Wall clock time and date at job start Tue Mar 31 2020 13:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47279 * 2 1 4 4 C 1.33814 * 124.52012 * 89.71675 * 3 2 1 5 5 C 1.37477 * 115.10047 * 179.82937 * 4 3 2 6 6 C 1.36655 * 113.29217 * 0.45501 * 5 4 3 7 7 C 1.46585 * 125.45359 * 179.72345 * 6 5 4 8 8 O 1.21701 * 120.00309 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99418 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99641 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.46040 * 325.03099 * 10 9 7 12 12 C 1.53041 * 109.45622 * 85.00248 * 10 9 7 13 13 C 1.53184 * 109.31407 * 58.65687 * 12 10 9 14 14 N 1.46929 * 108.77830 * 54.63336 * 13 12 10 15 15 C 1.36931 * 120.63197 * 126.41449 * 14 13 12 16 16 H 1.08002 * 119.99781 * 209.01893 * 15 14 13 17 17 C 1.38805 * 120.00498 * 29.01733 * 15 14 13 18 18 N 1.31620 * 119.99755 * 15.00871 * 17 15 14 19 19 Si 1.86797 * 120.00541 * 195.01647 * 17 15 14 20 20 H 1.48501 * 109.47353 * 59.99526 * 19 17 15 21 21 H 1.48499 * 109.47369 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46642 * 299.99882 * 19 17 15 23 23 C 1.46928 * 118.73491 * 306.39437 * 14 13 12 24 24 H 1.09004 * 109.58629 * 293.81814 * 23 14 13 25 25 C 1.53001 * 109.58644 * 173.39769 * 23 14 13 26 26 C 1.53035 * 109.45802 * 205.07116 * 10 9 7 27 27 S 1.70612 * 124.52125 * 270.02461 * 3 2 1 28 28 H 1.09005 * 109.46896 * 60.00190 * 1 2 3 29 29 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47367 * 299.99801 * 1 2 3 31 31 H 1.09006 * 109.47476 * 239.99634 * 2 1 3 32 32 H 1.08997 * 109.47100 * 119.99986 * 2 1 3 33 33 H 1.07996 * 122.45273 * 0.02562 * 4 3 2 34 34 H 1.08000 * 123.35439 * 180.23899 * 5 4 3 35 35 H 0.96995 * 120.00616 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.49073 * 178.60895 * 12 10 9 37 37 H 1.08993 * 109.49757 * 298.66458 * 12 10 9 38 38 H 1.09002 * 109.58752 * 174.41589 * 13 12 10 39 39 H 1.09000 * 109.58583 * 294.70434 * 13 12 10 40 40 H 0.97004 * 120.00095 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.47381 * 59.99313 * 25 23 14 42 42 H 1.08999 * 109.47083 * 180.02562 * 25 23 14 43 43 H 1.09007 * 109.46823 * 299.99535 * 25 23 14 44 44 H 1.09004 * 109.49963 * 61.29917 * 26 10 9 45 45 H 1.09006 * 109.49699 * 181.39494 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2800 2.1376 1.1025 5 6 2.7367 3.4146 0.8775 6 6 2.8456 3.7237 -0.4491 7 6 3.2987 5.0092 -0.9883 8 8 3.6162 5.9083 -0.2321 9 7 3.3638 5.1954 -2.3216 10 6 3.8161 6.4805 -2.8605 11 1 3.4759 7.2868 -2.2106 12 6 5.3448 6.4936 -2.9316 13 6 5.8207 5.3384 -3.8180 14 7 5.1549 5.4390 -5.1239 15 6 5.8870 5.4524 -6.2811 16 1 5.5119 5.9705 -7.1513 17 6 7.1111 4.8003 -6.3356 18 7 7.4370 3.9331 -5.4007 19 14 8.2961 5.1536 -7.7357 20 1 8.6571 6.5941 -7.7273 21 1 9.5233 4.3353 -7.5641 22 1 7.6501 4.8128 -9.0288 23 6 3.6887 5.5243 -5.1646 24 1 3.2582 4.5895 -4.8056 25 6 3.2298 5.7856 -6.6006 26 6 3.2367 6.6774 -4.2631 27 16 2.3541 2.3326 -1.4057 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1349 1.7408 2.0964 34 1 2.9814 4.1060 1.6703 35 1 3.1104 4.4790 -2.9243 36 1 5.6811 7.4399 -3.3555 37 1 5.7567 6.3773 -1.9292 38 1 6.9005 5.4019 -3.9526 39 1 5.5663 4.3884 -3.3480 40 1 8.2926 3.4776 -5.4386 41 1 3.5632 4.9703 -7.2426 42 1 2.1420 5.8490 -6.6285 43 1 3.6572 6.7242 -6.9535 44 1 2.1481 6.6913 -4.2084 45 1 3.5928 7.6220 -4.6745 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947516286.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:13 Heat of formation + Delta-G solvation = 3.967303 kcal Electronic energy + Delta-G solvation = -25473.132374 eV Core-core repulsion = 22003.255597 eV Total energy + Delta-G solvation = -3469.876776 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.80908 -38.26942 -37.35309 -34.29325 -33.89026 -32.35973 -31.33967 -29.83330 -28.56417 -26.41880 -25.42695 -24.83957 -22.60204 -22.19882 -21.60644 -20.60424 -19.20337 -18.70031 -17.83149 -16.46576 -16.05737 -15.53230 -15.20996 -14.87302 -14.72317 -14.38678 -14.09993 -13.94933 -13.71277 -13.47684 -13.15560 -12.97372 -12.80459 -12.46950 -12.41850 -11.98760 -11.86078 -11.69582 -11.42608 -11.33496 -11.21100 -10.99226 -10.85179 -10.69082 -10.62685 -10.42150 -10.15385 -10.08904 -9.76187 -9.68468 -9.30272 -8.80639 -8.61649 -8.52377 -8.44735 -6.64062 -5.77194 -3.21689 0.52290 1.44553 1.87787 2.39543 3.37815 3.39765 3.44376 3.44964 3.49948 4.46598 4.48678 4.77430 4.98765 4.99787 5.17598 5.31536 5.33746 5.36127 5.40098 5.46585 5.56589 5.61842 5.66755 5.67678 5.89127 5.95056 5.98646 6.07960 6.15798 6.22731 6.30124 6.33030 6.36188 6.43726 6.56187 6.63325 6.76903 6.94148 7.01249 7.03774 7.38885 7.70078 7.79275 7.81823 8.44155 8.46285 9.22013 9.85524 10.42110 11.30792 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015511 B = 0.003559 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.699894 B = 7865.756810 C = 8387.982569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 C -0.199 4.199 4 C -0.154 4.154 5 C -0.059 4.059 6 C -0.260 4.260 7 C 0.588 3.412 8 O -0.539 6.539 9 N -0.708 5.708 10 C 0.155 3.845 11 H 0.075 0.925 12 C -0.154 4.154 13 C 0.175 3.825 14 N -0.586 5.586 15 C -0.252 4.252 16 H 0.070 0.930 17 C 0.004 3.996 18 N -0.903 5.903 19 Si 0.901 3.099 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.168 3.832 24 H 0.018 0.982 25 C -0.137 4.137 26 C -0.140 4.140 27 S 0.211 5.789 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.141 0.859 34 H 0.151 0.849 35 H 0.398 0.602 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.017 0.983 40 H 0.253 0.747 41 H 0.062 0.938 42 H 0.038 0.962 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.676 -5.104 9.574 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.319 4.319 4 C -0.185 4.185 5 C -0.092 4.092 6 C -0.381 4.381 7 C 0.374 3.626 8 O -0.419 6.419 9 N -0.359 5.359 10 C 0.051 3.949 11 H 0.093 0.907 12 C -0.194 4.194 13 C 0.049 3.951 14 N -0.310 5.310 15 C -0.381 4.381 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.547 5.547 19 Si 0.731 3.269 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.209 1.209 23 C 0.061 3.939 24 H 0.035 0.965 25 C -0.194 4.194 26 C -0.179 4.179 27 S 0.480 5.520 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.159 0.841 34 H 0.168 0.832 35 H 0.234 0.766 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.035 0.965 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.381 -4.845 8.501 16.577 hybrid contribution 0.775 -0.021 0.693 1.040 sum -12.606 -4.866 9.194 16.344 Atomic orbital electron populations 1.21801 0.94163 1.02059 1.02571 1.20143 0.96262 0.89514 1.03560 1.24271 1.07452 1.02095 0.98060 1.19902 1.05036 0.94186 0.99384 1.20697 0.97136 0.96235 0.95166 1.24715 1.15794 0.99528 0.98064 1.16933 0.77594 0.85473 0.82609 1.90787 1.50110 1.42792 1.58190 1.46046 1.66756 1.17298 1.05779 1.20938 0.95556 0.84107 0.94309 0.90711 1.22567 0.93994 1.02430 1.00451 1.20720 0.99014 0.92008 0.83335 1.44128 0.98647 1.85635 1.02567 1.19126 1.00729 1.26579 0.91693 0.91287 1.25072 1.00123 0.96406 0.97900 1.70006 1.22533 1.26921 1.35227 0.86402 0.80718 0.77741 0.82056 1.21090 1.21718 1.20950 1.20384 0.86572 0.93488 0.93499 0.96467 1.21802 0.97983 1.02404 0.97232 1.22382 0.98958 1.01840 0.94760 1.83231 1.59142 1.02465 1.07196 0.92329 0.91953 0.92256 0.90507 0.89904 0.84144 0.83159 0.76600 0.91659 0.92724 0.89442 0.96490 0.93657 0.91878 0.94292 0.92640 0.92548 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.06 -0.45 6.36 -27.88 -0.18 -0.63 16 3 C -0.20 -2.14 5.53 -35.86 -0.20 -2.34 16 4 C -0.15 -1.69 10.00 -41.41 -0.41 -2.11 16 5 C -0.06 -0.78 10.01 -40.43 -0.40 -1.19 16 6 C -0.26 -3.90 6.45 -36.79 -0.24 -4.14 16 7 C 0.59 10.39 7.75 -12.89 -0.10 10.29 16 8 O -0.54 -10.95 16.50 5.19 0.09 -10.86 16 9 N -0.71 -12.15 4.26 -55.10 -0.23 -12.39 16 10 C 0.15 2.76 2.78 -67.89 -0.19 2.57 16 11 H 0.07 1.33 7.57 -51.93 -0.39 0.93 16 12 C -0.15 -3.12 5.77 -26.61 -0.15 -3.27 16 13 C 0.17 4.15 5.03 -3.71 -0.02 4.13 16 14 N -0.59 -13.93 2.99 -164.78 -0.49 -14.42 16 15 C -0.25 -6.58 8.60 -15.06 -0.13 -6.71 16 16 H 0.07 1.75 6.21 -52.49 -0.33 1.43 16 17 C 0.00 0.10 4.96 -17.43 -0.09 0.01 16 18 N -0.90 -25.73 11.14 55.49 0.62 -25.11 16 19 Si 0.90 21.39 29.58 -169.99 -5.03 16.36 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 C 0.17 3.26 3.20 -67.60 -0.22 3.04 16 24 H 0.02 0.35 6.64 -51.93 -0.34 0.00 16 25 C -0.14 -2.44 7.94 37.16 0.30 -2.14 16 26 C -0.14 -2.34 5.07 -26.62 -0.13 -2.48 16 27 S 0.21 2.64 22.10 -107.50 -2.38 0.26 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.15 1.90 8.06 -52.49 -0.42 1.47 16 35 H 0.40 6.58 5.98 -40.82 -0.24 6.33 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 39 H 0.02 0.43 7.74 -51.93 -0.40 0.02 16 40 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 41 H 0.06 1.22 7.62 -51.93 -0.40 0.83 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 1.00 7.45 -51.93 -0.39 0.62 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -30.25 368.36 -10.69 -40.94 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.02 Total: 5.29 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.80 Total: -5.62 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.11 Total: -51.92 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.38 Total: 0.26 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.25 -10.69 -40.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947516286.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.909 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds