Wall clock time and date at job start Tue Mar 31 2020 13:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.46665 * 2 1 4 4 C 1.37469 * 123.35270 * 265.17752 * 3 2 1 5 5 C 1.33822 * 115.10177 * 180.32840 * 4 3 2 6 6 S 1.70613 * 110.95511 * 359.73217 * 5 4 3 7 7 C 1.36651 * 123.35174 * 85.00521 * 3 2 1 8 8 C 1.46580 * 125.45762 * 359.95835 * 7 3 2 9 9 O 1.21698 * 120.00333 * 359.72273 * 8 7 3 10 10 N 1.34783 * 120.00089 * 179.44613 * 8 7 3 11 11 C 1.46494 * 120.00174 * 180.27731 * 10 8 7 12 12 H 1.09006 * 109.46202 * 325.02592 * 11 10 8 13 13 C 1.53040 * 109.46253 * 84.99913 * 11 10 8 14 14 C 1.53192 * 109.31672 * 181.38403 * 13 11 10 15 15 N 1.46918 * 108.77557 * 305.37067 * 14 13 11 16 16 C 1.36941 * 120.63094 * 233.62773 * 15 14 13 17 17 H 1.08001 * 120.00088 * 151.55105 * 16 15 14 18 18 C 1.38813 * 119.99780 * 331.54982 * 16 15 14 19 19 N 1.31617 * 120.00120 * 160.53182 * 18 16 15 20 20 Si 1.86802 * 120.00083 * 340.53651 * 18 16 15 21 21 H 1.48502 * 109.47093 * 94.84201 * 20 18 16 22 22 H 1.48502 * 109.47205 * 214.84163 * 20 18 16 23 23 H 1.48500 * 109.46824 * 334.84304 * 20 18 16 24 24 C 1.46934 * 118.74258 * 53.60325 * 15 14 13 25 25 H 1.08998 * 109.58325 * 66.18064 * 24 15 14 26 26 C 1.52997 * 109.58563 * 186.46183 * 24 15 14 27 27 C 1.53035 * 109.46104 * 205.07087 * 11 10 8 28 28 H 1.08995 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47023 * 299.99854 * 1 2 3 30 30 H 1.08991 * 109.47110 * 59.99745 * 1 2 3 31 31 H 1.08992 * 109.47312 * 240.00383 * 2 1 3 32 32 H 1.08994 * 109.47110 * 119.99487 * 2 1 3 33 33 H 1.07998 * 122.45034 * 0.06690 * 4 3 2 34 34 H 1.07994 * 124.52340 * 179.73030 * 5 4 3 35 35 H 0.97000 * 119.99763 * 0.27611 * 10 8 7 36 36 H 1.09004 * 109.49803 * 301.33880 * 13 11 10 37 37 H 1.09001 * 109.49339 * 61.43592 * 13 11 10 38 38 H 1.09006 * 109.58395 * 65.15165 * 14 13 11 39 39 H 1.09000 * 109.58863 * 185.57582 * 14 13 11 40 40 H 0.96998 * 120.00157 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.46998 * 60.00310 * 26 24 15 42 42 H 1.09000 * 109.46932 * 180.02562 * 26 24 15 43 43 H 1.08994 * 109.47571 * 299.99883 * 26 24 15 44 44 H 1.08996 * 109.49678 * 298.56464 * 27 11 10 45 45 H 1.09001 * 109.50222 * 58.66400 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3752 2.1013 -1.1442 5 6 2.8078 3.3530 -0.9523 6 16 2.8006 3.7536 0.7062 7 6 2.1889 2.1623 1.1371 8 6 1.8994 1.7027 2.4985 9 8 1.4777 0.5762 2.6838 10 7 2.1053 2.5258 3.5458 11 6 1.8217 2.0644 4.9070 12 1 0.9561 1.4019 4.8929 13 6 3.0347 1.3068 5.4517 14 6 2.7219 0.7961 6.8618 15 7 2.2964 1.9310 7.6921 16 6 2.9136 2.1919 8.8863 17 1 2.9538 3.2030 9.2639 18 6 3.4877 1.1568 9.6116 19 7 4.3915 1.4200 10.5314 20 14 2.9775 -0.6097 9.2820 21 1 3.9252 -1.2273 8.3199 22 1 2.9943 -1.3754 10.5543 23 1 1.6073 -0.6305 8.7097 24 6 1.1963 2.7811 7.2167 25 1 0.2712 2.2049 7.1976 26 6 1.0341 3.9809 8.1522 27 6 1.5263 3.2695 5.8027 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5137 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.3047 1.6567 -2.1259 34 1 3.1199 4.0205 -1.7418 35 1 2.4414 3.4236 3.3982 36 1 3.2588 0.4621 4.8003 37 1 3.8944 1.9758 5.4896 38 1 1.9211 0.0581 6.8138 39 1 3.6144 0.3425 7.2925 40 1 4.7923 0.6967 11.0385 41 1 1.9584 4.5584 8.1659 42 1 0.2174 4.6099 7.7980 43 1 0.8106 3.6288 9.1592 44 1 2.4002 3.9200 5.8372 45 1 0.6767 3.8218 5.4011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948064518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:58 Heat of formation + Delta-G solvation = 10.006672 kcal Electronic energy + Delta-G solvation = -25485.348862 eV Core-core repulsion = 22015.733972 eV Total energy + Delta-G solvation = -3469.614890 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.09634 -38.60935 -37.54793 -34.74050 -32.88751 -32.41498 -31.80231 -30.53286 -29.09605 -26.60978 -25.63323 -24.48515 -22.71861 -22.55899 -21.85813 -20.39487 -19.73749 -18.71764 -18.26159 -16.49062 -16.16750 -15.88657 -15.41922 -15.01344 -14.86838 -14.52044 -14.22748 -13.88674 -13.75632 -13.61863 -13.39365 -13.32800 -12.98071 -12.61887 -12.44097 -12.08270 -11.95011 -11.83379 -11.66022 -11.36041 -11.20201 -11.17022 -11.01977 -10.88093 -10.59873 -10.38134 -10.19376 -9.99094 -9.93910 -9.65028 -9.39566 -9.10781 -8.79098 -8.70198 -8.59212 -6.94389 -5.92023 -3.29292 0.31194 1.25266 1.64095 2.17551 3.15705 3.21561 3.36879 3.52366 3.55795 4.56352 4.56831 4.70649 4.88395 4.93551 4.98620 5.15499 5.21483 5.30170 5.34152 5.40278 5.50434 5.60587 5.62201 5.75764 5.79284 5.91374 5.98125 6.01542 6.07274 6.09461 6.20725 6.23411 6.25643 6.34817 6.37475 6.42517 6.50286 6.63984 6.70020 6.80617 6.95966 7.05339 7.53830 7.99145 8.22347 8.37023 8.96089 9.75337 10.12478 11.23506 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.003314 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.430038 B = 8446.733037 C = 9041.592876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.072 4.072 3 C -0.022 4.022 4 C -0.146 4.146 5 C -0.231 4.231 6 S 0.193 5.807 7 C -0.265 4.265 8 C 0.587 3.413 9 O -0.523 6.523 10 N -0.720 5.720 11 C 0.153 3.847 12 H 0.085 0.915 13 C -0.141 4.141 14 C 0.130 3.870 15 N -0.603 5.603 16 C -0.259 4.259 17 H 0.092 0.908 18 C 0.024 3.976 19 N -0.910 5.910 20 Si 0.879 3.121 21 H -0.289 1.289 22 H -0.304 1.304 23 H -0.269 1.269 24 C 0.176 3.824 25 H 0.032 0.968 26 C -0.136 4.136 27 C -0.137 4.137 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.143 0.857 34 H 0.168 0.832 35 H 0.393 0.607 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.028 0.972 39 H 0.074 0.926 40 H 0.262 0.738 41 H 0.058 0.942 42 H 0.040 0.960 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 4.992 -23.808 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 C -0.037 4.037 4 C -0.177 4.177 5 C -0.369 4.369 6 S 0.461 5.539 7 C -0.385 4.385 8 C 0.373 3.627 9 O -0.401 6.401 10 N -0.370 5.370 11 C 0.049 3.951 12 H 0.103 0.897 13 C -0.182 4.182 14 C 0.004 3.996 15 N -0.327 5.327 16 C -0.387 4.387 17 H 0.110 0.890 18 C -0.175 4.175 19 N -0.553 5.553 20 Si 0.710 3.290 21 H -0.217 1.217 22 H -0.232 1.232 23 H -0.194 1.194 24 C 0.069 3.931 25 H 0.050 0.950 26 C -0.193 4.193 27 C -0.176 4.176 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.161 0.839 34 H 0.185 0.815 35 H 0.227 0.773 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.124 5.486 -22.669 23.880 hybrid contribution -0.188 -1.761 -1.291 2.191 sum -5.312 3.725 -23.960 24.823 Atomic orbital electron populations 1.21597 0.94283 1.01801 1.01694 1.20418 0.96542 0.90542 1.03635 1.19539 0.96215 0.97489 0.90425 1.19924 1.03888 0.94234 0.99681 1.25230 1.08344 1.01471 1.01827 1.83035 1.60026 1.12010 0.98805 1.24562 1.16569 0.99547 0.97847 1.16926 0.77945 0.85176 0.82653 1.90797 1.45622 1.18682 1.85027 1.46177 1.67211 1.16657 1.06967 1.21024 0.98784 0.96641 0.78605 0.89670 1.22408 0.97606 0.99860 0.98281 1.21304 0.98548 0.90418 0.89306 1.44496 1.36589 1.31311 1.20325 1.18935 1.29674 0.94785 0.95303 0.89026 1.25293 0.98142 0.97656 0.96362 1.69816 1.27039 1.32153 1.26332 0.86996 0.79677 0.86505 0.75853 1.21721 1.23238 1.19355 1.20362 0.90400 0.91929 0.90401 0.95033 1.21802 1.00402 0.96832 1.00311 1.22395 1.01421 0.96621 0.97210 0.92331 0.92133 0.93367 0.91425 0.88585 0.83906 0.81482 0.77327 0.92318 0.91606 0.95405 0.90792 0.92833 0.92326 0.94054 0.91527 0.91281 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.77 37.16 0.36 -1.07 16 2 C -0.07 -0.79 5.50 -27.88 -0.15 -0.95 16 3 C -0.02 -0.24 5.16 -105.47 -0.54 -0.79 16 4 C -0.15 -1.30 9.96 -41.41 -0.41 -1.71 16 5 C -0.23 -1.83 10.92 29.18 0.32 -1.51 16 6 S 0.19 1.72 22.16 -107.50 -2.38 -0.66 16 7 C -0.26 -3.22 6.45 -36.79 -0.24 -3.46 16 8 C 0.59 8.65 7.74 -12.89 -0.10 8.55 16 9 O -0.52 -9.15 13.37 5.19 0.07 -9.08 16 10 N -0.72 -9.95 5.07 -55.11 -0.28 -10.23 16 11 C 0.15 2.49 2.42 -67.89 -0.16 2.32 16 12 H 0.09 1.52 7.57 -51.93 -0.39 1.12 16 13 C -0.14 -2.63 5.65 -26.61 -0.15 -2.78 16 14 C 0.13 2.90 4.19 -3.72 -0.02 2.88 16 15 N -0.60 -13.99 2.76 -164.77 -0.45 -14.44 16 16 C -0.26 -7.00 9.06 -15.06 -0.14 -7.14 16 17 H 0.09 2.60 6.37 -52.49 -0.33 2.26 16 18 C 0.02 0.69 5.24 -17.43 -0.09 0.60 16 19 N -0.91 -27.74 13.97 55.49 0.78 -26.97 16 20 Si 0.88 22.61 24.35 -169.99 -4.14 18.47 16 21 H -0.29 -7.30 6.72 56.52 0.38 -6.92 16 22 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 23 H -0.27 -6.81 6.44 56.52 0.36 -6.44 16 24 C 0.18 3.35 3.49 -67.60 -0.24 3.11 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 C -0.14 -2.41 7.95 37.16 0.30 -2.11 16 27 C -0.14 -2.14 4.85 -26.61 -0.13 -2.27 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.76 7.58 -51.93 -0.39 0.37 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 32 H 0.10 1.29 6.33 -51.93 -0.33 0.96 16 33 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.39 4.52 7.72 -40.82 -0.31 4.21 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.03 0.63 6.95 -51.93 -0.36 0.27 16 39 H 0.07 1.80 4.61 -51.93 -0.24 1.56 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.06 1.08 7.44 -51.93 -0.39 0.69 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.29 7.62 -51.93 -0.40 0.90 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 360.18 15.07 5.43 5.43 Total: -1.00 -31.52 360.18 -9.37 -40.89 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.99 Total: 2.91 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -1.39 Total: -6.33 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.04 Total: -51.64 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.07 Total: -9.08 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.14 Total: 18.47 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.38 Total: -0.66 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.52 -9.37 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948064518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.894 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds