Wall clock time and date at job start Tue Mar 31 2020 13:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47279 * 2 1 4 4 C 1.33814 * 124.52012 * 89.71675 * 3 2 1 5 5 C 1.37477 * 115.10047 * 179.82937 * 4 3 2 6 6 C 1.36655 * 113.29217 * 0.45501 * 5 4 3 7 7 C 1.46585 * 125.45359 * 179.72345 * 6 5 4 8 8 O 1.21701 * 120.00309 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99418 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99641 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.46040 * 325.03099 * 10 9 7 12 12 C 1.53041 * 109.45622 * 85.00248 * 10 9 7 13 13 C 1.53184 * 109.31407 * 58.65687 * 12 10 9 14 14 N 1.46929 * 108.77830 * 54.63336 * 13 12 10 15 15 C 1.36931 * 120.63197 * 126.41449 * 14 13 12 16 16 H 1.08002 * 119.99781 * 209.01893 * 15 14 13 17 17 C 1.38805 * 120.00498 * 29.01733 * 15 14 13 18 18 N 1.31620 * 119.99755 * 15.00871 * 17 15 14 19 19 Si 1.86797 * 120.00541 * 195.01647 * 17 15 14 20 20 H 1.48501 * 109.47353 * 59.99526 * 19 17 15 21 21 H 1.48499 * 109.47369 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46642 * 299.99882 * 19 17 15 23 23 C 1.46928 * 118.73491 * 306.39437 * 14 13 12 24 24 H 1.09004 * 109.58629 * 293.81814 * 23 14 13 25 25 C 1.53001 * 109.58644 * 173.39769 * 23 14 13 26 26 C 1.53035 * 109.45802 * 205.07116 * 10 9 7 27 27 S 1.70612 * 124.52125 * 270.02461 * 3 2 1 28 28 H 1.09005 * 109.46896 * 60.00190 * 1 2 3 29 29 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47367 * 299.99801 * 1 2 3 31 31 H 1.09006 * 109.47476 * 239.99634 * 2 1 3 32 32 H 1.08997 * 109.47100 * 119.99986 * 2 1 3 33 33 H 1.07996 * 122.45273 * 0.02562 * 4 3 2 34 34 H 1.08000 * 123.35439 * 180.23899 * 5 4 3 35 35 H 0.96995 * 120.00616 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.49073 * 178.60895 * 12 10 9 37 37 H 1.08993 * 109.49757 * 298.66458 * 12 10 9 38 38 H 1.09002 * 109.58752 * 174.41589 * 13 12 10 39 39 H 1.09000 * 109.58583 * 294.70434 * 13 12 10 40 40 H 0.97004 * 120.00095 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.47381 * 59.99313 * 25 23 14 42 42 H 1.08999 * 109.47083 * 180.02562 * 25 23 14 43 43 H 1.09007 * 109.46823 * 299.99535 * 25 23 14 44 44 H 1.09004 * 109.49963 * 61.29917 * 26 10 9 45 45 H 1.09006 * 109.49699 * 181.39494 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2800 2.1376 1.1025 5 6 2.7367 3.4146 0.8775 6 6 2.8456 3.7237 -0.4491 7 6 3.2987 5.0092 -0.9883 8 8 3.6162 5.9083 -0.2321 9 7 3.3638 5.1954 -2.3216 10 6 3.8161 6.4805 -2.8605 11 1 3.4759 7.2868 -2.2106 12 6 5.3448 6.4936 -2.9316 13 6 5.8207 5.3384 -3.8180 14 7 5.1549 5.4390 -5.1239 15 6 5.8870 5.4524 -6.2811 16 1 5.5119 5.9705 -7.1513 17 6 7.1111 4.8003 -6.3356 18 7 7.4370 3.9331 -5.4007 19 14 8.2961 5.1536 -7.7357 20 1 8.6571 6.5941 -7.7273 21 1 9.5233 4.3353 -7.5641 22 1 7.6501 4.8128 -9.0288 23 6 3.6887 5.5243 -5.1646 24 1 3.2582 4.5895 -4.8056 25 6 3.2298 5.7856 -6.6006 26 6 3.2367 6.6774 -4.2631 27 16 2.3541 2.3326 -1.4057 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1349 1.7408 2.0964 34 1 2.9814 4.1060 1.6703 35 1 3.1104 4.4790 -2.9243 36 1 5.6811 7.4399 -3.3555 37 1 5.7567 6.3773 -1.9292 38 1 6.9005 5.4019 -3.9526 39 1 5.5663 4.3884 -3.3480 40 1 8.2926 3.4776 -5.4386 41 1 3.5632 4.9703 -7.2426 42 1 2.1420 5.8490 -6.6285 43 1 3.6572 6.7242 -6.9535 44 1 2.1481 6.6913 -4.2084 45 1 3.5928 7.6220 -4.6745 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947516286.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:12 Heat of formation + Delta-G solvation = -12.556591 kcal Electronic energy + Delta-G solvation = -25473.848903 eV Core-core repulsion = 22003.255597 eV Total energy + Delta-G solvation = -3470.593306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.22090 -39.51700 -38.64285 -35.93336 -34.67747 -34.11071 -32.93373 -31.53923 -29.60302 -27.99599 -26.87895 -26.16332 -23.90293 -23.32161 -22.93932 -22.21031 -20.36678 -20.27095 -18.94038 -18.24845 -17.16078 -17.12861 -16.70291 -16.27837 -15.96804 -15.75523 -15.51182 -15.21125 -14.97351 -14.73983 -14.63143 -14.27062 -14.10568 -13.82655 -13.40956 -13.30777 -13.13818 -12.85117 -12.79999 -12.67136 -12.50411 -12.40961 -12.31673 -12.18753 -12.06052 -11.98705 -11.72887 -11.67366 -11.44154 -11.16635 -11.00923 -10.49557 -10.17319 -9.64550 -9.56055 -8.60059 -7.81239 -5.27166 -0.50799 0.45158 0.91380 1.39070 1.47896 1.50665 1.56076 2.09876 2.21337 2.53961 3.34099 3.60503 3.69489 3.76422 3.96800 4.05825 4.14486 4.17704 4.34445 4.41102 4.41418 4.48670 4.58176 4.64367 4.76955 4.80328 4.90627 4.91933 4.94887 5.00924 5.05285 5.08580 5.14431 5.14932 5.20984 5.35343 5.39270 5.43752 5.49924 5.53215 5.56872 5.73596 5.75991 6.42704 6.45158 7.08249 7.19756 7.91858 8.43724 9.24865 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015511 B = 0.003559 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.699894 B = 7865.756810 C = 8387.982569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.058 4.058 3 C -0.181 4.181 4 C -0.160 4.160 5 C -0.051 4.051 6 C -0.302 4.302 7 C 0.586 3.414 8 O -0.575 6.575 9 N -0.706 5.706 10 C 0.158 3.842 11 H 0.082 0.918 12 C -0.142 4.142 13 C 0.188 3.812 14 N -0.600 5.600 15 C -0.249 4.249 16 H 0.078 0.922 17 C -0.052 4.052 18 N -0.937 5.937 19 Si 0.960 3.040 20 H -0.281 1.281 21 H -0.300 1.300 22 H -0.274 1.274 23 C 0.159 3.841 24 H 0.019 0.981 25 C -0.130 4.130 26 C -0.126 4.126 27 S 0.207 5.793 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.171 0.829 34 H 0.151 0.849 35 H 0.401 0.599 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.049 0.951 39 H -0.005 1.005 40 H 0.245 0.755 41 H 0.042 0.958 42 H 0.077 0.923 43 H 0.051 0.949 44 H 0.090 0.910 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.933 -5.622 9.658 19.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 C -0.301 4.301 4 C -0.189 4.189 5 C -0.085 4.085 6 C -0.422 4.422 7 C 0.374 3.626 8 O -0.457 6.457 9 N -0.356 5.356 10 C 0.054 3.946 11 H 0.100 0.900 12 C -0.183 4.183 13 C 0.062 3.938 14 N -0.324 5.324 15 C -0.379 4.379 16 H 0.095 0.905 17 C -0.247 4.247 18 N -0.583 5.583 19 Si 0.789 3.211 20 H -0.208 1.208 21 H -0.227 1.227 22 H -0.200 1.200 23 C 0.053 3.947 24 H 0.036 0.964 25 C -0.187 4.187 26 C -0.166 4.166 27 S 0.476 5.524 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.188 0.812 34 H 0.169 0.831 35 H 0.238 0.762 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.013 0.987 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.108 0.892 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.678 -5.355 8.559 18.648 hybrid contribution 1.399 0.054 0.727 1.578 sum -14.279 -5.300 9.287 17.839 Atomic orbital electron populations 1.21798 0.93097 1.03172 1.02332 1.20324 0.97056 0.87615 1.04724 1.24717 1.05392 1.03046 0.96977 1.20134 1.04759 0.93168 1.00876 1.20951 0.95834 0.97201 0.94559 1.24539 1.18945 0.99511 0.99185 1.17304 0.76775 0.86135 0.82363 1.90750 1.51865 1.44267 1.58822 1.46001 1.66584 1.17134 1.05909 1.20864 0.93511 0.84800 0.95411 0.90042 1.22387 0.96204 1.00803 0.98861 1.20376 0.96898 0.92316 0.84183 1.44345 1.00683 1.85659 1.01758 1.19486 1.00806 1.25210 0.92423 0.90473 1.25772 1.01907 0.96869 1.00187 1.70173 1.22471 1.28495 1.37209 0.85452 0.78474 0.77265 0.79915 1.20782 1.22678 1.19951 1.20655 0.83859 0.94636 0.95517 0.96384 1.21737 1.00424 1.01266 0.95297 1.22266 1.00856 1.00549 0.92884 1.83202 1.59218 1.01919 1.08087 0.93073 0.90218 0.92030 0.90138 0.87949 0.81165 0.83106 0.76247 0.91481 0.93757 0.93277 0.98733 0.94549 0.93927 0.90443 0.92965 0.89183 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.89 71.98 0.71 -0.91 16 2 C -0.06 -0.77 6.36 29.85 0.19 -0.58 16 3 C -0.18 -3.53 5.53 24.68 0.14 -3.39 16 4 C -0.16 -3.15 10.00 21.08 0.21 -2.94 16 5 C -0.05 -1.32 10.01 21.72 0.22 -1.10 16 6 C -0.30 -9.02 6.45 24.08 0.16 -8.87 16 7 C 0.59 21.00 7.75 86.42 0.67 21.67 16 8 O -0.57 -23.80 16.50 -4.35 -0.07 -23.87 16 9 N -0.71 -24.21 4.26 -446.45 -1.90 -26.12 16 10 C 0.16 5.54 2.78 45.02 0.13 5.66 16 11 H 0.08 2.81 7.57 -2.38 -0.02 2.79 16 12 C -0.14 -5.86 5.77 30.67 0.18 -5.69 16 13 C 0.19 9.25 5.03 86.36 0.43 9.68 16 14 N -0.60 -28.72 2.99 -675.24 -2.02 -30.74 16 15 C -0.25 -13.07 8.60 84.03 0.72 -12.34 16 16 H 0.08 3.87 6.21 -2.91 -0.02 3.85 16 17 C -0.05 -2.89 4.96 84.86 0.42 -2.46 16 18 N -0.94 -55.33 11.14 21.65 0.24 -55.09 16 19 Si 0.96 44.64 29.58 68.60 2.03 46.67 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 C 0.16 5.98 3.20 44.97 0.14 6.12 16 24 H 0.02 0.70 6.64 -2.38 -0.02 0.69 16 25 C -0.13 -4.34 7.94 71.98 0.57 -3.77 16 26 C -0.13 -3.96 5.07 30.67 0.16 -3.80 16 27 S 0.21 5.03 22.10 -56.49 -1.25 3.79 16 28 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 34 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 35 H 0.40 13.21 5.98 -92.71 -0.55 12.65 16 36 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.05 2.78 6.06 -2.39 -0.01 2.77 16 39 H -0.01 -0.28 7.74 -2.39 -0.02 -0.30 16 40 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.04 1.58 7.62 -2.39 -0.02 1.56 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.05 1.77 7.45 -2.38 -0.02 1.75 16 44 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 45 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 Total: -1.00 -67.24 368.36 2.50 -64.74 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.43 Total: 23.35 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 5.04 Total: -2.72 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -3.68 Total: -111.95 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.07 Total: -23.87 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -1.25 Total: 3.79 kcal Total: -67.24 2.50 -64.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947516286.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.185 kcal (2) G-P(sol) polarization free energy of solvation -67.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds