Wall clock time and date at job start Tue Mar 31 2020 13:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47465 * 2 1 4 4 C 1.33820 * 124.52133 * 89.99262 * 3 2 1 5 5 C 1.37478 * 115.09721 * 180.02562 * 4 3 2 6 6 C 1.36644 * 113.29797 * 0.02562 * 5 4 3 7 7 C 1.46581 * 125.45354 * 180.02562 * 6 5 4 8 8 O 1.21701 * 120.00355 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99795 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00209 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.45171 * 35.02078 * 10 9 7 12 12 C 1.53043 * 109.42838 * 275.04635 * 10 9 7 13 13 C 1.53195 * 109.34151 * 301.31465 * 12 10 9 14 14 N 1.46931 * 108.77090 * 305.37743 * 13 12 10 15 15 C 1.36931 * 120.63052 * 233.62821 * 14 13 12 16 16 H 1.07997 * 119.99836 * 27.67259 * 15 14 13 17 17 C 1.38814 * 120.00018 * 207.66856 * 15 14 13 18 18 N 1.31616 * 120.00061 * 17.36294 * 17 15 14 19 19 Si 1.86793 * 120.00044 * 197.36386 * 17 15 14 20 20 H 1.48499 * 109.47482 * 59.99956 * 19 17 15 21 21 H 1.48497 * 109.47288 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47539 * 300.00126 * 19 17 15 23 23 C 1.46932 * 118.73674 * 53.60944 * 14 13 12 24 24 C 1.53031 * 109.46423 * 154.99590 * 10 9 7 25 25 H 1.09001 * 109.50079 * 178.63377 * 24 10 9 26 26 C 1.53002 * 109.49662 * 298.70212 * 24 10 9 27 27 S 1.70619 * 124.52399 * 270.34976 * 3 2 1 28 28 H 1.09000 * 109.47306 * 300.00378 * 1 2 3 29 29 H 1.09007 * 109.47086 * 60.00153 * 1 2 3 30 30 H 1.08994 * 109.47515 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47306 * 239.99622 * 2 1 3 32 32 H 1.09007 * 109.47086 * 119.99847 * 2 1 3 33 33 H 1.08003 * 122.45117 * 0.02562 * 4 3 2 34 34 H 1.07998 * 123.34483 * 179.97438 * 5 4 3 35 35 H 0.97005 * 119.99603 * 359.97438 * 9 7 6 36 36 H 1.08997 * 109.47247 * 181.35515 * 12 10 9 37 37 H 1.09004 * 109.52189 * 61.29502 * 12 10 9 38 38 H 1.08995 * 109.58404 * 185.59775 * 13 12 10 39 39 H 1.09000 * 109.58653 * 65.16514 * 13 12 10 40 40 H 0.97000 * 120.00280 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.58387 * 186.60013 * 23 14 13 42 42 H 1.09007 * 109.69781 * 66.24826 * 23 14 13 43 43 H 1.09000 * 109.46857 * 179.97438 * 26 24 10 44 44 H 1.08995 * 109.47171 * 59.93537 * 26 24 10 45 45 H 1.08997 * 109.46945 * 299.93271 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2851 2.1358 1.1026 5 6 2.7367 3.4146 0.8775 6 6 2.8452 3.7238 -0.4491 7 6 3.2994 5.0089 -0.9882 8 8 3.6175 5.9079 -0.2320 9 7 3.3639 5.1954 -2.3215 10 6 3.8184 6.4796 -2.8605 11 1 4.5913 6.8923 -2.2120 12 6 2.6370 7.4502 -2.9280 13 6 1.5388 6.8518 -3.8128 14 7 2.1172 6.5134 -5.1204 15 6 1.5543 6.9862 -6.2757 16 1 1.0051 7.9160 -6.2675 17 6 1.6898 6.2704 -7.4573 18 7 2.0453 5.0036 -7.4223 19 14 1.3675 7.1049 -9.0970 20 1 2.2997 8.2491 -9.2619 21 1 1.5799 6.1315 -10.1981 22 1 -0.0328 7.5981 -9.1349 23 6 3.3112 5.6583 -5.1647 24 6 4.3894 6.2699 -4.2647 25 1 4.7056 7.2287 -4.6758 26 6 5.5903 5.3246 -4.1917 27 16 2.3467 2.3353 -1.4057 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.1445 1.7374 2.0965 34 1 2.9807 4.1062 1.6703 35 1 3.1100 4.4790 -2.9243 36 1 2.9692 8.3980 -3.3513 37 1 2.2451 7.6173 -1.9247 38 1 0.7387 7.5801 -3.9447 39 1 1.1424 5.9510 -3.3443 40 1 2.1396 4.5033 -8.2479 41 1 3.6803 5.5989 -6.1886 42 1 3.0610 4.6591 -4.8080 43 1 5.9963 5.1752 -5.1922 44 1 5.2737 4.3661 -3.7806 45 1 6.3567 5.7597 -3.5504 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942315145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:56 Heat of formation + Delta-G solvation = 0.806264 kcal Electronic energy + Delta-G solvation = -25555.854463 eV Core-core repulsion = 22085.840614 eV Total energy + Delta-G solvation = -3470.013849 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.89948 -38.30623 -37.30703 -34.22051 -33.88707 -32.24022 -31.82562 -29.83719 -28.59793 -26.01377 -25.58267 -24.87630 -22.63162 -22.28592 -21.38576 -20.91654 -19.23058 -18.57263 -17.87330 -16.82053 -16.10469 -15.53322 -15.10877 -14.86158 -14.63797 -14.32577 -14.15877 -13.90205 -13.64147 -13.37550 -13.24474 -13.13404 -12.93353 -12.61183 -12.37564 -12.08521 -11.97448 -11.71312 -11.46347 -11.32688 -11.22347 -11.03784 -10.94121 -10.83365 -10.70107 -10.41472 -10.15140 -9.97841 -9.85306 -9.70630 -9.44337 -8.82473 -8.63406 -8.56487 -8.45876 -6.70602 -5.82616 -3.24159 0.50695 1.43699 1.87146 2.37630 3.36820 3.39956 3.42635 3.44348 3.47387 4.46782 4.47361 4.78212 4.98566 5.01305 5.17330 5.28054 5.30742 5.33155 5.42796 5.47484 5.56373 5.57569 5.66436 5.68500 5.83724 5.93443 5.94193 6.06974 6.11765 6.14775 6.19472 6.31282 6.34087 6.45663 6.53711 6.54903 6.64708 6.77991 6.91919 6.99556 7.26199 7.56290 7.76107 7.80590 8.41166 8.42842 9.17576 9.80818 10.37464 11.25918 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.003764 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.129864 B = 7437.046346 C = 8453.433524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.199 4.199 4 C -0.155 4.155 5 C -0.059 4.059 6 C -0.263 4.263 7 C 0.587 3.413 8 O -0.541 6.541 9 N -0.706 5.706 10 C 0.161 3.839 11 H 0.075 0.925 12 C -0.146 4.146 13 C 0.147 3.853 14 N -0.591 5.591 15 C -0.253 4.253 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.178 3.822 24 C -0.129 4.129 25 H 0.080 0.920 26 C -0.140 4.140 27 S 0.215 5.785 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.141 0.859 34 H 0.150 0.850 35 H 0.401 0.599 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.016 0.984 40 H 0.254 0.746 41 H 0.092 0.908 42 H 0.014 0.986 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 -9.037 13.982 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.319 4.319 4 C -0.186 4.186 5 C -0.093 4.093 6 C -0.383 4.383 7 C 0.373 3.627 8 O -0.421 6.421 9 N -0.357 5.357 10 C 0.057 3.943 11 H 0.093 0.907 12 C -0.186 4.186 13 C 0.021 3.979 14 N -0.314 5.314 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.052 3.948 24 C -0.149 4.149 25 H 0.098 0.902 26 C -0.198 4.198 27 S 0.483 5.517 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.158 0.842 34 H 0.168 0.832 35 H 0.237 0.763 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.032 0.968 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.086 -8.783 12.752 15.624 hybrid contribution -0.229 0.270 0.462 0.582 sum 1.857 -8.513 13.215 15.828 Atomic orbital electron populations 1.21811 0.94062 1.02114 1.02762 1.20139 0.96397 0.89457 1.03403 1.24304 1.07390 1.02108 0.98126 1.19903 1.05133 0.94181 0.99369 1.20687 0.97250 0.96165 0.95151 1.24729 1.15778 0.99726 0.98081 1.16945 0.77736 0.85401 0.82633 1.90783 1.50168 1.42897 1.58233 1.46075 1.66637 1.17263 1.05725 1.20942 0.96074 0.82578 0.94728 0.90662 1.22393 0.97683 0.98694 0.99856 1.20866 0.93485 0.96845 0.86718 1.44047 1.27987 1.58691 1.00640 1.19152 1.30926 1.02100 0.86046 0.91696 1.25001 1.01050 0.94819 0.98595 1.70003 1.51877 1.06385 1.26504 0.86377 0.78237 0.78632 0.83573 1.21045 1.21647 1.20917 1.20789 0.84424 0.90551 0.99039 1.22149 0.97033 1.00754 0.95010 0.90169 1.21728 0.97438 0.99288 1.01297 1.83380 1.59107 1.02262 1.06907 0.92233 0.92146 0.91930 0.90570 0.89970 0.84173 0.83204 0.76292 0.91280 0.92479 0.92826 0.96601 0.93578 0.88995 0.96833 0.92490 0.93276 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.16 0.37 -0.78 16 2 C -0.05 -0.44 6.36 -27.89 -0.18 -0.62 16 3 C -0.20 -2.12 5.53 -35.86 -0.20 -2.32 16 4 C -0.15 -1.66 10.00 -41.41 -0.41 -2.07 16 5 C -0.06 -0.76 10.01 -40.43 -0.40 -1.17 16 6 C -0.26 -3.83 6.45 -36.80 -0.24 -4.07 16 7 C 0.59 10.07 7.75 -12.89 -0.10 9.97 16 8 O -0.54 -10.63 16.50 5.19 0.09 -10.54 16 9 N -0.71 -11.97 3.59 -55.11 -0.20 -12.17 16 10 C 0.16 2.84 2.21 -67.89 -0.15 2.69 16 11 H 0.08 1.34 7.58 -51.93 -0.39 0.94 16 12 C -0.15 -2.71 5.77 -26.61 -0.15 -2.86 16 13 C 0.15 3.11 6.26 -3.71 -0.02 3.08 16 14 N -0.59 -14.28 2.99 -172.31 -0.52 -14.79 16 15 C -0.25 -6.76 9.58 -15.06 -0.14 -6.91 16 16 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 17 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 18 N -0.90 -25.17 11.19 55.49 0.62 -24.55 16 19 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.18 3.97 4.30 -3.71 -0.02 3.95 16 24 C -0.13 -2.34 2.67 -90.50 -0.24 -2.59 16 25 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 26 C -0.14 -2.18 9.05 37.16 0.34 -1.85 16 27 S 0.21 2.69 22.10 -107.50 -2.38 0.31 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.15 1.83 8.06 -52.49 -0.42 1.40 16 35 H 0.40 6.80 5.85 -40.82 -0.24 6.56 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 39 H 0.02 0.35 7.74 -51.93 -0.40 -0.06 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.09 2.33 6.03 -51.93 -0.31 2.01 16 42 H 0.01 0.31 6.65 -51.93 -0.35 -0.03 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.75 7.53 -51.93 -0.39 0.36 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 371.08 15.07 5.59 5.59 Total: -1.00 -29.74 371.08 -10.58 -40.32 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.12 Total: 5.11 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -1.64 Total: -5.49 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.09 Total: -51.52 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -2.38 Total: 0.31 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.74 -10.58 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942315145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.128 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds