Wall clock time and date at job start Tue Mar 31 2020 13:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47187 * 2 1 4 4 C 1.33819 * 124.52179 * 90.00448 * 3 2 1 5 5 C 1.37476 * 115.09963 * 179.72671 * 4 3 2 6 6 C 1.36652 * 113.29522 * 0.45287 * 5 4 3 7 7 C 1.46582 * 125.45570 * 179.83839 * 6 5 4 8 8 O 1.21704 * 119.99718 * 359.71484 * 7 6 5 9 9 N 1.34770 * 120.00133 * 179.71778 * 7 6 5 10 10 C 1.46495 * 120.00354 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.45979 * 35.02015 * 10 9 7 12 12 C 1.53352 * 109.40376 * 275.11910 * 10 9 7 13 13 C 1.53200 * 109.14750 * 178.68069 * 12 10 9 14 14 N 1.46921 * 108.89149 * 54.57573 * 13 12 10 15 15 C 1.36940 * 120.62784 * 126.34534 * 14 13 12 16 16 H 1.07994 * 119.99966 * 207.71018 * 15 14 13 17 17 C 1.38815 * 120.00175 * 27.70890 * 15 14 13 18 18 N 1.31620 * 120.00010 * 17.38573 * 17 15 14 19 19 Si 1.86798 * 120.00070 * 197.38507 * 17 15 14 20 20 H 1.48503 * 109.47325 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47084 * 120.00070 * 19 17 15 22 22 H 1.48498 * 109.47107 * 240.00011 * 19 17 15 23 23 C 1.46923 * 118.74265 * 306.31945 * 14 13 12 24 24 H 1.08998 * 109.58641 * 173.40039 * 23 14 13 25 25 C 1.53004 * 109.58413 * 293.82383 * 23 14 13 26 26 C 1.53032 * 109.46587 * 154.99705 * 10 9 7 27 27 S 1.70615 * 124.52523 * 269.97659 * 3 2 1 28 28 H 1.09004 * 109.47019 * 59.99818 * 1 2 3 29 29 H 1.09000 * 109.47239 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46745 * 299.99796 * 1 2 3 31 31 H 1.09001 * 109.46745 * 240.00204 * 2 1 3 32 32 H 1.08996 * 109.47337 * 120.00248 * 2 1 3 33 33 H 1.07995 * 122.44643 * 359.95144 * 4 3 2 34 34 H 1.08000 * 123.35011 * 180.26811 * 5 4 3 35 35 H 0.97001 * 120.00122 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.68529 * 58.71583 * 12 10 9 37 37 H 1.09001 * 109.47362 * 298.51361 * 12 10 9 38 38 H 1.09003 * 109.58359 * 294.71442 * 13 12 10 39 39 H 1.09000 * 109.58524 * 174.44035 * 13 12 10 40 40 H 0.96996 * 120.00153 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.47334 * 59.99758 * 25 23 14 42 42 H 1.09006 * 109.46515 * 179.97438 * 25 23 14 43 43 H 1.08992 * 109.47190 * 299.99538 * 25 23 14 44 44 H 1.09006 * 109.49880 * 61.41796 * 26 10 9 45 45 H 1.09003 * 109.50056 * 301.32356 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2853 2.1358 1.1026 5 6 2.7429 3.4124 0.8775 6 6 2.8473 3.7231 -0.4491 7 6 3.3026 5.0079 -0.9883 8 8 3.6209 5.9067 -0.2320 9 7 3.3686 5.1938 -2.3215 10 6 3.8241 6.4776 -2.8604 11 1 4.5964 6.8904 -2.2113 12 6 2.6407 7.4506 -2.9278 13 6 3.1301 8.8009 -3.4609 14 7 3.8113 8.5868 -4.7449 15 6 3.4362 9.2887 -5.8593 16 1 3.5824 8.8622 -6.8406 17 6 2.8680 10.5483 -5.7275 18 7 2.9952 11.2129 -4.5986 19 14 1.9229 11.3003 -7.1526 20 1 1.9257 10.3583 -8.3005 21 1 0.5234 11.5660 -6.7330 22 1 2.5687 12.5748 -7.5572 23 6 4.9031 7.6057 -4.8105 24 1 5.2206 7.4811 -5.8457 25 6 6.0814 8.0924 -3.9645 26 6 4.3966 6.2673 -4.2639 27 16 2.3553 2.3323 -1.4057 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.1438 1.7376 2.0964 34 1 2.9921 4.1022 1.6703 35 1 3.1152 4.4774 -2.9243 36 1 2.2180 7.5842 -1.9320 37 1 1.8786 7.0501 -3.5964 38 1 3.8249 9.2450 -2.7481 39 1 2.2793 9.4669 -3.6051 40 1 2.5984 12.0932 -4.5066 41 1 5.7614 8.2097 -2.9292 42 1 6.8900 7.3630 -4.0141 43 1 6.4321 9.0507 -4.3472 44 1 3.6180 5.8777 -4.9198 45 1 5.2225 5.5574 -4.2174 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947516287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:17 Heat of formation + Delta-G solvation = 1.235672 kcal Electronic energy + Delta-G solvation = -24910.202772 eV Core-core repulsion = 21440.207543 eV Total energy + Delta-G solvation = -3469.995229 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.82185 -38.35212 -37.49336 -34.48661 -34.04110 -32.53023 -30.89694 -29.82809 -28.67956 -26.92010 -25.50844 -24.22899 -22.73740 -22.28327 -21.85106 -20.78921 -19.53536 -18.40085 -17.80199 -16.86218 -16.21705 -15.80555 -15.26077 -14.84787 -14.69447 -14.47254 -14.13404 -13.82951 -13.71913 -13.54634 -13.24887 -12.97631 -12.66669 -12.60659 -12.41972 -12.24437 -12.10258 -11.87494 -11.49389 -11.40507 -11.08107 -11.05152 -10.91784 -10.79324 -10.60819 -10.34024 -10.16766 -10.06145 -9.82868 -9.71225 -9.35766 -8.93474 -8.80103 -8.66683 -8.39312 -6.67919 -5.77244 -3.19619 0.34983 1.25182 1.67635 2.24332 3.28008 3.32067 3.38474 3.46014 3.47820 4.30753 4.49716 4.61981 4.83954 4.85338 5.02826 5.18789 5.29697 5.32978 5.39488 5.41356 5.42459 5.53815 5.60760 5.77264 5.79309 5.80668 5.97120 6.02687 6.08297 6.17173 6.27007 6.31095 6.42779 6.47727 6.59522 6.66820 6.80816 6.88478 6.96135 7.17231 7.40214 7.64004 7.72335 7.81677 8.32035 8.46792 9.22566 9.86131 10.42781 11.31008 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022494 B = 0.002714 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.489457 B =10312.550538 C =10639.317039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.197 4.197 4 C -0.152 4.152 5 C -0.058 4.058 6 C -0.259 4.259 7 C 0.585 3.415 8 O -0.528 6.528 9 N -0.720 5.720 10 C 0.150 3.850 11 H 0.088 0.912 12 C -0.147 4.147 13 C 0.173 3.827 14 N -0.585 5.585 15 C -0.252 4.252 16 H 0.066 0.934 17 C 0.003 3.997 18 N -0.900 5.900 19 Si 0.901 3.099 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.291 1.291 23 C 0.171 3.829 24 H 0.066 0.934 25 C -0.163 4.163 26 C -0.133 4.133 27 S 0.196 5.804 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.142 0.858 34 H 0.153 0.847 35 H 0.391 0.609 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.090 0.910 40 H 0.253 0.747 41 H 0.049 0.951 42 H 0.036 0.964 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 -23.005 8.403 24.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.316 4.316 4 C -0.183 4.183 5 C -0.090 4.090 6 C -0.379 4.379 7 C 0.370 3.630 8 O -0.407 6.407 9 N -0.369 5.369 10 C 0.047 3.953 11 H 0.106 0.894 12 C -0.187 4.187 13 C 0.047 3.953 14 N -0.306 5.306 15 C -0.381 4.381 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.544 5.544 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.218 1.218 23 C 0.062 3.938 24 H 0.084 0.916 25 C -0.222 4.222 26 C -0.173 4.173 27 S 0.464 5.536 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.224 0.776 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.108 0.892 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.005 -22.443 7.379 23.710 hybrid contribution -0.564 0.381 0.737 1.004 sum -2.569 -22.062 8.116 23.648 Atomic orbital electron populations 1.21811 0.94040 1.02147 1.02725 1.20145 0.96397 0.89401 1.03459 1.24240 1.07476 1.02068 0.97833 1.19944 1.04640 0.94198 0.99500 1.20759 0.96794 0.96184 0.95313 1.24753 1.15691 0.99453 0.98030 1.16966 0.77918 0.85391 0.82696 1.90841 1.49157 1.42652 1.58013 1.46239 1.67572 1.17299 1.05791 1.21227 0.97416 0.81733 0.94910 0.89417 1.22637 0.96963 0.98932 1.00217 1.20746 0.97405 0.91167 0.85975 1.44176 1.34353 1.44608 1.07510 1.19200 1.36290 0.96257 0.86399 0.91606 1.25050 1.01886 0.95632 0.97037 1.70046 1.46306 1.12424 1.25601 0.86253 0.79773 0.78896 0.82012 1.20285 1.21619 1.21786 1.20434 0.88284 0.87842 0.97215 0.91574 1.22309 0.98119 1.00756 1.01059 1.22312 0.99961 1.00023 0.95004 1.82964 1.60139 1.02664 1.07798 0.92294 0.91888 0.92143 0.90633 0.89854 0.83997 0.82971 0.77550 0.92806 0.92643 0.96020 0.89235 0.93666 0.93178 0.94476 0.92557 0.91833 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.16 0.37 -0.48 16 2 C -0.05 -0.33 6.36 -27.88 -0.18 -0.51 16 3 C -0.20 -1.71 5.53 -35.86 -0.20 -1.90 16 4 C -0.15 -1.41 10.00 -41.41 -0.41 -1.83 16 5 C -0.06 -0.67 10.01 -40.43 -0.40 -1.08 16 6 C -0.26 -3.36 6.45 -36.79 -0.24 -3.59 16 7 C 0.59 9.49 7.75 -12.90 -0.10 9.39 16 8 O -0.53 -10.54 16.50 5.19 0.09 -10.45 16 9 N -0.72 -10.87 5.07 -54.95 -0.28 -11.15 16 10 C 0.15 2.67 2.21 -67.73 -0.15 2.52 16 11 H 0.09 1.74 5.93 -51.93 -0.31 1.43 16 12 C -0.15 -2.98 5.68 -26.45 -0.15 -3.13 16 13 C 0.17 4.20 4.89 -3.71 -0.02 4.18 16 14 N -0.58 -14.28 2.70 -164.78 -0.45 -14.72 16 15 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 16 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 17 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 18 N -0.90 -26.11 11.19 55.49 0.62 -25.49 16 19 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 C 0.17 3.44 3.29 -67.60 -0.22 3.22 16 24 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 25 C -0.16 -3.15 9.03 37.16 0.34 -2.81 16 26 C -0.13 -2.24 5.02 -26.62 -0.13 -2.37 16 27 S 0.20 1.89 22.10 -107.50 -2.38 -0.48 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.39 4.88 7.72 -40.82 -0.31 4.57 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.56 7.50 -51.93 -0.39 0.17 16 39 H 0.09 2.43 6.03 -51.93 -0.31 2.12 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.05 1.01 5.72 -51.93 -0.30 0.71 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -31.20 371.79 -10.63 -41.83 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -7.08 Total: 3.64 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.73 Total: -5.35 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.10 Total: -51.36 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.38 Total: -0.48 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.20 -10.63 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947516287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.066 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds