Wall clock time and date at job start Tue Mar 31 2020 13:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.46932 * 2 1 4 4 C 1.37475 * 123.35390 * 264.97277 * 3 2 1 5 5 C 1.33813 * 115.10198 * 180.02562 * 4 3 2 6 6 S 1.70621 * 110.95428 * 359.72864 * 5 4 3 7 7 C 1.36652 * 123.34981 * 85.00200 * 3 2 1 8 8 C 1.46584 * 125.45540 * 359.97438 * 7 3 2 9 9 O 1.21697 * 120.00328 * 0.02562 * 8 7 3 10 10 N 1.34778 * 119.99573 * 180.02562 * 8 7 3 11 11 C 1.46500 * 120.00202 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.44305 * 35.03093 * 11 10 8 13 13 C 1.53041 * 109.45590 * 275.06968 * 11 10 8 14 14 C 1.52759 * 109.38448 * 301.21486 * 13 11 10 15 15 N 1.46931 * 109.00997 * 305.59177 * 14 13 11 16 16 C 1.36936 * 120.62927 * 233.58601 * 15 14 13 17 17 H 1.08002 * 120.00172 * 153.10341 * 16 15 14 18 18 C 1.38812 * 120.00088 * 333.10162 * 16 15 14 19 19 N 1.31611 * 120.00091 * 158.91661 * 18 16 15 20 20 Si 1.86798 * 119.99879 * 339.18673 * 18 16 15 21 21 H 1.48497 * 109.47270 * 95.07383 * 20 18 16 22 22 H 1.48502 * 109.47210 * 215.07047 * 20 18 16 23 23 H 1.48506 * 109.47531 * 335.07041 * 20 18 16 24 24 C 1.46922 * 118.73721 * 53.30446 * 15 14 13 25 25 C 1.53039 * 109.46164 * 155.00030 * 11 10 8 26 26 H 1.09003 * 109.49537 * 178.60580 * 25 11 10 27 27 C 1.53001 * 109.49758 * 298.70399 * 25 11 10 28 28 H 1.09000 * 109.47131 * 59.99994 * 1 2 3 29 29 H 1.08994 * 109.46846 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47164 * 300.00287 * 1 2 3 31 31 H 1.08998 * 109.47118 * 240.00269 * 2 1 3 32 32 H 1.09000 * 109.47131 * 120.00006 * 2 1 3 33 33 H 1.08003 * 122.44619 * 0.04723 * 4 3 2 34 34 H 1.07998 * 124.51887 * 180.02562 * 5 4 3 35 35 H 0.97003 * 120.00095 * 0.02562 * 10 8 7 36 36 H 1.09004 * 109.50030 * 61.29826 * 13 11 10 37 37 H 1.09004 * 109.49320 * 181.35523 * 13 11 10 38 38 H 1.08999 * 109.51124 * 185.70870 * 14 13 11 39 39 H 1.08996 * 109.43310 * 65.42539 * 14 13 11 40 40 H 0.97001 * 120.00195 * 180.02562 * 19 18 16 41 41 H 1.09009 * 109.58554 * 66.43557 * 24 15 14 42 42 H 1.08996 * 109.58909 * 186.71570 * 24 15 14 43 43 H 1.08999 * 109.46678 * 179.84163 * 27 25 11 44 44 H 1.09005 * 109.46593 * 299.83899 * 27 25 11 45 45 H 1.08998 * 109.47304 * 59.83805 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3791 2.1000 -1.1439 5 6 2.8052 3.3539 -0.9525 6 16 2.7861 3.7586 0.7049 7 6 2.1890 2.1623 1.1372 8 6 1.8996 1.7025 2.4986 9 8 1.4834 0.5741 2.6842 10 7 2.0944 2.5296 3.5448 11 6 1.8058 2.0700 4.9056 12 1 2.0522 1.0117 4.9910 13 6 0.3193 2.2733 5.2077 14 6 -0.0310 3.7525 5.0567 15 7 0.8711 4.5467 5.9018 16 6 0.3697 5.4386 6.8120 17 1 0.9404 5.6884 7.6942 18 6 -0.8723 6.0216 6.6007 19 7 -1.5405 6.5319 7.6133 20 14 -1.5985 6.0750 4.8805 21 1 -2.5068 4.9158 4.6904 22 1 -2.3623 7.3363 4.7047 23 1 -0.5037 6.0156 3.8789 24 6 2.3213 4.3613 5.7562 25 6 2.6452 2.8713 5.9032 26 1 2.4127 2.5469 6.9175 27 6 4.1313 2.6414 5.6208 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.3123 1.6540 -2.1253 34 1 3.1148 4.0223 -1.7423 35 1 2.4258 3.4291 3.3968 36 1 -0.2775 1.6839 4.5116 37 1 0.1086 1.9539 6.2284 38 1 -1.0625 3.9160 5.3688 39 1 0.0890 4.0491 4.0148 40 1 -2.4085 6.9390 7.4658 41 1 2.6371 4.7085 4.7723 42 1 2.8416 4.9284 6.5280 43 1 4.7286 3.2146 6.3298 44 1 4.3611 1.5811 5.7256 45 1 4.3625 2.9648 4.6059 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000945088093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:46 Heat of formation + Delta-G solvation = -8.114707 kcal Electronic energy + Delta-G solvation = -26219.536189 eV Core-core repulsion = 22749.135498 eV Total energy + Delta-G solvation = -3470.400692 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43535 -39.87565 -38.55517 -36.10353 -34.13792 -33.63500 -33.41754 -32.25962 -30.14587 -27.81571 -27.15788 -26.14782 -23.86765 -23.33381 -23.22546 -22.54273 -20.43068 -19.95884 -19.08959 -18.71984 -17.38629 -16.99805 -16.70385 -16.47146 -16.03887 -15.83920 -15.30536 -15.18953 -15.08918 -14.94180 -14.66973 -14.49798 -14.23342 -13.96942 -13.82350 -13.49670 -13.27092 -13.20690 -12.93467 -12.85021 -12.83835 -12.41838 -12.29119 -12.12414 -12.01238 -11.92979 -11.68810 -11.65273 -11.44726 -11.29863 -10.90550 -10.74492 -10.15884 -9.73625 -9.44005 -8.95296 -8.18275 -5.48704 -0.47219 0.50722 0.94617 1.27260 1.36560 1.41648 1.44862 2.11728 2.19753 2.39130 3.01250 3.31445 3.65011 3.83527 3.89108 3.91329 4.04789 4.16683 4.19707 4.31519 4.39117 4.46562 4.51518 4.52627 4.55472 4.71304 4.76068 4.84459 4.85926 4.90567 4.92549 5.00023 5.06353 5.09209 5.12309 5.19174 5.27477 5.31216 5.38676 5.44680 5.52572 5.56996 5.84752 6.11781 6.45531 6.88749 7.13437 7.60299 8.01008 9.01384 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.004536 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.593735 B = 6171.248981 C = 6600.803175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.070 4.070 3 C -0.021 4.021 4 C -0.155 4.155 5 C -0.212 4.212 6 S 0.197 5.803 7 C -0.304 4.304 8 C 0.587 3.413 9 O -0.555 6.555 10 N -0.710 5.710 11 C 0.169 3.831 12 H 0.088 0.912 13 C -0.139 4.139 14 C 0.131 3.869 15 N -0.615 5.615 16 C -0.243 4.243 17 H 0.060 0.940 18 C -0.029 4.029 19 N -0.954 5.954 20 Si 0.936 3.064 21 H -0.289 1.289 22 H -0.310 1.310 23 H -0.256 1.256 24 C 0.150 3.850 25 C -0.109 4.109 26 H 0.081 0.919 27 C -0.134 4.134 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.171 0.829 34 H 0.200 0.800 35 H 0.400 0.600 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.027 0.973 40 H 0.261 0.739 41 H 0.035 0.965 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.725 -10.312 -19.298 25.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 C -0.037 4.037 4 C -0.186 4.186 5 C -0.350 4.350 6 S 0.465 5.535 7 C -0.424 4.424 8 C 0.375 3.625 9 O -0.436 6.436 10 N -0.362 5.362 11 C 0.064 3.936 12 H 0.106 0.894 13 C -0.179 4.179 14 C 0.006 3.994 15 N -0.339 5.339 16 C -0.373 4.373 17 H 0.078 0.922 18 C -0.224 4.224 19 N -0.601 5.601 20 Si 0.766 3.234 21 H -0.217 1.217 22 H -0.239 1.239 23 H -0.181 1.181 24 C 0.025 3.975 25 C -0.130 4.130 26 H 0.099 0.901 27 C -0.192 4.192 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.188 0.812 34 H 0.217 0.783 35 H 0.237 0.763 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.044 0.956 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.724 -9.648 -18.265 24.261 hybrid contribution -1.293 -0.311 -1.102 1.727 sum 11.431 -9.959 -19.367 24.596 Atomic orbital electron populations 1.21559 0.94505 1.02106 1.00888 1.20399 0.96274 0.90562 1.03642 1.19819 0.95311 0.97717 0.90857 1.20142 1.03964 0.94419 1.00035 1.25666 1.06341 1.01433 1.01547 1.83221 1.59839 1.10067 1.00340 1.24450 1.19666 1.01181 0.97122 1.17200 0.77060 0.84706 0.83543 1.90743 1.47248 1.20058 1.85574 1.45993 1.66994 1.16793 1.06386 1.20795 0.93455 0.98927 0.80377 0.89426 1.22217 0.97311 0.96625 1.01793 1.21110 0.93750 0.91231 0.93348 1.44439 1.01905 1.43728 1.43828 1.18895 1.02078 1.17208 0.99102 0.92230 1.25778 0.98039 0.98888 0.99739 1.69953 1.14144 1.44614 1.31339 0.86064 0.78354 0.75274 0.83678 1.21681 1.23907 1.18055 1.21155 0.82695 0.94272 0.99379 1.21820 0.96138 0.96154 0.98864 0.90064 1.21697 0.93157 1.02227 1.02079 0.92008 0.91372 0.95199 0.88782 0.90921 0.81171 0.78305 0.76313 0.92192 0.91107 0.93928 0.95550 0.93039 0.94728 0.91582 0.91181 0.91881 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.78 71.98 0.70 -2.21 16 2 C -0.07 -1.48 5.50 29.85 0.16 -1.32 16 3 C -0.02 -0.47 5.16 -20.41 -0.11 -0.57 16 4 C -0.16 -2.55 9.96 21.08 0.21 -2.34 16 5 C -0.21 -3.20 10.92 66.81 0.73 -2.47 16 6 S 0.20 3.92 22.16 -56.49 -1.25 2.67 16 7 C -0.30 -7.81 6.45 24.08 0.16 -7.65 16 8 C 0.59 17.88 7.74 86.42 0.67 18.55 16 9 O -0.56 -19.34 13.38 -4.34 -0.06 -19.39 16 10 N -0.71 -20.76 3.60 -446.47 -1.61 -22.37 16 11 C 0.17 5.21 2.21 45.02 0.10 5.31 16 12 H 0.09 2.67 7.58 -2.39 -0.02 2.65 16 13 C -0.14 -5.12 5.75 30.53 0.18 -4.94 16 14 C 0.13 5.67 3.91 86.22 0.34 6.01 16 15 N -0.61 -27.96 2.78 -699.93 -1.95 -29.91 16 16 C -0.24 -13.51 10.04 84.03 0.84 -12.66 16 17 H 0.06 3.57 8.05 -2.91 -0.02 3.55 16 18 C -0.03 -1.72 5.23 84.86 0.44 -1.28 16 19 N -0.95 -59.96 13.97 21.65 0.30 -59.65 16 20 Si 0.94 47.17 24.35 68.60 1.67 48.84 16 21 H -0.29 -14.37 6.70 99.48 0.67 -13.70 16 22 H -0.31 -15.82 7.11 99.48 0.71 -15.12 16 23 H -0.26 -12.15 6.48 99.48 0.64 -11.51 16 24 C 0.15 5.28 5.51 86.36 0.48 5.75 16 25 C -0.11 -3.17 2.67 -10.72 -0.03 -3.20 16 26 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 27 C -0.13 -2.94 9.06 71.98 0.65 -2.28 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.03 0.83 7.60 -2.39 -0.02 0.81 16 31 H 0.09 1.45 8.12 -2.39 -0.02 1.43 16 32 H 0.07 1.90 6.33 -2.39 -0.02 1.88 16 33 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.40 11.06 5.84 -92.71 -0.54 10.51 16 36 H 0.06 2.20 8.14 -2.38 -0.02 2.19 16 37 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 38 H 0.04 2.09 4.49 -2.39 -0.01 2.08 16 39 H 0.03 1.14 6.60 -2.39 -0.02 1.12 16 40 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 41 H 0.03 1.12 6.64 -2.38 -0.02 1.11 16 42 H 0.07 2.35 7.93 -2.39 -0.02 2.34 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.06 1.20 7.53 -2.39 -0.02 1.18 16 Total: -1.00 -69.07 358.56 2.99 -66.09 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.35 Total: 19.02 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 5.53 Total: -5.30 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -3.25 Total: -111.93 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.06 Total: -19.39 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.67 Total: 48.84 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.25 Total: 2.67 kcal Total: -69.07 2.99 -66.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945088093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.973 kcal (2) G-P(sol) polarization free energy of solvation -69.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds