Wall clock time and date at job start Tue Mar 31 2020 13:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47324 * 2 1 4 4 C 1.37467 * 123.35280 * 265.02794 * 3 2 1 5 5 C 1.33819 * 115.10033 * 179.72487 * 4 3 2 6 6 S 1.70615 * 110.95596 * 0.02562 * 5 4 3 7 7 C 1.36648 * 123.35063 * 84.72731 * 3 2 1 8 8 C 1.46586 * 125.45880 * 0.27267 * 7 3 2 9 9 O 1.21703 * 119.99864 * 0.02562 * 8 7 3 10 10 N 1.34779 * 120.00326 * 179.97438 * 8 7 3 11 11 C 1.46493 * 119.99877 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.46889 * 325.00501 * 11 10 8 13 13 C 1.53046 * 109.45776 * 84.97974 * 11 10 8 14 14 C 1.53161 * 109.32795 * 58.64113 * 13 11 10 15 15 N 1.46923 * 108.77145 * 54.64127 * 14 13 11 16 16 C 1.36938 * 120.62483 * 126.41346 * 15 14 13 17 17 H 1.08005 * 119.99431 * 207.65701 * 16 15 14 18 18 C 1.38809 * 120.00249 * 27.66441 * 16 15 14 19 19 N 1.31616 * 120.00366 * 17.37255 * 18 16 15 20 20 Si 1.86803 * 119.99871 * 197.37280 * 18 16 15 21 21 H 1.48501 * 109.47245 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46914 * 119.99483 * 20 18 16 23 23 H 1.48493 * 109.47315 * 239.99828 * 20 18 16 24 24 C 1.46925 * 118.73865 * 306.39449 * 15 14 13 25 25 C 1.53045 * 109.45980 * 205.02790 * 11 10 8 26 26 H 1.08996 * 109.49600 * 181.39877 * 25 11 10 27 27 C 1.53002 * 109.49590 * 61.33617 * 25 11 10 28 28 H 1.09010 * 109.47216 * 299.99673 * 1 2 3 29 29 H 1.09000 * 109.47728 * 59.99529 * 1 2 3 30 30 H 1.08998 * 109.47410 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46685 * 239.99974 * 2 1 3 32 32 H 1.08995 * 109.47293 * 120.00331 * 2 1 3 33 33 H 1.07997 * 122.44985 * 359.75093 * 4 3 2 34 34 H 1.08006 * 124.52313 * 179.97438 * 5 4 3 35 35 H 0.96999 * 119.99837 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.49551 * 178.60114 * 13 11 10 37 37 H 1.09001 * 109.49769 * 298.69943 * 13 11 10 38 38 H 1.09003 * 109.58857 * 294.85886 * 14 13 11 39 39 H 1.09000 * 109.59161 * 174.43360 * 14 13 11 40 40 H 0.96996 * 120.00160 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.58401 * 293.81594 * 24 15 14 42 42 H 1.09002 * 109.58263 * 173.39651 * 24 15 14 43 43 H 1.08999 * 109.47017 * 59.99250 * 27 25 11 44 44 H 1.08997 * 109.47004 * 180.02562 * 27 25 11 45 45 H 1.09004 * 109.46513 * 300.00152 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3781 2.1001 -1.1439 5 6 2.7984 3.3562 -0.9531 6 16 2.7826 3.7597 0.7046 7 6 2.1839 2.1640 1.1366 8 6 1.8942 1.7044 2.4981 9 8 1.4825 0.5744 2.6842 10 7 2.0847 2.5330 3.5439 11 6 1.7946 2.0738 4.9045 12 1 0.9349 1.4039 4.8862 13 6 3.0100 1.3285 5.4610 14 6 4.2242 2.2620 5.4532 15 7 3.8820 3.4891 6.1851 16 6 4.6689 3.9291 7.2158 17 1 4.2366 4.5162 8.0126 18 6 6.0221 3.6206 7.2365 19 7 6.6218 3.2162 6.1369 20 14 6.9922 3.7794 8.8250 21 1 6.0928 4.2489 9.9094 22 1 7.5609 2.4576 9.1919 23 1 8.0937 4.7573 8.6367 24 6 2.6796 4.2353 5.7898 25 6 1.4826 3.2796 5.7939 26 1 1.2910 2.9407 6.8120 27 6 0.2473 4.0048 5.2561 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.3148 1.6530 -2.1250 34 1 3.1073 4.0250 -1.7429 35 1 2.4131 3.4335 3.3957 36 1 2.8039 1.0082 6.4823 37 1 3.2176 0.4567 4.8406 38 1 4.4871 2.5111 4.4251 39 1 5.0668 1.7697 5.9389 40 1 7.5675 3.0010 6.1512 41 1 2.8166 4.6453 4.7892 42 1 2.5031 5.0452 6.4978 43 1 -0.6032 3.3231 5.2568 44 1 0.0258 4.8637 5.8895 45 1 0.4399 4.3443 4.2383 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000945088096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:50 Heat of formation + Delta-G solvation = 4.314838 kcal Electronic energy + Delta-G solvation = -26026.566696 eV Core-core repulsion = 22556.704990 eV Total energy + Delta-G solvation = -3469.861706 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.01019 -38.53191 -37.15224 -34.25997 -32.80189 -32.48106 -31.17442 -30.34612 -28.94313 -25.96884 -25.55322 -24.88047 -22.45632 -22.26856 -21.35857 -21.02841 -18.89882 -18.61072 -17.94742 -16.72435 -15.92549 -15.53321 -15.02630 -14.79228 -14.64580 -14.13411 -13.96606 -13.88913 -13.60212 -13.51848 -13.27533 -13.04754 -12.77795 -12.58180 -12.31085 -12.10741 -11.90712 -11.50305 -11.47483 -11.36530 -11.10460 -10.98494 -10.81204 -10.71062 -10.67773 -10.33473 -10.21415 -10.05211 -9.74904 -9.57147 -9.42566 -8.88553 -8.54029 -8.46852 -8.45742 -6.69460 -5.80319 -3.23180 0.55152 1.50425 1.89934 2.39317 3.36201 3.39960 3.44544 3.46272 3.51793 4.47702 4.76841 4.94495 5.11101 5.15205 5.24894 5.30392 5.36307 5.37875 5.48358 5.49139 5.60940 5.67370 5.76406 5.89710 5.97254 5.98236 6.04978 6.08276 6.15732 6.24256 6.27569 6.33566 6.38776 6.44620 6.51742 6.65041 6.65742 6.76233 6.89004 6.99418 7.36701 7.66719 7.78622 7.82059 8.42548 8.47537 9.19015 9.82372 10.38375 11.27687 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016680 B = 0.003826 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.248456 B = 7316.350519 C = 7758.495352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 C -0.026 4.026 4 C -0.147 4.147 5 C -0.235 4.235 6 S 0.204 5.796 7 C -0.262 4.262 8 C 0.588 3.412 9 O -0.533 6.533 10 N -0.706 5.706 11 C 0.162 3.838 12 H 0.075 0.925 13 C -0.154 4.154 14 C 0.174 3.826 15 N -0.591 5.591 16 C -0.254 4.254 17 H 0.066 0.934 18 C 0.004 3.996 19 N -0.900 5.900 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.291 1.291 24 C 0.152 3.848 25 C -0.120 4.120 26 H 0.083 0.917 27 C -0.142 4.142 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.141 0.859 34 H 0.166 0.834 35 H 0.398 0.602 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.086 0.914 40 H 0.253 0.747 41 H 0.012 0.988 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.054 0.946 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.338 -0.647 -13.194 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 C -0.041 4.041 4 C -0.179 4.179 5 C -0.373 4.373 6 S 0.473 5.527 7 C -0.382 4.382 8 C 0.375 3.625 9 O -0.412 6.412 10 N -0.358 5.358 11 C 0.058 3.942 12 H 0.093 0.907 13 C -0.194 4.194 14 C 0.048 3.952 15 N -0.313 5.313 16 C -0.383 4.383 17 H 0.084 0.916 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.218 1.218 24 C 0.025 3.975 25 C -0.141 4.141 26 H 0.101 0.899 27 C -0.200 4.200 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.159 0.841 34 H 0.184 0.816 35 H 0.233 0.767 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.029 0.971 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.043 -0.110 -12.210 16.463 hybrid contribution 0.596 -0.624 -0.372 0.940 sum -10.446 -0.734 -12.582 16.370 Atomic orbital electron populations 1.21590 0.94502 1.01544 1.01623 1.20384 0.96332 0.90723 1.03521 1.19475 0.96807 0.97414 0.90435 1.19876 1.04241 0.94204 0.99555 1.25244 1.08530 1.01487 1.02065 1.83275 1.59708 1.11386 0.98359 1.24575 1.16176 0.99591 0.97904 1.16870 0.77850 0.85146 0.82685 1.90750 1.46753 1.18588 1.85120 1.46013 1.66572 1.16540 1.06627 1.20920 0.98015 0.95637 0.79610 0.90674 1.22567 0.97712 0.99057 1.00111 1.20724 0.93718 0.85707 0.95047 1.44078 1.25550 1.23542 1.38169 1.19211 0.89015 1.31657 0.98455 0.91615 1.25022 0.96295 1.01413 0.96754 1.70044 1.09891 1.49456 1.25068 0.86253 0.79922 0.77342 0.83420 1.20254 1.21576 1.21765 1.20907 0.86560 0.92922 0.97155 1.21962 0.96392 0.96454 0.99252 0.89860 1.21769 0.97347 1.00129 1.00743 0.92180 0.93457 0.92532 0.91597 0.88599 0.84106 0.81603 0.76653 0.91706 0.92620 0.96439 0.89542 0.93688 0.97066 0.92402 0.93209 0.92672 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 9.78 37.16 0.36 -1.18 16 2 C -0.07 -0.87 5.50 -27.89 -0.15 -1.03 16 3 C -0.03 -0.35 5.16 -105.48 -0.54 -0.89 16 4 C -0.15 -1.62 9.96 -41.41 -0.41 -2.03 16 5 C -0.24 -2.46 10.92 29.18 0.32 -2.14 16 6 S 0.20 2.50 22.16 -107.50 -2.38 0.12 16 7 C -0.26 -3.85 6.45 -36.79 -0.24 -4.09 16 8 C 0.59 9.94 7.74 -12.89 -0.10 9.84 16 9 O -0.53 -9.96 13.38 5.19 0.07 -9.89 16 10 N -0.71 -11.73 3.59 -55.10 -0.20 -11.93 16 11 C 0.16 2.81 2.21 -67.89 -0.15 2.66 16 12 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 13 C -0.15 -3.07 5.77 -26.62 -0.15 -3.22 16 14 C 0.17 4.11 5.05 -3.73 -0.02 4.09 16 15 N -0.59 -14.23 2.99 -172.34 -0.52 -14.75 16 16 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 17 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 18 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 19 N -0.90 -25.82 11.19 55.49 0.62 -25.20 16 20 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 C 0.15 2.97 5.50 -3.71 -0.02 2.95 16 25 C -0.12 -1.97 2.67 -90.50 -0.24 -2.21 16 26 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 27 C -0.14 -1.90 9.06 37.16 0.34 -1.56 16 28 H 0.06 0.80 7.60 -51.92 -0.39 0.41 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 32 H 0.10 1.42 6.33 -51.93 -0.33 1.09 16 33 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.40 6.46 5.84 -40.82 -0.24 6.22 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 39 H 0.09 2.34 6.04 -51.93 -0.31 2.02 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 41 H 0.01 0.22 6.64 -51.93 -0.34 -0.12 16 42 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.65 7.54 -51.93 -0.39 0.26 16 LS Contribution 365.14 15.07 5.50 5.50 Total: -1.00 -29.83 365.14 -10.17 -40.00 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.99 Total: 5.45 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -1.24 Total: -5.74 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.09 Total: -51.88 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.38 Total: 0.12 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.83 -10.17 -40.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945088096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.315 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds