Wall clock time and date at job start Tue Mar 31 2020 13:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50709 * 109.46731 * 2 1 4 4 C 1.33818 * 124.52324 * 89.99743 * 3 2 1 5 5 C 1.37464 * 115.09837 * 179.70401 * 4 3 2 6 6 C 1.36652 * 113.30105 * 0.49549 * 5 4 3 7 7 C 1.46578 * 125.46168 * 179.79867 * 6 5 4 8 8 O 1.21701 * 119.99855 * 359.71924 * 7 6 5 9 9 N 1.34777 * 120.00038 * 179.71439 * 7 6 5 10 10 C 1.46501 * 119.99862 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.46040 * 324.97609 * 10 9 7 12 12 C 1.53040 * 109.44910 * 84.94362 * 10 9 7 13 13 C 1.53184 * 109.31449 * 181.37374 * 12 10 9 14 14 N 1.46926 * 108.77920 * 305.36598 * 13 12 10 15 15 C 1.36936 * 120.62960 * 233.58383 * 14 13 12 16 16 H 1.07999 * 120.00324 * 27.68191 * 15 14 13 17 17 C 1.38809 * 119.99752 * 207.67841 * 15 14 13 18 18 N 1.31626 * 120.00360 * 17.37988 * 17 15 14 19 19 Si 1.86803 * 120.00115 * 197.38159 * 17 15 14 20 20 H 1.48497 * 109.46878 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47288 * 119.99888 * 19 17 15 22 22 H 1.48505 * 109.46898 * 240.00241 * 19 17 15 23 23 C 1.46925 * 118.73816 * 53.60652 * 14 13 12 24 24 C 1.53042 * 109.45841 * 205.00326 * 10 9 7 25 25 H 1.09006 * 109.49699 * 298.57858 * 24 10 9 26 26 C 1.52998 * 109.52473 * 58.66213 * 24 10 9 27 27 S 1.70610 * 124.51937 * 269.97090 * 3 2 1 28 28 H 1.09000 * 109.47344 * 60.00840 * 1 2 3 29 29 H 1.09008 * 109.46675 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47364 * 300.00007 * 1 2 3 31 31 H 1.08991 * 109.47724 * 239.99651 * 2 1 3 32 32 H 1.09000 * 109.47344 * 119.99160 * 2 1 3 33 33 H 1.07994 * 122.44642 * 359.97438 * 4 3 2 34 34 H 1.08003 * 123.35582 * 180.29370 * 5 4 3 35 35 H 0.97002 * 119.99678 * 0.02562 * 9 7 6 36 36 H 1.09008 * 109.49941 * 61.42440 * 12 10 9 37 37 H 1.09005 * 109.49757 * 301.33222 * 12 10 9 38 38 H 1.08997 * 109.59040 * 185.57286 * 13 12 10 39 39 H 1.09006 * 109.58286 * 65.15621 * 13 12 10 40 40 H 0.96994 * 119.99972 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.58952 * 66.17709 * 23 14 13 42 42 H 1.08997 * 109.58951 * 186.60515 * 23 14 13 43 43 H 1.09003 * 109.47250 * 179.85830 * 26 24 10 44 44 H 1.09003 * 109.47132 * 299.85162 * 26 24 10 45 45 H 1.08999 * 109.47404 * 59.85390 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2849 2.1360 1.1025 5 6 2.7430 3.4124 0.8774 6 6 2.8470 3.7233 -0.4492 7 6 3.3017 5.0082 -0.9884 8 8 3.6201 5.9070 -0.2322 9 7 3.3675 5.1942 -2.3217 10 6 3.8215 6.4786 -2.8605 11 1 3.4811 7.2854 -2.2115 12 6 5.3502 6.4904 -2.9297 13 6 5.8229 7.8471 -3.4612 14 7 5.1587 8.1095 -4.7453 15 6 5.8920 8.4188 -5.8596 16 1 6.9051 8.0577 -5.9569 17 6 5.3330 9.1966 -6.8644 18 7 4.2574 9.9147 -6.6194 19 14 6.1071 9.2241 -8.5642 20 1 7.2986 8.3380 -8.5798 21 1 5.1204 8.7453 -9.5653 22 1 6.5182 10.6114 -8.8985 23 6 3.6929 8.0342 -4.8108 24 6 3.2441 6.6753 -4.2641 25 1 3.6040 5.8825 -4.9200 26 6 1.7161 6.6302 -4.1995 27 16 2.3551 2.3322 -1.4057 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8898 32 1 1.8934 -0.5137 0.8900 33 1 2.1437 1.7378 2.0964 34 1 2.9925 4.1022 1.6701 35 1 3.1135 4.4778 -2.9244 36 1 5.6904 5.6993 -3.5982 37 1 5.7608 6.3269 -1.9333 38 1 6.9030 7.8268 -3.6060 39 1 5.5624 8.6296 -2.7484 40 1 3.8671 10.4584 -7.3214 41 1 3.2586 8.8318 -4.2081 42 1 3.3676 8.1371 -5.8460 43 1 1.3057 6.7729 -5.1992 44 1 1.3973 5.6631 -3.8105 45 1 1.3567 7.4224 -3.5427 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942315143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:46 Heat of formation + Delta-G solvation = -18.456803 kcal Electronic energy + Delta-G solvation = -24938.471816 eV Core-core repulsion = 21467.622657 eV Total energy + Delta-G solvation = -3470.849159 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.19012 -39.49220 -38.65203 -36.18707 -34.68381 -33.99834 -33.53355 -31.42712 -29.66985 -27.58205 -27.13009 -25.94949 -24.09439 -23.21274 -22.55671 -22.17842 -21.25620 -20.05158 -18.99560 -18.60834 -17.44323 -16.93518 -16.72189 -16.20760 -16.07623 -15.57272 -15.45714 -15.16278 -14.89506 -14.78987 -14.63609 -14.42767 -14.17114 -13.80935 -13.57357 -13.30762 -13.19087 -12.95609 -12.89871 -12.81571 -12.57630 -12.46318 -12.40514 -12.07095 -12.03678 -11.85781 -11.77929 -11.68609 -11.59439 -11.32965 -11.08103 -10.57661 -10.16209 -9.63945 -9.53488 -8.72698 -7.88420 -5.33924 -0.51579 0.45176 0.89623 1.38879 1.47223 1.49174 1.59970 2.06094 2.16389 2.51273 3.26711 3.59196 3.68569 3.72258 3.85666 4.00233 4.15345 4.16566 4.30916 4.34878 4.41960 4.49635 4.54240 4.64092 4.69432 4.80049 4.81584 4.91053 4.92887 4.96215 5.04748 5.06226 5.09033 5.15368 5.21410 5.27391 5.30837 5.36282 5.43532 5.45879 5.48362 5.64897 5.71581 6.37727 6.43927 7.09575 7.13339 7.82390 8.35698 9.18781 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.002714 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.783384 B =10315.570342 C =10707.595520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.057 4.057 3 C -0.182 4.182 4 C -0.162 4.162 5 C -0.054 4.054 6 C -0.301 4.301 7 C 0.586 3.414 8 O -0.576 6.576 9 N -0.706 5.706 10 C 0.169 3.831 11 H 0.060 0.940 12 C -0.126 4.126 13 C 0.145 3.855 14 N -0.610 5.610 15 C -0.263 4.263 16 H 0.068 0.932 17 C -0.049 4.049 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.267 1.267 21 H -0.287 1.287 22 H -0.294 1.294 23 C 0.189 3.811 24 C -0.108 4.108 25 H 0.075 0.925 26 C -0.133 4.133 27 S 0.229 5.771 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.166 0.834 34 H 0.146 0.854 35 H 0.406 0.594 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.008 0.992 40 H 0.251 0.749 41 H -0.007 1.007 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.459 -23.496 12.280 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.302 4.302 4 C -0.191 4.191 5 C -0.088 4.088 6 C -0.421 4.421 7 C 0.374 3.626 8 O -0.458 6.458 9 N -0.356 5.356 10 C 0.065 3.935 11 H 0.078 0.922 12 C -0.167 4.167 13 C 0.019 3.981 14 N -0.333 5.333 15 C -0.393 4.393 16 H 0.085 0.915 17 C -0.245 4.245 18 N -0.581 5.581 19 Si 0.796 3.204 20 H -0.191 1.191 21 H -0.213 1.213 22 H -0.221 1.221 23 C 0.062 3.938 24 C -0.129 4.129 25 H 0.093 0.907 26 C -0.191 4.191 27 S 0.498 5.502 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.184 0.816 34 H 0.163 0.837 35 H 0.242 0.758 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.026 0.974 40 H 0.060 0.940 41 H 0.011 0.989 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.388 -23.037 11.111 26.917 hybrid contribution 0.450 0.957 0.537 1.186 sum -7.938 -22.080 11.648 26.196 Atomic orbital electron populations 1.21814 0.93491 1.03118 1.02251 1.20317 0.96716 0.87659 1.04911 1.24714 1.05222 1.03040 0.97197 1.20102 1.04842 0.93236 1.00946 1.20934 0.95952 0.97118 0.94795 1.24471 1.18904 0.99546 0.99186 1.17360 0.76781 0.86159 0.82273 1.90798 1.51546 1.44472 1.58955 1.45920 1.67083 1.16582 1.05970 1.20733 0.93855 0.84578 0.94350 0.92217 1.22210 0.95296 0.98900 1.00249 1.20957 0.96553 0.93672 0.86942 1.44381 1.02445 1.81052 1.05403 1.19543 0.98393 1.25144 0.96181 0.91455 1.25809 0.99291 0.96289 1.03096 1.70195 1.25192 1.29828 1.32837 0.85195 0.78059 0.77022 0.80079 1.19100 1.21341 1.22135 1.20608 0.82725 0.90952 0.99467 1.21920 0.96415 1.00145 0.94413 0.90677 1.21687 0.93644 1.01853 1.01950 1.82839 1.59132 1.00855 1.07401 0.92947 0.90300 0.92429 0.89540 0.88134 0.81618 0.83658 0.75764 0.91398 0.92149 0.92186 0.97448 0.93993 0.98912 0.91647 0.92088 0.91021 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 71.98 0.71 -0.44 16 2 C -0.06 -0.47 6.37 29.85 0.19 -0.28 16 3 C -0.18 -2.56 5.53 24.68 0.14 -2.42 16 4 C -0.16 -2.54 9.99 21.08 0.21 -2.33 16 5 C -0.05 -1.17 10.01 21.72 0.22 -0.96 16 6 C -0.30 -7.36 6.45 24.08 0.16 -7.20 16 7 C 0.59 18.49 7.75 86.42 0.67 19.16 16 8 O -0.58 -22.88 16.50 -4.35 -0.07 -22.95 16 9 N -0.71 -20.58 4.36 -446.47 -1.95 -22.53 16 10 C 0.17 6.04 1.88 45.02 0.08 6.13 16 11 H 0.06 2.47 7.58 -2.39 -0.02 2.45 16 12 C -0.13 -4.71 5.65 30.67 0.17 -4.54 16 13 C 0.14 6.44 6.51 86.36 0.56 7.00 16 14 N -0.61 -31.21 2.99 -699.12 -2.09 -33.30 16 15 C -0.26 -14.51 9.59 84.03 0.81 -13.70 16 16 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 17 C -0.05 -2.76 4.91 84.86 0.42 -2.34 16 18 N -0.93 -55.25 11.19 21.65 0.24 -55.00 16 19 Si 0.97 44.63 29.59 68.60 2.03 46.66 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 C 0.19 9.11 4.59 86.36 0.40 9.51 16 24 C -0.11 -3.96 2.46 -10.72 -0.03 -3.99 16 25 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 26 C -0.13 -4.08 9.03 71.98 0.65 -3.43 16 27 S 0.23 3.83 22.10 -56.49 -1.25 2.59 16 28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 34 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.41 9.60 7.42 -92.71 -0.69 8.91 16 36 H 0.07 2.42 8.14 -2.38 -0.02 2.41 16 37 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 38 H 0.06 2.58 7.93 -2.39 -0.02 2.56 16 39 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 40 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 41 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 42 H 0.07 3.52 6.04 -2.39 -0.01 3.50 16 43 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.07 1.77 7.37 -2.39 -0.02 1.75 16 45 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -69.11 375.01 2.55 -66.56 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.29 Total: 17.81 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 5.35 Total: 0.17 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -3.80 Total: -110.83 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.07 Total: -22.95 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -1.25 Total: 2.59 kcal Total: -69.11 2.55 -66.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942315143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.099 kcal (2) G-P(sol) polarization free energy of solvation -69.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds