16 H 1.07999 * 120.00324 * 27.68191 * 15 14 13 17 17 C 1.38809 * 119.99752 * 207.67841 * 15 14 13 18 18 N 1.31626 * 120.00360 * 17.37988 * 17 15 14 19 19 Si 1.86803 * 120.00115 * 197.38159 * 17 15 14 20 20 H 1.48497 * 109.46878 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47288 * 119.99888 * 19 17 15 22 22 H 1.48505 * 109.46898 * 240.00241 * 19 17 15 23 23 C 1.46925 * 118.73816 * 53.60652 * 14 13 12 24 24 C 1.53042 * 109.45841 * 205.00326 * 10 9 7 25 25 H 1.09006 * 109.49699 * 298.57858 * 24 10 9 26 26 C 1.52998 * 109.52473 * 58.66213 * 24 10 9 27 27 S 1.70610 * 124.51937 * 269.97090 * 3 2 1 28 28 H 1.09000 * 109.47344 * 60.00840 * 1 2 3 29 29 H 1.09008 * 109.46675 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47364 * 300.00007 * 1 2 3 31 31 H 1.08991 * 109.47724 * 239.99651 * 2 1 3 32 32 H 1.09000 * 109.47344 * 119.99160 * 2 1 3 33 33 H 1.07994 * 122.44642 * 359.97438 * 4 3 2 34 34 H 1.08003 * 123.35582 * 180.29370 * 5 4 3 35 35 H 0.97002 * 119.99678 * 0.02562 * 9 7 6 36 36 H 1.09008 * 109.49941 * 61.42440 * 12 10 9 37 37 H 1.09005 * 109.49757 * 301.33222 * 12 10 9 38 38 H 1.08997 * 109.59040 * 185.57286 * 13 12 10 39 39 H 1.09006 * 109.58286 * 65.15621 * 13 12 10 40 40 H 0.96994 * 119.99972 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.58952 * 66.17709 * 23 14 13 42 42 H 1.08997 * 109.58951 * 186.60515 * 23 14 13 43 43 H 1.09003 * 109.47250 * 179.85830 * 26 24 10 44 44 H 1.09003 * 109.47132 * 299.85162 * 26 24 10 45 45 H 1.08999 * 109.47404 * 59.85390 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2849 2.1360 1.1025 5 6 2.7430 3.4124 0.8774 6 6 2.8470 3.7233 -0.4492 7 6 3.3017 5.0082 -0.9884 8 8 3.6201 5.9070 -0.2322 9 7 3.3675 5.1942 -2.3217 10 6 3.8215 6.4786 -2.8605 11 1 3.4811 7.2854 -2.2115 12 6 5.3502 6.4904 -2.9297 13 6 5.8229 7.8471 -3.4612 14 7 5.1587 8.1095 -4.7453 15 6 5.8920 8.4188 -5.8596 16 1 6.9051 8.0577 -5.9569 17 6 5.3330 9.1966 -6.8644 18 7 4.2574 9.9147 -6.6194 19 14 6.1071 9.2241 -8.5642 20 1 7.2986 8.3380 -8.5798 21 1 5.1204 8.7453 -9.5653 22 1 6.5182 10.6114 -8.8985 23 6 3.6929 8.0342 -4.8108 24 6 3.2441 6.6753 -4.2641 25 1 3.6040 5.8825 -4.9200 26 6 1.7161 6.6302 -4.1995 27 16 2.3551 2.3322 -1.4057 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8898 32 1 1.8934 -0.5137 0.8900 33 1 2.1437 1.7378 2.0964 34 1 2.9925 4.1022 1.6701 35 1 3.1135 4.4778 -2.9244 36 1 5.6904 5.6993 -3.5982 37 1 5.7608 6.3269 -1.9333 38 1 6.9030 7.8268 -3.6060 39 1 5.5624 8.6296 -2.7484 40 1 3.8671 10.4584 -7.3214 41 1 3.2586 8.8318 -4.2081 42 1 3.3676 8.1371 -5.8460 43 1 1.3057 6.7729 -5.1992 44 1 1.3973 5.6631 -3.8105 45 1 1.3567 7.4224 -3.5427 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942315143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:47 Heat of formation + Delta-G solvation = -1.141262 kcal Electronic energy + Delta-G solvation = -24937.720957 eV Core-core repulsion = 21467.622657 eV Total energy + Delta-G solvation = -3470.098300 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -39.87952 -38.36210 -37.39364 -34.52129 -34.04915 -32.35613 -31.84313 -29.79923 -28.67605 -26.02295 -25.73925 -24.67574 -22.76439 -22.40289 -21.01044 -20.82353 -19.81534 -18.85121 -17.90052 -16.81547 -16.28592 -15.78915 -15.18916 -14.97458 -14.73404 -14.53945 -14.13407 -13.84121 -13.62582 -13.61851 -13.17104 -13.08268 -12.87327 -12.62699 -12.50186 -12.20259 -12.03080 -11.88276 -11.50151 -11.46150 -11.30577 -11.08436 -11.07078 -10.74191 -10.66295 -10.35272 -10.19018 -10.00001 -9.97232 -9.70904 -9.47757 -8.94513 -8.80861 -8.66099 -8.45514 -6.69099 -5.79739 -3.21437 0.34150 1.24647 1.67231 2.23304 3.28009 3.30331 3.37147 3.44866 3.47094 4.30119 4.49178 4.61532 4.83280 4.84687 5.02018 5.17845 5.23502 5.31610 5.32618 5.42033 5.45690 5.52809 5.57205 5.68320 5.76174 5.79507 5.87628 5.95855 6.08742 6.13509 6.16822 6.23560 6.35150 6.45969 6.50614 6.59182 6.68758 6.79548 6.92719 6.99582 7.33128 7.58253 7.68414 7.80208 8.30460 8.44124 9.20434 9.83691 10.40592 11.29084 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.002714 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.783384 B =10315.570342 C =10707.595520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.196 4.196 4 C -0.152 4.152 5 C -0.058 4.058 6 C -0.259 4.259 7 C 0.585 3.415 8 O -0.531 6.531 9 N -0.716 5.716 10 C 0.158 3.842 11 H 0.084 0.916 12 C -0.141 4.141 13 C 0.147 3.853 14 N -0.593 5.593 15 C -0.251 4.251 16 H 0.067 0.933 17 C 0.001 3.999 18 N -0.902 5.902 19 Si 0.901 3.099 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.181 3.819 24 C -0.123 4.123 25 H 0.068 0.932 26 C -0.140 4.140 27 S 0.198 5.802 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.392 0.608 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.021 0.979 40 H 0.253 0.747 41 H 0.021 0.979 42 H 0.093 0.907 43 H 0.056 0.944 44 H 0.041 0.959 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.912 -19.987 12.189 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.316 4.316 4 C -0.183 4.183 5 C -0.091 4.091 6 C -0.380 4.380 7 C 0.371 3.629 8 O -0.410 6.410 9 N -0.365 5.365 10 C 0.055 3.945 11 H 0.102 0.898 12 C -0.181 4.181 13 C 0.021 3.979 14 N -0.316 5.316 15 C -0.380 4.380 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.055 3.945 24 C -0.144 4.144 25 H 0.086 0.914 26 C -0.198 4.198 27 S 0.466 5.534 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.226 0.774 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.111 0.889 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.837 -19.481 11.023 23.716 hybrid contribution 0.296 -0.074 0.472 0.562 sum -7.540 -19.555 11.495 23.904 Atomic orbital electron populations 1.21807 0.94046 1.02153 1.02683 1.20148 0.96387 0.89408 1.03494 1.24247 1.07430 1.02075 0.97848 1.19938 1.04683 0.94206 0.99492 1.20747 0.96827 0.96192 0.95292 1.24753 1.15731 0.99473 0.98024 1.16966 0.77816 0.85444 0.82697 1.90828 1.49481 1.42588 1.58054 1.46214 1.67215 1.17398 1.05714 1.21123 0.94504 0.83738 0.95174 0.89750 1.22405 0.94688 1.00809 1.00194 1.20878 0.96441 0.92315 0.88314 1.44118 1.01819 1.80837 1.04781 1.19231 0.98057 1.25448 0.95299 0.91572 1.25043 0.98561 0.96413 0.99692 1.70039 1.23736 1.28927 1.31989 0.86237 0.78639 0.77350 0.84646 1.20271 1.21573 1.21738 1.20810 0.83406 0.88901 1.01426 1.22183 0.94511 1.03280 0.94393 0.91394 1.21734 0.95934 1.00476 1.01623 1.83009 1.60016 1.02682 1.07737 0.92301 0.91886 0.92167 0.90607 0.89849 0.84011 0.83005 0.77404 0.92256 0.92572 0.92484 0.96110 0.93657 0.96063 0.88899 0.92480 0.93966 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.89 37.16 0.37 -0.46 16 2 C -0.06 -0.34 6.37 -27.88 -0.18 -0.51 16 3 C -0.20 -1.69 5.53 -35.86 -0.20 -1.89 16 4 C -0.15 -1.40 9.99 -41.42 -0.41 -1.81 16 5 C -0.06 -0.66 10.01 -40.44 -0.40 -1.07 16 6 C -0.26 -3.31 6.45 -36.79 -0.24 -3.55 16 7 C 0.59 9.29 7.75 -12.90 -0.10 9.19 16 8 O -0.53 -10.29 16.50 5.19 0.09 -10.21 16 9 N -0.72 -10.75 4.36 -55.11 -0.24 -10.99 16 10 C 0.16 2.80 1.88 -67.89 -0.13 2.68 16 11 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 12 C -0.14 -2.62 5.65 -26.62 -0.15 -2.77 16 13 C 0.15 3.20 6.51 -3.71 -0.02 3.17 16 14 N -0.59 -14.81 2.99 -172.33 -0.52 -15.33 16 15 C -0.25 -6.83 9.59 -15.06 -0.14 -6.98 16 16 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 17 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 18 N -0.90 -25.94 11.19 55.49 0.62 -25.32 16 19 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C 0.18 4.22 4.59 -3.71 -0.02 4.21 16 24 C -0.12 -2.25 2.46 -90.50 -0.22 -2.47 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 26 C -0.14 -2.19 9.03 37.16 0.34 -1.86 16 27 S 0.20 1.91 22.10 -107.50 -2.38 -0.47 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.15 1.70 8.06 -52.48 -0.42 1.28 16 35 H 0.39 5.02 7.42 -40.82 -0.30 4.72 16 36 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.04 0.57 7.37 -51.93 -0.38 0.18 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 375.01 15.07 5.65 5.65 Total: -1.00 -31.06 375.01 -10.68 -41.74 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.27 Total: 2.61 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -1.60 Total: -4.17 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.14 Total: -51.64 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.38 Total: -0.47 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.06 -10.68 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942315143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.594 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds