Wall clock time and date at job start Tue Mar 31 2020 13:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.46932 * 2 1 4 4 C 1.37475 * 123.35390 * 264.97277 * 3 2 1 5 5 C 1.33813 * 115.10198 * 180.02562 * 4 3 2 6 6 S 1.70621 * 110.95428 * 359.72864 * 5 4 3 7 7 C 1.36652 * 123.34981 * 85.00200 * 3 2 1 8 8 C 1.46584 * 125.45540 * 359.97438 * 7 3 2 9 9 O 1.21697 * 120.00328 * 0.02562 * 8 7 3 10 10 N 1.34778 * 119.99573 * 180.02562 * 8 7 3 11 11 C 1.46500 * 120.00202 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.44305 * 35.03093 * 11 10 8 13 13 C 1.53041 * 109.45590 * 275.06968 * 11 10 8 14 14 C 1.52759 * 109.38448 * 301.21486 * 13 11 10 15 15 N 1.46931 * 109.00997 * 305.59177 * 14 13 11 16 16 C 1.36936 * 120.62927 * 233.58601 * 15 14 13 17 17 H 1.08002 * 120.00172 * 153.10341 * 16 15 14 18 18 C 1.38812 * 120.00088 * 333.10162 * 16 15 14 19 19 N 1.31611 * 120.00091 * 158.91661 * 18 16 15 20 20 Si 1.86798 * 119.99879 * 339.18673 * 18 16 15 21 21 H 1.48497 * 109.47270 * 95.07383 * 20 18 16 22 22 H 1.48502 * 109.47210 * 215.07047 * 20 18 16 23 23 H 1.48506 * 109.47531 * 335.07041 * 20 18 16 24 24 C 1.46922 * 118.73721 * 53.30446 * 15 14 13 25 25 C 1.53039 * 109.46164 * 155.00030 * 11 10 8 26 26 H 1.09003 * 109.49537 * 178.60580 * 25 11 10 27 27 C 1.53001 * 109.49758 * 298.70399 * 25 11 10 28 28 H 1.09000 * 109.47131 * 59.99994 * 1 2 3 29 29 H 1.08994 * 109.46846 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47164 * 300.00287 * 1 2 3 31 31 H 1.08998 * 109.47118 * 240.00269 * 2 1 3 32 32 H 1.09000 * 109.47131 * 120.00006 * 2 1 3 33 33 H 1.08003 * 122.44619 * 0.04723 * 4 3 2 34 34 H 1.07998 * 124.51887 * 180.02562 * 5 4 3 35 35 H 0.97003 * 120.00095 * 0.02562 * 10 8 7 36 36 H 1.09004 * 109.50030 * 61.29826 * 13 11 10 37 37 H 1.09004 * 109.49320 * 181.35523 * 13 11 10 38 38 H 1.08999 * 109.51124 * 185.70870 * 14 13 11 39 39 H 1.08996 * 109.43310 * 65.42539 * 14 13 11 40 40 H 0.97001 * 120.00195 * 180.02562 * 19 18 16 41 41 H 1.09009 * 109.58554 * 66.43557 * 24 15 14 42 42 H 1.08996 * 109.58909 * 186.71570 * 24 15 14 43 43 H 1.08999 * 109.46678 * 179.84163 * 27 25 11 44 44 H 1.09005 * 109.46593 * 299.83899 * 27 25 11 45 45 H 1.08998 * 109.47304 * 59.83805 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3791 2.1000 -1.1439 5 6 2.8052 3.3539 -0.9525 6 16 2.7861 3.7586 0.7049 7 6 2.1890 2.1623 1.1372 8 6 1.8996 1.7025 2.4986 9 8 1.4834 0.5741 2.6842 10 7 2.0944 2.5296 3.5448 11 6 1.8058 2.0700 4.9056 12 1 2.0522 1.0117 4.9910 13 6 0.3193 2.2733 5.2077 14 6 -0.0310 3.7525 5.0567 15 7 0.8711 4.5467 5.9018 16 6 0.3697 5.4386 6.8120 17 1 0.9404 5.6884 7.6942 18 6 -0.8723 6.0216 6.6007 19 7 -1.5405 6.5319 7.6133 20 14 -1.5985 6.0750 4.8805 21 1 -2.5068 4.9158 4.6904 22 1 -2.3623 7.3363 4.7047 23 1 -0.5037 6.0156 3.8789 24 6 2.3213 4.3613 5.7562 25 6 2.6452 2.8713 5.9032 26 1 2.4127 2.5469 6.9175 27 6 4.1313 2.6414 5.6208 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.3123 1.6540 -2.1253 34 1 3.1148 4.0223 -1.7423 35 1 2.4258 3.4291 3.3968 36 1 -0.2775 1.6839 4.5116 37 1 0.1086 1.9539 6.2284 38 1 -1.0625 3.9160 5.3688 39 1 0.0890 4.0491 4.0148 40 1 -2.4085 6.9390 7.4658 41 1 2.6371 4.7085 4.7723 42 1 2.8416 4.9284 6.5280 43 1 4.7286 3.2146 6.3298 44 1 4.3611 1.5811 5.7256 45 1 4.3625 2.9648 4.6059 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000945088093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:46 Heat of formation + Delta-G solvation = 10.340979 kcal Electronic energy + Delta-G solvation = -26218.735891 eV Core-core repulsion = 22749.135498 eV Total energy + Delta-G solvation = -3469.600393 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.20519 -38.73156 -37.37037 -34.45626 -32.89333 -32.60504 -31.61914 -30.68354 -29.11414 -26.42409 -25.69095 -24.92146 -22.52836 -22.33421 -21.55943 -21.36356 -19.14244 -18.79919 -18.12994 -16.79664 -16.07520 -15.73494 -15.34799 -15.04449 -14.80494 -14.38221 -14.15550 -13.95487 -13.66273 -13.60468 -13.43464 -13.42579 -12.97210 -12.56174 -12.46692 -12.26216 -11.99688 -11.78021 -11.63054 -11.57428 -11.53677 -11.28308 -11.10000 -10.78727 -10.65855 -10.55858 -10.22266 -9.97967 -9.75686 -9.69194 -9.49753 -9.03720 -8.76961 -8.60894 -8.56794 -7.00969 -5.97163 -3.32759 0.41377 1.36479 1.76030 2.26488 3.25103 3.32361 3.32857 3.47284 3.49048 4.51457 4.65697 4.79011 4.89724 4.98464 5.02670 5.11557 5.22334 5.27371 5.32302 5.40990 5.42367 5.58620 5.66284 5.70290 5.83091 5.86357 5.87895 5.94333 5.97439 6.01294 6.14422 6.16467 6.24417 6.31207 6.33478 6.39446 6.44362 6.56296 6.62536 6.67073 6.73974 6.91856 7.63384 7.92438 8.29885 8.30428 8.90823 9.69779 10.06478 11.18634 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.004536 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.593735 B = 6171.248981 C = 6600.803175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 C -0.023 4.023 4 C -0.147 4.147 5 C -0.232 4.232 6 S 0.198 5.802 7 C -0.266 4.266 8 C 0.589 3.411 9 O -0.529 6.529 10 N -0.712 5.712 11 C 0.161 3.839 12 H 0.082 0.918 13 C -0.147 4.147 14 C 0.129 3.871 15 N -0.604 5.604 16 C -0.261 4.261 17 H 0.086 0.914 18 C 0.026 3.974 19 N -0.907 5.907 20 Si 0.880 3.120 21 H -0.290 1.290 22 H -0.303 1.303 23 H -0.270 1.270 24 C 0.154 3.846 25 C -0.121 4.121 26 H 0.088 0.912 27 C -0.142 4.142 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.143 0.857 34 H 0.167 0.833 35 H 0.397 0.603 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.023 0.977 40 H 0.262 0.738 41 H 0.016 0.984 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.847 -9.570 -16.075 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 C -0.038 4.038 4 C -0.178 4.178 5 C -0.369 4.369 6 S 0.467 5.533 7 C -0.386 4.386 8 C 0.375 3.625 9 O -0.408 6.408 10 N -0.363 5.363 11 C 0.058 3.942 12 H 0.100 0.900 13 C -0.187 4.187 14 C 0.003 3.997 15 N -0.328 5.328 16 C -0.389 4.389 17 H 0.104 0.896 18 C -0.173 4.173 19 N -0.550 5.550 20 Si 0.710 3.290 21 H -0.218 1.218 22 H -0.232 1.232 23 H -0.195 1.195 24 C 0.028 3.972 25 C -0.141 4.141 26 H 0.107 0.893 27 C -0.200 4.200 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.160 0.840 34 H 0.185 0.815 35 H 0.233 0.767 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.041 0.959 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.796 -8.888 -15.009 20.514 hybrid contribution -0.780 -0.501 -2.078 2.275 sum 10.016 -9.389 -17.087 21.919 Atomic orbital electron populations 1.21605 0.94303 1.01695 1.01888 1.20395 0.96522 0.90557 1.03413 1.19513 0.96368 0.97551 0.90389 1.19901 1.04055 0.94278 0.99616 1.25245 1.08428 1.01299 1.01975 1.83250 1.59958 1.11404 0.98736 1.24555 1.16788 0.99355 0.97890 1.16881 0.77818 0.85106 0.82703 1.90762 1.46069 1.18992 1.84983 1.46064 1.66857 1.16614 1.06781 1.20935 0.95317 0.98417 0.79570 0.90001 1.22328 0.95159 0.99182 1.02027 1.21188 0.95378 0.89345 0.93762 1.44345 0.99740 1.44274 1.44393 1.18907 1.02814 1.17788 0.99393 0.89604 1.25233 0.97114 0.98046 0.96923 1.69837 1.13443 1.42158 1.29521 0.86991 0.78804 0.75872 0.87289 1.21785 1.23180 1.19511 1.20934 0.85631 0.92115 0.98517 1.21958 0.93976 0.98763 0.99416 0.89325 1.21765 0.95787 1.01167 1.01291 0.93358 0.92403 0.92029 0.91553 0.88680 0.83972 0.81500 0.76701 0.92107 0.90623 0.91104 0.95881 0.92764 0.96620 0.91364 0.92412 0.93016 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.78 37.16 0.36 -1.23 16 2 C -0.07 -0.80 5.50 -27.88 -0.15 -0.96 16 3 C -0.02 -0.28 5.16 -105.47 -0.54 -0.83 16 4 C -0.15 -1.48 9.96 -41.41 -0.41 -1.90 16 5 C -0.23 -2.21 10.92 29.18 0.32 -1.89 16 6 S 0.20 2.23 22.16 -107.50 -2.38 -0.16 16 7 C -0.27 -3.62 6.45 -36.79 -0.24 -3.86 16 8 C 0.59 9.22 7.74 -12.89 -0.10 9.12 16 9 O -0.53 -9.25 13.38 5.19 0.07 -9.18 16 10 N -0.71 -10.88 3.60 -55.10 -0.20 -11.08 16 11 C 0.16 2.58 2.21 -67.89 -0.15 2.43 16 12 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 13 C -0.15 -2.71 5.75 -26.83 -0.15 -2.87 16 14 C 0.13 2.81 3.91 -3.93 -0.02 2.80 16 15 N -0.60 -13.80 2.78 -172.58 -0.48 -14.28 16 16 C -0.26 -7.12 10.04 -15.06 -0.15 -7.27 16 17 H 0.09 2.49 8.05 -52.49 -0.42 2.07 16 18 C 0.03 0.74 5.23 -17.43 -0.09 0.65 16 19 N -0.91 -27.61 13.97 55.49 0.78 -26.84 16 20 Si 0.88 22.43 24.35 -169.99 -4.14 18.29 16 21 H -0.29 -7.30 6.70 56.52 0.38 -6.92 16 22 H -0.30 -7.88 7.11 56.52 0.40 -7.47 16 23 H -0.27 -6.69 6.48 56.52 0.37 -6.32 16 24 C 0.15 2.82 5.51 -3.71 -0.02 2.80 16 25 C -0.12 -1.84 2.67 -90.50 -0.24 -2.09 16 26 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 27 C -0.14 -1.75 9.06 37.16 0.34 -1.41 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.87 7.60 -51.93 -0.39 0.47 16 31 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 32 H 0.09 1.27 6.33 -51.93 -0.33 0.94 16 33 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.40 5.84 5.84 -40.82 -0.24 5.60 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.07 1.73 4.49 -51.93 -0.23 1.50 16 39 H 0.02 0.51 6.60 -51.93 -0.34 0.17 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.02 0.28 6.64 -51.92 -0.34 -0.07 16 42 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.60 7.53 -51.93 -0.39 0.21 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -31.09 358.56 -9.13 -40.22 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.92 Total: 4.11 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -1.25 Total: -6.49 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.10 Total: -52.20 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.07 Total: -9.18 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.29 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.38 Total: -0.16 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.09 -9.13 -40.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945088093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.561 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds