Wall clock time and date at job start Tue Mar 31 2020 13:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47187 * 2 1 4 4 C 1.33819 * 124.52179 * 90.00448 * 3 2 1 5 5 C 1.37476 * 115.09963 * 179.72671 * 4 3 2 6 6 C 1.36652 * 113.29522 * 0.45287 * 5 4 3 7 7 C 1.46582 * 125.45570 * 179.83839 * 6 5 4 8 8 O 1.21704 * 119.99718 * 359.71484 * 7 6 5 9 9 N 1.34770 * 120.00133 * 179.71778 * 7 6 5 10 10 C 1.46495 * 120.00354 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.45979 * 35.02015 * 10 9 7 12 12 C 1.53352 * 109.40376 * 275.11910 * 10 9 7 13 13 C 1.53200 * 109.14750 * 178.68069 * 12 10 9 14 14 N 1.46921 * 108.89149 * 54.57573 * 13 12 10 15 15 C 1.36940 * 120.62784 * 126.34534 * 14 13 12 16 16 H 1.07994 * 119.99966 * 207.71018 * 15 14 13 17 17 C 1.38815 * 120.00175 * 27.70890 * 15 14 13 18 18 N 1.31620 * 120.00010 * 17.38573 * 17 15 14 19 19 Si 1.86798 * 120.00070 * 197.38507 * 17 15 14 20 20 H 1.48503 * 109.47325 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47084 * 120.00070 * 19 17 15 22 22 H 1.48498 * 109.47107 * 240.00011 * 19 17 15 23 23 C 1.46923 * 118.74265 * 306.31945 * 14 13 12 24 24 H 1.08998 * 109.58641 * 173.40039 * 23 14 13 25 25 C 1.53004 * 109.58413 * 293.82383 * 23 14 13 26 26 C 1.53032 * 109.46587 * 154.99705 * 10 9 7 27 27 S 1.70615 * 124.52523 * 269.97659 * 3 2 1 28 28 H 1.09004 * 109.47019 * 59.99818 * 1 2 3 29 29 H 1.09000 * 109.47239 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46745 * 299.99796 * 1 2 3 31 31 H 1.09001 * 109.46745 * 240.00204 * 2 1 3 32 32 H 1.08996 * 109.47337 * 120.00248 * 2 1 3 33 33 H 1.07995 * 122.44643 * 359.95144 * 4 3 2 34 34 H 1.08000 * 123.35011 * 180.26811 * 5 4 3 35 35 H 0.97001 * 120.00122 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.68529 * 58.71583 * 12 10 9 37 37 H 1.09001 * 109.47362 * 298.51361 * 12 10 9 38 38 H 1.09003 * 109.58359 * 294.71442 * 13 12 10 39 39 H 1.09000 * 109.58524 * 174.44035 * 13 12 10 40 40 H 0.96996 * 120.00153 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.47334 * 59.99758 * 25 23 14 42 42 H 1.09006 * 109.46515 * 179.97438 * 25 23 14 43 43 H 1.08992 * 109.47190 * 299.99538 * 25 23 14 44 44 H 1.09006 * 109.49880 * 61.41796 * 26 10 9 45 45 H 1.09003 * 109.50056 * 301.32356 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2853 2.1358 1.1026 5 6 2.7429 3.4124 0.8775 6 6 2.8473 3.7231 -0.4491 7 6 3.3026 5.0079 -0.9883 8 8 3.6209 5.9067 -0.2320 9 7 3.3686 5.1938 -2.3215 10 6 3.8241 6.4776 -2.8604 11 1 4.5964 6.8904 -2.2113 12 6 2.6407 7.4506 -2.9278 13 6 3.1301 8.8009 -3.4609 14 7 3.8113 8.5868 -4.7449 15 6 3.4362 9.2887 -5.8593 16 1 3.5824 8.8622 -6.8406 17 6 2.8680 10.5483 -5.7275 18 7 2.9952 11.2129 -4.5986 19 14 1.9229 11.3003 -7.1526 20 1 1.9257 10.3583 -8.3005 21 1 0.5234 11.5660 -6.7330 22 1 2.5687 12.5748 -7.5572 23 6 4.9031 7.6057 -4.8105 24 1 5.2206 7.4811 -5.8457 25 6 6.0814 8.0924 -3.9645 26 6 4.3966 6.2673 -4.2639 27 16 2.3553 2.3323 -1.4057 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.1438 1.7376 2.0964 34 1 2.9921 4.1022 1.6703 35 1 3.1152 4.4774 -2.9243 36 1 2.2180 7.5842 -1.9320 37 1 1.8786 7.0501 -3.5964 38 1 3.8249 9.2450 -2.7481 39 1 2.2793 9.4669 -3.6051 40 1 2.5984 12.0932 -4.5066 41 1 5.7614 8.2097 -2.9292 42 1 6.8900 7.3630 -4.0141 43 1 6.4321 9.0507 -4.3472 44 1 3.6180 5.8777 -4.9198 45 1 5.2225 5.5574 -4.2174 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947516287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:16 Heat of formation + Delta-G solvation = -16.842984 kcal Electronic energy + Delta-G solvation = -24910.986721 eV Core-core repulsion = 21440.207543 eV Total energy + Delta-G solvation = -3470.779178 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.14051 -39.55476 -38.71316 -36.06722 -34.68919 -34.31639 -32.55578 -31.52741 -29.70633 -28.48494 -26.51132 -25.91189 -23.90146 -23.54956 -23.17531 -22.11679 -20.72062 -19.82773 -18.99441 -18.52102 -17.49754 -16.89619 -16.71135 -16.16607 -16.08092 -15.53617 -15.48803 -15.18215 -14.96152 -14.76945 -14.44261 -14.30600 -14.15592 -13.90284 -13.78361 -13.30001 -13.16919 -12.93213 -12.82872 -12.67017 -12.58425 -12.42487 -12.29241 -12.07628 -12.05676 -11.99030 -11.79442 -11.68692 -11.52264 -11.27243 -10.98610 -10.57070 -10.15716 -9.64346 -9.53273 -8.69371 -7.85521 -5.30418 -0.52305 0.44729 0.88851 1.38130 1.46771 1.48877 1.59143 2.06134 2.16197 2.52135 3.30217 3.59970 3.69116 3.74413 3.90413 4.05184 4.15214 4.25871 4.34146 4.41655 4.42391 4.49052 4.50030 4.69517 4.72120 4.80439 4.83314 4.85693 4.92605 5.04365 5.06095 5.08974 5.14714 5.16205 5.21116 5.31918 5.35948 5.42467 5.43383 5.43977 5.54747 5.68918 5.74736 6.40965 6.44081 7.10493 7.15698 7.87529 8.40054 9.21407 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022494 B = 0.002714 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.489457 B =10312.550538 C =10639.317039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.182 4.182 4 C -0.162 4.162 5 C -0.056 4.056 6 C -0.302 4.302 7 C 0.584 3.416 8 O -0.578 6.578 9 N -0.708 5.708 10 C 0.161 3.839 11 H 0.067 0.933 12 C -0.133 4.133 13 C 0.185 3.815 14 N -0.599 5.599 15 C -0.255 4.255 16 H 0.073 0.927 17 C -0.054 4.054 18 N -0.937 5.937 19 Si 0.965 3.035 20 H -0.262 1.262 21 H -0.294 1.294 22 H -0.295 1.295 23 C 0.161 3.839 24 H 0.073 0.927 25 C -0.154 4.154 26 C -0.119 4.119 27 S 0.235 5.765 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.166 0.834 34 H 0.144 0.856 35 H 0.407 0.593 36 H 0.042 0.958 37 H 0.060 0.940 38 H -0.009 1.009 39 H 0.054 0.946 40 H 0.248 0.752 41 H 0.033 0.967 42 H 0.075 0.925 43 H 0.030 0.970 44 H 0.075 0.925 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 -27.061 7.506 28.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.095 4.095 3 C -0.302 4.302 4 C -0.192 4.192 5 C -0.090 4.090 6 C -0.422 4.422 7 C 0.372 3.628 8 O -0.459 6.459 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.085 0.915 12 C -0.173 4.173 13 C 0.059 3.941 14 N -0.321 5.321 15 C -0.385 4.385 16 H 0.091 0.909 17 C -0.249 4.249 18 N -0.583 5.583 19 Si 0.794 3.206 20 H -0.186 1.186 21 H -0.221 1.221 22 H -0.223 1.223 23 C 0.054 3.946 24 H 0.091 0.909 25 C -0.213 4.213 26 C -0.158 4.158 27 S 0.504 5.496 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.183 0.817 34 H 0.162 0.838 35 H 0.244 0.756 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.094 0.906 43 H 0.049 0.951 44 H 0.093 0.907 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.331 -26.566 6.444 27.436 hybrid contribution -0.453 1.516 1.068 1.909 sum -2.784 -25.050 7.512 26.300 Atomic orbital electron populations 1.21821 0.93607 1.03130 1.02193 1.20316 0.96607 0.87606 1.05002 1.24725 1.05192 1.03075 0.97216 1.20097 1.04888 0.93196 1.00991 1.20938 0.96061 0.97147 0.94831 1.24481 1.18870 0.99634 0.99243 1.17414 0.76843 0.86122 0.82442 1.90810 1.51388 1.44693 1.59055 1.45948 1.67330 1.16601 1.05946 1.20867 0.95562 0.82348 0.95525 0.91536 1.22397 0.98074 0.97566 0.99269 1.20403 0.95398 0.92531 0.85806 1.44380 1.35939 1.45125 1.06683 1.19574 1.35352 0.96228 0.87395 0.90888 1.25819 1.03314 0.96404 0.99365 1.70214 1.47764 1.12583 1.27755 0.85232 0.77838 0.77927 0.79598 1.18618 1.22108 1.22256 1.20704 0.87422 0.88338 0.98113 0.90850 1.22197 0.98987 1.00534 0.99625 1.22158 1.01406 0.98539 0.93742 1.82750 1.59073 1.00550 1.07259 0.93004 0.90225 0.92546 0.89357 0.88095 0.81653 0.83846 0.75633 0.93904 0.92079 0.99066 0.92762 0.94326 0.94781 0.90638 0.95120 0.90677 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 71.98 0.71 -0.49 16 2 C -0.06 -0.47 6.36 29.85 0.19 -0.28 16 3 C -0.18 -2.60 5.53 24.68 0.14 -2.46 16 4 C -0.16 -2.63 10.00 21.08 0.21 -2.42 16 5 C -0.06 -1.26 10.01 21.72 0.22 -1.04 16 6 C -0.30 -7.59 6.45 24.08 0.16 -7.43 16 7 C 0.58 18.99 7.75 86.42 0.67 19.66 16 8 O -0.58 -23.95 16.50 -4.36 -0.07 -24.03 16 9 N -0.71 -20.65 5.07 -446.00 -2.26 -22.92 16 10 C 0.16 5.67 2.21 45.12 0.10 5.77 16 11 H 0.07 2.68 5.93 -2.39 -0.01 2.67 16 12 C -0.13 -5.52 5.68 30.78 0.17 -5.34 16 13 C 0.19 9.41 4.89 86.37 0.42 9.83 16 14 N -0.60 -29.68 2.70 -675.23 -1.83 -31.51 16 15 C -0.26 -13.84 9.58 84.03 0.81 -13.04 16 16 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 17 C -0.05 -3.03 4.91 84.86 0.42 -2.62 16 18 N -0.94 -56.73 11.19 21.65 0.24 -56.49 16 19 Si 0.97 45.16 29.59 68.60 2.03 47.19 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 23 C 0.16 6.34 3.29 44.98 0.15 6.49 16 24 H 0.07 2.79 7.93 -2.39 -0.02 2.77 16 25 C -0.15 -5.91 9.03 71.98 0.65 -5.26 16 26 C -0.12 -3.72 5.02 30.67 0.15 -3.57 16 27 S 0.24 3.92 22.10 -56.49 -1.25 2.67 16 28 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.08 0.40 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 35 H 0.41 9.22 7.72 -92.71 -0.72 8.50 16 36 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 38 H -0.01 -0.49 7.50 -2.39 -0.02 -0.51 16 39 H 0.05 3.12 6.03 -2.39 -0.01 3.11 16 40 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 41 H 0.03 1.39 5.72 -2.39 -0.01 1.38 16 42 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 43 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 45 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -71.25 371.79 2.30 -68.95 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.27 Total: 18.32 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 5.16 Total: -2.20 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -3.85 Total: -110.91 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.07 Total: -24.03 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.25 Total: 2.67 kcal Total: -71.25 2.30 -68.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947516287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.111 kcal (2) G-P(sol) polarization free energy of solvation -71.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds