Wall clock time and date at job start Tue Mar 31 2020 13:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47324 * 2 1 4 4 C 1.37467 * 123.35280 * 265.02794 * 3 2 1 5 5 C 1.33819 * 115.10033 * 179.72487 * 4 3 2 6 6 S 1.70615 * 110.95596 * 0.02562 * 5 4 3 7 7 C 1.36648 * 123.35063 * 84.72731 * 3 2 1 8 8 C 1.46586 * 125.45880 * 0.27267 * 7 3 2 9 9 O 1.21703 * 119.99864 * 0.02562 * 8 7 3 10 10 N 1.34779 * 120.00326 * 179.97438 * 8 7 3 11 11 C 1.46493 * 119.99877 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.46889 * 325.00501 * 11 10 8 13 13 C 1.53046 * 109.45776 * 84.97974 * 11 10 8 14 14 C 1.53161 * 109.32795 * 58.64113 * 13 11 10 15 15 N 1.46923 * 108.77145 * 54.64127 * 14 13 11 16 16 C 1.36938 * 120.62483 * 126.41346 * 15 14 13 17 17 H 1.08005 * 119.99431 * 207.65701 * 16 15 14 18 18 C 1.38809 * 120.00249 * 27.66441 * 16 15 14 19 19 N 1.31616 * 120.00366 * 17.37255 * 18 16 15 20 20 Si 1.86803 * 119.99871 * 197.37280 * 18 16 15 21 21 H 1.48501 * 109.47245 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46914 * 119.99483 * 20 18 16 23 23 H 1.48493 * 109.47315 * 239.99828 * 20 18 16 24 24 C 1.46925 * 118.73865 * 306.39449 * 15 14 13 25 25 C 1.53045 * 109.45980 * 205.02790 * 11 10 8 26 26 H 1.08996 * 109.49600 * 181.39877 * 25 11 10 27 27 C 1.53002 * 109.49590 * 61.33617 * 25 11 10 28 28 H 1.09010 * 109.47216 * 299.99673 * 1 2 3 29 29 H 1.09000 * 109.47728 * 59.99529 * 1 2 3 30 30 H 1.08998 * 109.47410 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46685 * 239.99974 * 2 1 3 32 32 H 1.08995 * 109.47293 * 120.00331 * 2 1 3 33 33 H 1.07997 * 122.44985 * 359.75093 * 4 3 2 34 34 H 1.08006 * 124.52313 * 179.97438 * 5 4 3 35 35 H 0.96999 * 119.99837 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.49551 * 178.60114 * 13 11 10 37 37 H 1.09001 * 109.49769 * 298.69943 * 13 11 10 38 38 H 1.09003 * 109.58857 * 294.85886 * 14 13 11 39 39 H 1.09000 * 109.59161 * 174.43360 * 14 13 11 40 40 H 0.96996 * 120.00160 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.58401 * 293.81594 * 24 15 14 42 42 H 1.09002 * 109.58263 * 173.39651 * 24 15 14 43 43 H 1.08999 * 109.47017 * 59.99250 * 27 25 11 44 44 H 1.08997 * 109.47004 * 180.02562 * 27 25 11 45 45 H 1.09004 * 109.46513 * 300.00152 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3781 2.1001 -1.1439 5 6 2.7984 3.3562 -0.9531 6 16 2.7826 3.7597 0.7046 7 6 2.1839 2.1640 1.1366 8 6 1.8942 1.7044 2.4981 9 8 1.4825 0.5744 2.6842 10 7 2.0847 2.5330 3.5439 11 6 1.7946 2.0738 4.9045 12 1 0.9349 1.4039 4.8862 13 6 3.0100 1.3285 5.4610 14 6 4.2242 2.2620 5.4532 15 7 3.8820 3.4891 6.1851 16 6 4.6689 3.9291 7.2158 17 1 4.2366 4.5162 8.0126 18 6 6.0221 3.6206 7.2365 19 7 6.6218 3.2162 6.1369 20 14 6.9922 3.7794 8.8250 21 1 6.0928 4.2489 9.9094 22 1 7.5609 2.4576 9.1919 23 1 8.0937 4.7573 8.6367 24 6 2.6796 4.2353 5.7898 25 6 1.4826 3.2796 5.7939 26 1 1.2910 2.9407 6.8120 27 6 0.2473 4.0048 5.2561 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.3148 1.6530 -2.1250 34 1 3.1073 4.0250 -1.7429 35 1 2.4131 3.4335 3.3957 36 1 2.8039 1.0082 6.4823 37 1 3.2176 0.4567 4.8406 38 1 4.4871 2.5111 4.4251 39 1 5.0668 1.7697 5.9389 40 1 7.5675 3.0010 6.1512 41 1 2.8166 4.6453 4.7892 42 1 2.5031 5.0452 6.4978 43 1 -0.6032 3.3231 5.2568 44 1 0.0258 4.8637 5.8895 45 1 0.4399 4.3443 4.2383 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000945088096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:50 Heat of formation + Delta-G solvation = -11.600105 kcal Electronic energy + Delta-G solvation = -26027.256820 eV Core-core repulsion = 22556.704990 eV Total energy + Delta-G solvation = -3470.551830 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.33591 -39.75198 -38.45923 -35.98898 -34.07667 -33.59717 -32.90823 -32.01066 -30.08457 -27.41814 -27.16119 -26.12995 -23.95660 -23.29649 -22.89357 -22.43997 -20.24729 -19.91468 -19.02412 -18.61497 -17.05338 -16.90704 -16.69728 -16.22785 -15.89260 -15.66127 -15.47374 -15.05155 -14.85009 -14.77807 -14.64092 -14.42687 -14.18311 -13.82841 -13.55367 -13.27716 -13.13187 -12.98125 -12.82527 -12.73060 -12.55569 -12.42778 -12.33466 -12.15582 -11.97758 -11.94498 -11.68801 -11.63386 -11.48203 -11.12340 -10.85709 -10.54182 -10.10681 -9.69918 -9.41514 -8.67834 -7.86909 -5.32020 -0.43967 0.53840 0.98206 1.44533 1.45672 1.48636 1.58236 2.14915 2.26767 2.51233 3.28403 3.64124 3.73021 3.89638 3.91276 4.06155 4.10962 4.18899 4.33438 4.40464 4.49198 4.55816 4.58076 4.64749 4.75656 4.78758 4.79392 4.89859 4.97280 5.00739 5.07922 5.08652 5.12623 5.16055 5.28523 5.34053 5.40863 5.43628 5.49423 5.54979 5.58935 5.65363 5.72662 6.38395 6.50690 7.14284 7.17751 7.85473 8.37205 9.19175 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016680 B = 0.003826 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.248456 B = 7316.350519 C = 7758.495352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.023 4.023 4 C -0.155 4.155 5 C -0.214 4.214 6 S 0.196 5.804 7 C -0.303 4.303 8 C 0.585 3.415 9 O -0.559 6.559 10 N -0.706 5.706 11 C 0.168 3.832 12 H 0.081 0.919 13 C -0.143 4.143 14 C 0.189 3.811 15 N -0.606 5.606 16 C -0.260 4.260 17 H 0.070 0.930 18 C -0.049 4.049 19 N -0.934 5.934 20 Si 0.963 3.037 21 H -0.265 1.265 22 H -0.294 1.294 23 H -0.293 1.293 24 C 0.149 3.851 25 C -0.107 4.107 26 H 0.082 0.918 27 C -0.133 4.133 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.172 0.828 34 H 0.201 0.799 35 H 0.399 0.601 36 H 0.065 0.935 37 H 0.047 0.953 38 H -0.003 1.003 39 H 0.048 0.952 40 H 0.248 0.752 41 H 0.017 0.983 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.751 0.258 -14.618 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.111 4.111 3 C -0.039 4.039 4 C -0.185 4.185 5 C -0.351 4.351 6 S 0.465 5.535 7 C -0.423 4.423 8 C 0.373 3.627 9 O -0.440 6.440 10 N -0.356 5.356 11 C 0.064 3.936 12 H 0.099 0.901 13 C -0.183 4.183 14 C 0.063 3.937 15 N -0.329 5.329 16 C -0.390 4.390 17 H 0.088 0.912 18 C -0.244 4.244 19 N -0.580 5.580 20 Si 0.792 3.208 21 H -0.189 1.189 22 H -0.221 1.221 23 H -0.220 1.220 24 C 0.024 3.976 25 C -0.128 4.128 26 H 0.100 0.900 27 C -0.191 4.191 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.189 0.811 34 H 0.218 0.782 35 H 0.235 0.765 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.015 0.985 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.034 0.966 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.491 0.819 -13.631 18.507 hybrid contribution 1.031 -0.895 -0.026 1.366 sum -11.459 -0.076 -13.657 17.828 Atomic orbital electron populations 1.21531 0.93732 1.02140 1.01199 1.20404 0.96981 0.90470 1.03262 1.19818 0.95567 0.97622 0.90863 1.20131 1.04079 0.94296 1.00008 1.25675 1.06327 1.01688 1.01460 1.83281 1.59781 1.10195 1.00229 1.24458 1.19257 1.01458 0.97132 1.17224 0.77106 0.84731 0.83611 1.90726 1.48000 1.19564 1.85755 1.45954 1.66748 1.16617 1.06319 1.20799 0.96577 0.95975 0.80255 0.90099 1.22391 0.97459 0.98191 1.00237 1.20382 0.93965 0.86223 0.93169 1.44274 1.26556 1.24168 1.37934 1.19553 0.89421 1.30843 0.99195 0.91219 1.25743 0.97365 1.01939 0.99375 1.70194 1.09738 1.51104 1.26937 0.85270 0.78487 0.76721 0.80342 1.18910 1.22135 1.21965 1.21078 0.85847 0.93426 0.97284 1.21817 0.96377 0.95379 0.99207 0.89988 1.21698 0.95844 1.00558 1.01017 0.94698 0.91623 0.91482 0.89041 0.91585 0.81057 0.78236 0.76483 0.91682 0.93445 0.98536 0.93396 0.94286 0.96567 0.92004 0.91941 0.91064 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.78 71.98 0.70 -2.09 16 2 C -0.07 -1.72 5.50 29.85 0.16 -1.55 16 3 C -0.02 -0.57 5.16 -20.42 -0.11 -0.67 16 4 C -0.15 -2.93 9.96 21.08 0.21 -2.72 16 5 C -0.21 -3.81 10.92 66.81 0.73 -3.08 16 6 S 0.20 4.61 22.16 -56.49 -1.25 3.35 16 7 C -0.30 -8.85 6.45 24.08 0.16 -8.69 16 8 C 0.59 20.15 7.74 86.42 0.67 20.82 16 9 O -0.56 -21.53 13.38 -4.36 -0.06 -21.58 16 10 N -0.71 -23.66 3.59 -446.45 -1.60 -25.27 16 11 C 0.17 5.83 2.21 45.02 0.10 5.93 16 12 H 0.08 2.76 7.58 -2.39 -0.02 2.75 16 13 C -0.14 -5.84 5.77 30.66 0.18 -5.67 16 14 C 0.19 9.28 5.05 86.35 0.44 9.72 16 15 N -0.61 -29.64 2.99 -699.17 -2.09 -31.73 16 16 C -0.26 -14.03 9.58 84.03 0.81 -13.23 16 17 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 18 C -0.05 -2.71 4.91 84.86 0.42 -2.29 16 19 N -0.93 -55.33 11.19 21.65 0.24 -55.08 16 20 Si 0.96 44.79 29.59 68.60 2.03 46.82 16 21 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 C 0.15 5.76 5.50 86.36 0.48 6.24 16 25 C -0.11 -3.41 2.67 -10.72 -0.03 -3.43 16 26 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 27 C -0.13 -3.25 9.06 71.98 0.65 -2.60 16 28 H 0.03 0.92 7.60 -2.38 -0.02 0.91 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.67 8.12 -2.39 -0.02 1.65 16 32 H 0.07 2.00 6.33 -2.39 -0.02 1.98 16 33 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 34 H 0.20 2.16 8.06 -2.91 -0.02 2.13 16 35 H 0.40 13.05 5.84 -92.71 -0.54 12.51 16 36 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.00 -0.18 7.74 -2.39 -0.02 -0.20 16 39 H 0.05 2.72 6.04 -2.39 -0.01 2.71 16 40 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 41 H 0.02 0.63 6.64 -2.39 -0.02 0.61 16 42 H 0.06 2.33 7.93 -2.39 -0.02 2.31 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.05 1.28 7.54 -2.38 -0.02 1.26 16 Total: -1.00 -66.57 365.14 3.27 -63.30 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.45 Total: 23.52 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 5.56 Total: -3.33 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -3.46 Total: -112.08 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.06 Total: -21.58 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -1.25 Total: 3.35 kcal Total: -66.57 3.27 -63.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945088096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.700 kcal (2) G-P(sol) polarization free energy of solvation -66.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds