Wall clock time and date at job start Tue Mar 31 2020 13:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.46665 * 2 1 4 4 C 1.37469 * 123.35270 * 265.17752 * 3 2 1 5 5 C 1.33822 * 115.10177 * 180.32840 * 4 3 2 6 6 S 1.70613 * 110.95511 * 359.73217 * 5 4 3 7 7 C 1.36651 * 123.35174 * 85.00521 * 3 2 1 8 8 C 1.46580 * 125.45762 * 359.95835 * 7 3 2 9 9 O 1.21698 * 120.00333 * 359.72273 * 8 7 3 10 10 N 1.34783 * 120.00089 * 179.44613 * 8 7 3 11 11 C 1.46494 * 120.00174 * 180.27731 * 10 8 7 12 12 H 1.09006 * 109.46202 * 325.02592 * 11 10 8 13 13 C 1.53040 * 109.46253 * 84.99913 * 11 10 8 14 14 C 1.53192 * 109.31672 * 181.38403 * 13 11 10 15 15 N 1.46918 * 108.77557 * 305.37067 * 14 13 11 16 16 C 1.36941 * 120.63094 * 233.62773 * 15 14 13 17 17 H 1.08001 * 120.00088 * 151.55105 * 16 15 14 18 18 C 1.38813 * 119.99780 * 331.54982 * 16 15 14 19 19 N 1.31617 * 120.00120 * 160.53182 * 18 16 15 20 20 Si 1.86802 * 120.00083 * 340.53651 * 18 16 15 21 21 H 1.48502 * 109.47093 * 94.84201 * 20 18 16 22 22 H 1.48502 * 109.47205 * 214.84163 * 20 18 16 23 23 H 1.48500 * 109.46824 * 334.84304 * 20 18 16 24 24 C 1.46934 * 118.74258 * 53.60325 * 15 14 13 25 25 H 1.08998 * 109.58325 * 66.18064 * 24 15 14 26 26 C 1.52997 * 109.58563 * 186.46183 * 24 15 14 27 27 C 1.53035 * 109.46104 * 205.07087 * 11 10 8 28 28 H 1.08995 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47023 * 299.99854 * 1 2 3 30 30 H 1.08991 * 109.47110 * 59.99745 * 1 2 3 31 31 H 1.08992 * 109.47312 * 240.00383 * 2 1 3 32 32 H 1.08994 * 109.47110 * 119.99487 * 2 1 3 33 33 H 1.07998 * 122.45034 * 0.06690 * 4 3 2 34 34 H 1.07994 * 124.52340 * 179.73030 * 5 4 3 35 35 H 0.97000 * 119.99763 * 0.27611 * 10 8 7 36 36 H 1.09004 * 109.49803 * 301.33880 * 13 11 10 37 37 H 1.09001 * 109.49339 * 61.43592 * 13 11 10 38 38 H 1.09006 * 109.58395 * 65.15165 * 14 13 11 39 39 H 1.09000 * 109.58863 * 185.57582 * 14 13 11 40 40 H 0.96998 * 120.00157 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.46998 * 60.00310 * 26 24 15 42 42 H 1.09000 * 109.46932 * 180.02562 * 26 24 15 43 43 H 1.08994 * 109.47571 * 299.99883 * 26 24 15 44 44 H 1.08996 * 109.49678 * 298.56464 * 27 11 10 45 45 H 1.09001 * 109.50222 * 58.66400 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3752 2.1013 -1.1442 5 6 2.8078 3.3530 -0.9523 6 16 2.8006 3.7536 0.7062 7 6 2.1889 2.1623 1.1371 8 6 1.8994 1.7027 2.4985 9 8 1.4777 0.5762 2.6838 10 7 2.1053 2.5258 3.5458 11 6 1.8217 2.0644 4.9070 12 1 0.9561 1.4019 4.8929 13 6 3.0347 1.3068 5.4517 14 6 2.7219 0.7961 6.8618 15 7 2.2964 1.9310 7.6921 16 6 2.9136 2.1919 8.8863 17 1 2.9538 3.2030 9.2639 18 6 3.4877 1.1568 9.6116 19 7 4.3915 1.4200 10.5314 20 14 2.9775 -0.6097 9.2820 21 1 3.9252 -1.2273 8.3199 22 1 2.9943 -1.3754 10.5543 23 1 1.6073 -0.6305 8.7097 24 6 1.1963 2.7811 7.2167 25 1 0.2712 2.2049 7.1976 26 6 1.0341 3.9809 8.1522 27 6 1.5263 3.2695 5.8027 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5137 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.3047 1.6567 -2.1259 34 1 3.1199 4.0205 -1.7418 35 1 2.4414 3.4236 3.3982 36 1 3.2588 0.4621 4.8003 37 1 3.8944 1.9758 5.4896 38 1 1.9211 0.0581 6.8138 39 1 3.6144 0.3425 7.2925 40 1 4.7923 0.6967 11.0385 41 1 1.9584 4.5584 8.1659 42 1 0.2174 4.6099 7.7980 43 1 0.8106 3.6288 9.1592 44 1 2.4002 3.9200 5.8372 45 1 0.6767 3.8218 5.4011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948064518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:57 Heat of formation + Delta-G solvation = -9.894284 kcal Electronic energy + Delta-G solvation = -25486.211832 eV Core-core repulsion = 22015.733972 eV Total energy + Delta-G solvation = -3470.477860 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.22580 -39.81596 -38.71706 -36.16950 -34.27880 -33.66131 -33.36877 -32.13514 -30.11834 -28.10100 -26.77927 -25.99702 -24.38193 -23.38363 -23.02249 -21.71797 -21.26674 -19.82377 -19.08944 -18.40211 -17.51383 -16.92150 -16.81181 -16.37120 -16.15494 -15.92747 -15.38736 -15.07623 -15.04422 -14.88447 -14.68530 -14.52274 -14.32018 -13.94381 -13.82370 -13.51733 -13.25603 -12.91436 -12.84540 -12.76036 -12.64547 -12.41345 -12.26915 -12.07234 -11.97162 -11.90895 -11.74462 -11.65664 -11.52652 -11.34161 -10.92044 -10.71794 -10.18745 -9.73207 -9.39120 -8.91699 -8.13417 -5.45170 -0.46866 0.52470 0.95159 1.28577 1.39321 1.42047 1.47084 2.06151 2.17084 2.42456 3.05078 3.29450 3.70057 3.83779 3.89861 3.91883 4.16420 4.17599 4.20886 4.32479 4.43196 4.46970 4.52362 4.54840 4.59414 4.69539 4.75995 4.79435 4.88511 4.91464 4.98197 5.03906 5.04578 5.08115 5.10870 5.17829 5.30727 5.38510 5.45881 5.47972 5.53949 5.56542 5.92113 6.20840 6.46639 6.93459 7.14333 7.65624 8.06506 9.05911 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.003314 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.430038 B = 8446.733037 C = 9041.592876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.074 4.074 3 C -0.023 4.023 4 C -0.158 4.158 5 C -0.214 4.214 6 S 0.225 5.775 7 C -0.307 4.307 8 C 0.584 3.416 9 O -0.560 6.560 10 N -0.712 5.712 11 C 0.163 3.837 12 H 0.071 0.929 13 C -0.130 4.130 14 C 0.128 3.872 15 N -0.615 5.615 16 C -0.233 4.233 17 H 0.074 0.926 18 C -0.032 4.032 19 N -0.957 5.957 20 Si 0.931 3.069 21 H -0.286 1.286 22 H -0.312 1.312 23 H -0.264 1.264 24 C 0.165 3.835 25 H 0.036 0.964 26 C -0.129 4.129 27 C -0.122 4.122 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.167 0.833 34 H 0.201 0.799 35 H 0.407 0.593 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.025 0.975 39 H 0.049 0.951 40 H 0.259 0.741 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.041 0.959 44 H 0.072 0.928 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.196 6.612 -27.514 28.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.113 4.113 3 C -0.039 4.039 4 C -0.189 4.189 5 C -0.351 4.351 6 S 0.493 5.507 7 C -0.427 4.427 8 C 0.372 3.628 9 O -0.441 6.441 10 N -0.362 5.362 11 C 0.058 3.942 12 H 0.090 0.910 13 C -0.170 4.170 14 C 0.002 3.998 15 N -0.340 5.340 16 C -0.363 4.363 17 H 0.092 0.908 18 C -0.227 4.227 19 N -0.604 5.604 20 Si 0.762 3.238 21 H -0.213 1.213 22 H -0.241 1.241 23 H -0.189 1.189 24 C 0.059 3.941 25 H 0.054 0.946 26 C -0.186 4.186 27 C -0.162 4.162 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.185 0.815 34 H 0.218 0.782 35 H 0.243 0.757 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.043 0.957 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.019 7.139 -26.427 28.028 hybrid contribution 0.056 -2.163 -0.269 2.181 sum -5.963 4.976 -26.696 27.802 Atomic orbital electron populations 1.21541 0.94062 1.02030 1.01178 1.20400 0.96753 0.90940 1.03202 1.19780 0.95571 0.97431 0.91158 1.20100 1.04297 0.94590 0.99864 1.25701 1.05978 1.01432 1.02031 1.82894 1.58917 1.09398 0.99460 1.24407 1.19562 1.02098 0.96605 1.17321 0.77047 0.84645 0.83753 1.90777 1.47245 1.20247 1.85791 1.45926 1.67276 1.17260 1.05768 1.20711 0.96878 0.96551 0.80036 0.91048 1.22232 0.98771 1.00016 0.95992 1.21240 0.97287 0.90255 0.91032 1.44670 1.37889 1.32059 1.19398 1.18959 1.27604 0.93823 0.95891 0.90810 1.25803 0.99033 1.00737 0.97099 1.69920 1.29155 1.32835 1.28454 0.86139 0.79486 0.83041 0.75168 1.21327 1.24119 1.18851 1.20682 0.89062 0.91751 0.92570 0.94646 1.21730 1.01420 0.96633 0.98842 1.22224 1.03016 0.96279 0.94658 0.91806 0.94757 0.91564 0.89150 0.91632 0.81530 0.78194 0.75740 0.92555 0.91757 0.95714 0.93282 0.93193 0.93413 0.89899 0.93999 0.90910 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.77 71.98 0.70 -1.93 16 2 C -0.07 -1.56 5.50 29.85 0.16 -1.39 16 3 C -0.02 -0.48 5.16 -20.42 -0.11 -0.58 16 4 C -0.16 -2.25 9.96 21.08 0.21 -2.04 16 5 C -0.21 -2.48 10.92 66.82 0.73 -1.75 16 6 S 0.22 3.31 22.16 -56.49 -1.25 2.06 16 7 C -0.31 -6.99 6.45 24.08 0.16 -6.84 16 8 C 0.58 16.84 7.74 86.42 0.67 17.51 16 9 O -0.56 -19.89 13.37 -4.34 -0.06 -19.95 16 10 N -0.71 -18.57 5.07 -446.47 -2.26 -20.83 16 11 C 0.16 5.08 2.42 45.02 0.11 5.19 16 12 H 0.07 2.48 7.57 -2.38 -0.02 2.46 16 13 C -0.13 -4.80 5.65 30.67 0.17 -4.62 16 14 C 0.13 5.69 4.19 86.36 0.36 6.06 16 15 N -0.62 -28.46 2.76 -675.23 -1.86 -30.33 16 16 C -0.23 -12.83 9.06 84.03 0.76 -12.07 16 17 H 0.07 4.29 6.37 -2.91 -0.02 4.27 16 18 C -0.03 -1.90 5.24 84.86 0.45 -1.45 16 19 N -0.96 -60.23 13.97 21.65 0.30 -59.93 16 20 Si 0.93 48.10 24.35 68.60 1.67 49.77 16 21 H -0.29 -14.40 6.72 99.48 0.67 -13.73 16 22 H -0.31 -16.38 7.11 99.48 0.71 -15.67 16 23 H -0.26 -13.21 6.44 99.48 0.64 -12.57 16 24 C 0.16 6.01 3.49 44.97 0.16 6.17 16 25 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 26 C -0.13 -4.36 7.95 71.98 0.57 -3.79 16 27 C -0.12 -3.51 4.85 30.67 0.15 -3.36 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.03 0.86 7.58 -2.38 -0.02 0.84 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.43 8.12 -2.39 -0.02 1.41 16 32 H 0.07 1.80 6.33 -2.39 -0.02 1.79 16 33 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.20 0.98 8.06 -2.91 -0.02 0.95 16 35 H 0.41 8.38 7.72 -92.71 -0.72 7.66 16 36 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.02 1.12 6.95 -2.38 -0.02 1.11 16 39 H 0.05 2.43 4.61 -2.39 -0.01 2.42 16 40 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 41 H 0.05 1.70 7.44 -2.39 -0.02 1.68 16 42 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.04 1.60 7.62 -2.39 -0.02 1.58 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -71.26 360.18 1.97 -69.30 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.18 Total: 14.82 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 5.25 Total: -4.91 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -3.82 Total: -111.09 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.06 Total: -19.95 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 1.67 Total: 49.77 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.25 Total: 2.06 kcal Total: -71.26 1.97 -69.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948064518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.402 kcal (2) G-P(sol) polarization free energy of solvation -71.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds