Wall clock time and date at job start Tue Mar 31 2020 13:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47465 * 2 1 4 4 C 1.33820 * 124.52133 * 89.99262 * 3 2 1 5 5 C 1.37478 * 115.09721 * 180.02562 * 4 3 2 6 6 C 1.36644 * 113.29797 * 0.02562 * 5 4 3 7 7 C 1.46581 * 125.45354 * 180.02562 * 6 5 4 8 8 O 1.21701 * 120.00355 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99795 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00209 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.45171 * 35.02078 * 10 9 7 12 12 C 1.53043 * 109.42838 * 275.04635 * 10 9 7 13 13 C 1.53195 * 109.34151 * 301.31465 * 12 10 9 14 14 N 1.46931 * 108.77090 * 305.37743 * 13 12 10 15 15 C 1.36931 * 120.63052 * 233.62821 * 14 13 12 16 16 H 1.07997 * 119.99836 * 27.67259 * 15 14 13 17 17 C 1.38814 * 120.00018 * 207.66856 * 15 14 13 18 18 N 1.31616 * 120.00061 * 17.36294 * 17 15 14 19 19 Si 1.86793 * 120.00044 * 197.36386 * 17 15 14 20 20 H 1.48499 * 109.47482 * 59.99956 * 19 17 15 21 21 H 1.48497 * 109.47288 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47539 * 300.00126 * 19 17 15 23 23 C 1.46932 * 118.73674 * 53.60944 * 14 13 12 24 24 C 1.53031 * 109.46423 * 154.99590 * 10 9 7 25 25 H 1.09001 * 109.50079 * 178.63377 * 24 10 9 26 26 C 1.53002 * 109.49662 * 298.70212 * 24 10 9 27 27 S 1.70619 * 124.52399 * 270.34976 * 3 2 1 28 28 H 1.09000 * 109.47306 * 300.00378 * 1 2 3 29 29 H 1.09007 * 109.47086 * 60.00153 * 1 2 3 30 30 H 1.08994 * 109.47515 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47306 * 239.99622 * 2 1 3 32 32 H 1.09007 * 109.47086 * 119.99847 * 2 1 3 33 33 H 1.08003 * 122.45117 * 0.02562 * 4 3 2 34 34 H 1.07998 * 123.34483 * 179.97438 * 5 4 3 35 35 H 0.97005 * 119.99603 * 359.97438 * 9 7 6 36 36 H 1.08997 * 109.47247 * 181.35515 * 12 10 9 37 37 H 1.09004 * 109.52189 * 61.29502 * 12 10 9 38 38 H 1.08995 * 109.58404 * 185.59775 * 13 12 10 39 39 H 1.09000 * 109.58653 * 65.16514 * 13 12 10 40 40 H 0.97000 * 120.00280 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.58387 * 186.60013 * 23 14 13 42 42 H 1.09007 * 109.69781 * 66.24826 * 23 14 13 43 43 H 1.09000 * 109.46857 * 179.97438 * 26 24 10 44 44 H 1.08995 * 109.47171 * 59.93537 * 26 24 10 45 45 H 1.08997 * 109.46945 * 299.93271 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2851 2.1358 1.1026 5 6 2.7367 3.4146 0.8775 6 6 2.8452 3.7238 -0.4491 7 6 3.2994 5.0089 -0.9882 8 8 3.6175 5.9079 -0.2320 9 7 3.3639 5.1954 -2.3215 10 6 3.8184 6.4796 -2.8605 11 1 4.5913 6.8923 -2.2120 12 6 2.6370 7.4502 -2.9280 13 6 1.5388 6.8518 -3.8128 14 7 2.1172 6.5134 -5.1204 15 6 1.5543 6.9862 -6.2757 16 1 1.0051 7.9160 -6.2675 17 6 1.6898 6.2704 -7.4573 18 7 2.0453 5.0036 -7.4223 19 14 1.3675 7.1049 -9.0970 20 1 2.2997 8.2491 -9.2619 21 1 1.5799 6.1315 -10.1981 22 1 -0.0328 7.5981 -9.1349 23 6 3.3112 5.6583 -5.1647 24 6 4.3894 6.2699 -4.2647 25 1 4.7056 7.2287 -4.6758 26 6 5.5903 5.3246 -4.1917 27 16 2.3467 2.3353 -1.4057 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.1445 1.7374 2.0965 34 1 2.9807 4.1062 1.6703 35 1 3.1100 4.4790 -2.9243 36 1 2.9692 8.3980 -3.3513 37 1 2.2451 7.6173 -1.9247 38 1 0.7387 7.5801 -3.9447 39 1 1.1424 5.9510 -3.3443 40 1 2.1396 4.5033 -8.2479 41 1 3.6803 5.5989 -6.1886 42 1 3.0610 4.6591 -4.8080 43 1 5.9963 5.1752 -5.1922 44 1 5.2737 4.3661 -3.7806 45 1 6.3567 5.7597 -3.5504 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942315145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:55 Heat of formation + Delta-G solvation = -14.423776 kcal Electronic energy + Delta-G solvation = -25556.514888 eV Core-core repulsion = 22085.840614 eV Total energy + Delta-G solvation = -3470.674273 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.29628 -39.50770 -38.58368 -35.94797 -34.67739 -33.75301 -33.55392 -31.50029 -29.64433 -27.54904 -27.16473 -26.07193 -24.02133 -23.26556 -22.82524 -22.42056 -20.40191 -20.09075 -18.94894 -18.70401 -17.15772 -16.94611 -16.64061 -16.40164 -15.88420 -15.63339 -15.43046 -15.18752 -14.98547 -14.73678 -14.68155 -14.37508 -14.27046 -13.77225 -13.62413 -13.28779 -13.09016 -12.93672 -12.84128 -12.78476 -12.55948 -12.49149 -12.39604 -12.21640 -12.05109 -11.81290 -11.73141 -11.65900 -11.50418 -11.17769 -11.10506 -10.53706 -10.12902 -9.63999 -9.56375 -8.67121 -7.86669 -5.30976 -0.49664 0.46127 0.93108 1.40293 1.48620 1.50679 1.57078 2.13520 2.20031 2.52315 3.28003 3.63506 3.69816 3.74009 3.90401 4.02514 4.14708 4.16233 4.31692 4.35251 4.40506 4.48980 4.55742 4.63393 4.71440 4.79479 4.81856 4.92364 4.93490 4.99277 5.03655 5.06171 5.10459 5.14338 5.21225 5.27210 5.32248 5.34682 5.44588 5.47858 5.54808 5.65411 5.74424 6.39802 6.44364 7.08887 7.16042 7.85204 8.37623 9.19222 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.003764 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.129864 B = 7437.046346 C = 8453.433524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.181 4.181 4 C -0.158 4.158 5 C -0.049 4.049 6 C -0.299 4.299 7 C 0.588 3.412 8 O -0.572 6.572 9 N -0.705 5.705 10 C 0.166 3.834 11 H 0.082 0.918 12 C -0.135 4.135 13 C 0.149 3.851 14 N -0.606 5.606 15 C -0.267 4.267 16 H 0.063 0.937 17 C -0.041 4.041 18 N -0.928 5.928 19 Si 0.963 3.037 20 H -0.280 1.280 21 H -0.293 1.293 22 H -0.279 1.279 23 C 0.188 3.812 24 C -0.117 4.117 25 H 0.077 0.923 26 C -0.133 4.133 27 S 0.198 5.802 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.172 0.828 34 H 0.154 0.846 35 H 0.400 0.600 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.010 0.990 40 H 0.251 0.749 41 H 0.060 0.940 42 H 0.003 0.997 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.116 -10.060 15.287 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.301 4.301 4 C -0.188 4.188 5 C -0.083 4.083 6 C -0.420 4.420 7 C 0.376 3.624 8 O -0.454 6.454 9 N -0.355 5.355 10 C 0.061 3.939 11 H 0.100 0.900 12 C -0.175 4.175 13 C 0.023 3.977 14 N -0.329 5.329 15 C -0.397 4.397 16 H 0.080 0.920 17 C -0.237 4.237 18 N -0.574 5.574 19 Si 0.791 3.209 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.205 1.205 23 C 0.063 3.937 24 C -0.138 4.138 25 H 0.095 0.905 26 C -0.191 4.191 27 S 0.466 5.534 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.124 0.876 33 H 0.189 0.811 34 H 0.171 0.829 35 H 0.237 0.763 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.028 0.972 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.021 0.979 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.231 -9.803 14.068 17.291 hybrid contribution -0.346 0.504 0.133 0.625 sum 1.886 -9.300 14.201 17.080 Atomic orbital electron populations 1.21816 0.93666 1.03129 1.02093 1.20310 0.96592 0.87759 1.04886 1.24711 1.05470 1.02986 0.96938 1.20153 1.04660 0.93189 1.00806 1.20951 0.95775 0.97077 0.94509 1.24528 1.18798 0.99549 0.99079 1.17248 0.76899 0.86047 0.82186 1.90751 1.51763 1.44218 1.58710 1.46026 1.66691 1.16857 1.05939 1.20840 0.95779 0.82883 0.94365 0.90030 1.22258 0.97107 0.98864 0.99272 1.20893 0.94273 0.96567 0.85935 1.44267 1.28818 1.58855 1.00999 1.19430 1.30915 1.02098 0.87292 0.91975 1.25668 1.01397 0.95316 1.01366 1.70138 1.52955 1.07422 1.26846 0.85417 0.78128 0.77567 0.79749 1.20617 1.21865 1.20486 1.20600 0.84894 0.90215 0.98021 1.21964 0.96667 1.00814 0.94306 0.90514 1.21670 0.96653 0.98806 1.01954 1.83449 1.59548 1.02189 1.08175 0.92074 0.93666 0.90140 0.90009 0.87553 0.81095 0.82882 0.76347 0.90916 0.92049 0.93188 0.97192 0.93981 0.92159 0.97938 0.92296 0.93050 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.89 71.98 0.71 -1.20 16 2 C -0.06 -0.74 6.36 29.85 0.19 -0.55 16 3 C -0.18 -3.45 5.53 24.68 0.14 -3.31 16 4 C -0.16 -2.97 10.00 21.09 0.21 -2.76 16 5 C -0.05 -1.19 10.01 21.72 0.22 -0.97 16 6 C -0.30 -8.62 6.45 24.07 0.16 -8.46 16 7 C 0.59 20.18 7.75 86.42 0.67 20.85 16 8 O -0.57 -22.44 16.50 -4.35 -0.07 -22.51 16 9 N -0.70 -23.97 3.59 -446.47 -1.60 -25.57 16 10 C 0.17 5.80 2.21 45.02 0.10 5.90 16 11 H 0.08 2.82 7.58 -2.39 -0.02 2.80 16 12 C -0.14 -4.97 5.77 30.67 0.18 -4.80 16 13 C 0.15 6.37 6.26 86.36 0.54 6.91 16 14 N -0.61 -29.79 2.99 -699.06 -2.09 -31.88 16 15 C -0.27 -14.50 9.58 84.03 0.81 -13.69 16 16 H 0.06 3.33 7.89 -2.91 -0.02 3.31 16 17 C -0.04 -2.25 4.91 84.86 0.42 -1.83 16 18 N -0.93 -52.72 11.19 21.65 0.24 -52.48 16 19 Si 0.96 44.06 29.59 68.60 2.03 46.09 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 23 C 0.19 8.56 4.30 86.36 0.37 8.93 16 24 C -0.12 -4.24 2.67 -10.72 -0.03 -4.27 16 25 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 26 C -0.13 -4.04 9.05 71.98 0.65 -3.39 16 27 S 0.20 4.84 22.10 -56.49 -1.25 3.59 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 35 H 0.40 13.79 5.85 -92.70 -0.54 13.25 16 36 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 39 H 0.01 0.44 7.74 -2.39 -0.02 0.43 16 40 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 41 H 0.06 3.13 6.03 -2.39 -0.01 3.12 16 42 H 0.00 0.13 6.65 -2.38 -0.02 0.11 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.05 1.53 7.53 -2.39 -0.02 1.51 16 45 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -64.10 371.08 3.02 -61.08 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.44 Total: 24.32 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 5.32 Total: -2.64 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -3.46 Total: -109.93 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.07 Total: -22.51 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -1.25 Total: 3.59 kcal Total: -64.10 3.02 -61.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942315145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.661 kcal (2) G-P(sol) polarization free energy of solvation -64.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds